BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21830.1
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492690 jgi|Araly1|492690|fgenesh2_kg.7__2123__AT4G21840.1 837 0.0
Ahg354595 jgi|Araly1|354595|fgenesh1_pg.C_scaffold_7001768 699 0.0
Ahg945987 jgi|Araly1|945987|scaffold_702216.1 431 4e-120
Ahg490118 jgi|Araly1|490118|fgenesh2_kg.6__3252__AT4G04830.1 219 4e-56
> Ahg492690 jgi|Araly1|492690|fgenesh2_kg.7__2123__AT4G21840.1
Length=647
Score = 837 bits (453), Expect = 0.0
Identities = 541/582 (93%), Gaps = 11/582 (2%)
Strand=Plus/Plus
Query 125 CTCTCAAGCATCATTAGATAAACAAATCCTATTCCCGTCATGGCAGCAATGACCGCGGCA 184
|||||||||||||||| || |||||||||||||| ||||||||||||||||||| | |||
Sbjct 23 CTCTCAAGCATCATTACATCAACAAATCCTATTCTCGTCATGGCAGCAATGACCACAGCA 82
Query 185 GCAGTTCCAGCAACTGGATCTTTCCAGAAACAAGACGAGGAGTGGCGTGCGGTTCTGTCT 244
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 83 GCAGTTCCAGCAACGGGATCTTTCCAGAAACAAGACGAGGAGTGGCGTGCGGTTTTGTCT 142
Query 245 CCTGAGCAGTTTAGGGTTCTCAGACTAAAAGGCACAGATAAACGAGGCAAAGGAGAGTTT 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 143 CCTGAGCAGTTTAGGGTTCTCAGACTAAAAGGCACAGATAAACGAGGCAAAGGAGAGTAT 202
Query 305 ACAAAGAAGTTCGAGGAAGGGACTTATAGTTGTGCTGGTTGTGGAACTGCTCTTTATAAA 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 ACAAAGAAGTTCGAGGAAGGGACTTATAGTTGTGCTGGTTGTGGAACTGCTCTTTATAAA 262
Query 365 TCGACCACTAAGTTCGACTCCGGTTGCGGTTGGCCTGCGTTCTTCGACGCCATCCCCGGT 424
|| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 263 TCAACCACTAAGTTCGACTCCGGTTGCGGCTGGCCGGCTTTCTTCGACGCCATCCCCGGT 322
Query 425 GCTATTAAACAAACTCCAGAAGCAGGTGGAAGAAGAATGGAGATAACATGTGCAGTGTGT 484
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 GCTACTAAACAAACTCCAGAAGCAGGTGGAAGAAGAATGGAGATAACATGTGCAGTGTGT 382
Query 485 GATGGACATTTAGGCCATGTTTTCAAAGGCGAAGGTTACTCTACTCCAACCGATCAACGT 544
||||||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 383 GATGGACATCTAGGCCATGTTTTTAAAGGAGAAGGTTACTCTACTCCAACTGATCAACGT 442
Query 545 CACTGCGTTAACAGTGTCTCTCTCAAATTCTCTTCTGCTGGTTCCTCCCAATAATCATAT 604
|||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||
Sbjct 443 CACTGCGTTAACAGTGTCTCTCTCAAATTCGCTCCTGCTAATTCCTCCCACTAATCAT-- 500
Query 605 CATTGATCGGACCACTTTATCTCATGAAATCAA-GAATCTAT-T-CTATGATCTGTGTGA 661
|||||||||||||| ||||| ||||| |||||| |||| ||| | |||||||| ||| ||
Sbjct 501 CATTGATCGGACCAATTTATTTCATGTAATCAAAGAAT-TATGTTCTATGATCCGTGAGA 559
Query 662 -GCTTGCTAGGTTTC-T-TTCCCATACTCATGTAATATTATG 700
||||||||| || | | |||| ||||||||||||| ||||
Sbjct 560 TGCTTGCTAGATTACATATTCC--TACTCATGTAATACTATG 599
> Ahg354595 jgi|Araly1|354595|fgenesh1_pg.C_scaffold_7001768
Length=426
Score = 699 bits (378), Expect = 0.0
Identities = 411/427 (96%), Gaps = 2/427 (0%)
Strand=Plus/Plus
Query 173 ATGACCGCGGCAGCAGTTCCAGCAACTGGATCTTTCCAGAAACAAGACGAGGAGTGGCGT 232
|||||| |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1 ATGACCACGGCAGCAATTCCAGCAACTAGATCTTTCCAGAAACAAGAAGAGGAGTGGCGT 60
Query 233 GCGGTTCTGTCTCCTGAGCAGTTTAGGGTTCTCAGACTAAAAGGCACAGATAAACGAGGC 292
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 GCGGTTCTTTCTCCTGAGCAGTTTAGGGTTCTCAGATTAAAAGGCACAGATAAACGAGGC 120
Query 293 AAAGGAGAGTTTACAAAGAAGTTCGAGGAAGGGACTTATAGTTGTGCTGGTTGTGGAACT 352
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAAGGAGAGTATACAAAGAAGTTCGAGGAAGGGACTTATAGTTGTGCTGGTTGTGGAACT 180
Query 353 GCTCTTTATAAATCGACCACTAAGTTCGACTCCGGTTGCGGTTGGCCTGCGTTCTTCGAC 412
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTCTTTATAAATCAACCACTAAGTTCGACTCCGGTTGCGGTTGGCCTGCGTTCTTCGAC 240
Query 413 GCCATCCCCGGTGCTATTAAACAAACTCCAGAAGCAGGTGGAAGAAGAATGGAGATAACA 472
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCATCCCCGGTGTTATTAAACAAACTCCAGAAGCAGGTGGAAGAAGAATGGAGATAACA 300
Query 473 TGTGCAGTGTGTGATGGACATTTAGGCCATGTTTTCAAAGGCGAAGGTTACTCTACTCCA 532
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 TGTGCAGTGTGTGATGGACATTTAGGCCATGTTTTCAAAGGAGAAGGTTACTCTACTCCT 360
Query 533 ACCGATCAACGTCACTGCGTTAACAGTGTCTCTCTCAAATTCT-CTTCTGCTGGTTCCTC 591
||||||||||||||||||||||||||||||||||||||||| | ||||| || ||||||
Sbjct 361 ACCGATCAACGTCACTGCGTTAACAGTGTCTCTCTCAAATT-TGCTTCTACTAATTCCTC 419
Query 592 CCAATAA 598
|||||||
Sbjct 420 CCAATAA 426
> Ahg945987 jgi|Araly1|945987|scaffold_702216.1
Length=475
Score = 431 bits (233), Expect = 4e-120
Identities = 374/440 (85%), Gaps = 17/440 (4%)
Strand=Plus/Plus
Query 170 GCAATGACCGCG---GCAGCAGTTCCAGCAACTGGATCTTTCCAGAAACAAGACGAGGAG 226
|||||||||||| |||| || |||| | ||| |||||||||||||||||||||||||
Sbjct 24 GCAATGACCGCGACAGCAGAAGCTCCACCTACTAAATCTTTCCAGAAACAAGACGAGGAG 83
Query 227 TGGCGTGCGGTTCTGTCTCCTGAGCAGTTTAGGGTTCTCAGACTAAAAGGCACAGATAAA 286
||||||||| ||||||||||||||||||||||| ||||||||| |||||| | ||| ||
Sbjct 84 TGGCGTGCGATTCTGTCTCCTGAGCAGTTTAGGATTCTCAGACAAAAAGGAATAGAGCAA 143
Query 287 CGAGGCAAAGGAGAGTTTAC-AAAGAAGTTCGAGGAAGGGACTTA-TAGTTGTGCTGGTT 344
||||||| ||||||| ||| ||| |||||||||||||||||| | ||||| ||||||
Sbjct 144 CGAGGCACTGGAGAGTATACCAAATT-GTTCGAGGAAGGGACTTACT-GTTGTTCTGGTT 201
Query 345 GTGGAACTGCTCTTTATAAATCGACCACTAAGTTCGACTCCGGTTGCGGTTGGCC-TGCG 403
|||| |||||| |||| ||||| ||||| ||||| || ||||||||||| ||||| | |
Sbjct 202 GTGGTACTGCTGTTTACAAATCCACCACAAAGTTTGATTCCGGTTGCGGCTGGCCGT-CA 260
Query 404 TTCTTCGACGCCATCCCCGGTGCTATTAAACAAACTCCAGAAGCAGGTGGAAGAAGA-A- 461
|||||||||||||| |||||||||||||| ||||||||||||| |||| ||||| | |
Sbjct 261 TTCTTCGACGCCATTCCCGGTGCTATTAACCAAACTCCAGAAGAAGGT--AAGAATAGAC 318
Query 462 TGGAGATAACATGTGCAGTGTGTGATGGACAT-TTAGGCCATGTTTTCAAAGGCGAAGGT 520
||||||| ||||||||||| |||||||||||| || || |||||| ||||||| ||||||
Sbjct 319 TGGAGATCACATGTGCAGTATGTGATGGACATCTT-GGACATGTTCTCAAAGGAGAAGGT 377
Query 521 TACTCTACTCCAACCGATCAA-CGTCACTGCGTTAACAGTGTCTCTCTCAAATTCTCTTC 579
| | | | ||| || || | | ||||| ||||||||||||||||||||||||||||||||
Sbjct 378 TTCCCAAATCCTACGGA-CGAGCGTCATTGCGTTAACAGTGTCTCTCTCAAATTCTCTTC 436
Query 580 TGCTGGTTCCTCCCAATAAT 599
| | | ||||||| ||||||
Sbjct 437 TACAGATTCCTCCAAATAAT 456
> Ahg490118 jgi|Araly1|490118|fgenesh2_kg.6__3252__AT4G04830.1
Length=551
Score = 219 bits (118), Expect = 4e-56
Identities = 282/358 (79%), Gaps = 23/358 (6%)
Strand=Plus/Plus
Query 212 AAACAAGACGAGGAGTGGCGTGCGGTTCTGTCTCCTGAGCAGTTTAGGGTTC-TCAGACT 270
|||| ||| |||||||||||||||||||| ||||||||||||||| || ||| || | |
Sbjct 32 AAAC-AGAGGAGGAGTGGCGTGCGGTTCTTTCTCCTGAGCAGTTTCGGATTCTTC-GTCA 89
Query 271 AAAAGGCACAGATAAA-CGAGGCAA-AGGAGAGT-TTACAAAGAAGTTCGAGGAAGGGA- 326
||||||||| || ||| || || || ||||| | | || ||| ||||||||||| |
Sbjct 90 AAAAGGCACCGAAAAACCG-GG-AACTGGAGAATATGAC-AAGTTTTTCGAGGAAGGAAT 146
Query 327 CTTATAGTTGTGCT-GGTTGTGGA-ACTGCTCTTTATAAATCGA-CCACTAAGTTCGACT 383
||| | ||| | | || || | ||| ||||||||||||| | || |||||||| |
Sbjct 147 CTTCT-CTTGCG-TCGGATG-CAAGACTCCTCTTTATAAATC-AGTAACAAAGTTCGATT 202
Query 384 CCGGTTGCGGTTGGCCTGCGTTCTTCG-ACGCCATCCCCGGTGCTATTAAACAAACTCCA 442
|||| || || ||||| || ||||| | | | | | |||||||| ||||| | ||| ||
Sbjct 203 CCGGATGTGGCTGGCCAGCTTTCTTTGAAGGAC-TTCCCGGTGCCATTAACCGAACCCCT 261
Query 443 GAAGCAGGTGGAAGAAGAA-TGGAGATAACATGTGCAGTGTGTGATGGACATTTAGGCCA 501
|| ||| ||| ||||||| | ||||| || ||||||| ||| |||||||||||||||||
Sbjct 262 GATCCAGATGGGAGAAGAACT-GAGATCACTTGTGCAGCGTGCGATGGACATTTAGGCCA 320
Query 502 TGTTTTCAAAGGCGAAGGTTACTC-TACTCCAACCGATCAACGTCACTGCGTTAACAG 558
|||||||||||| |||||||| | ||||||||||||| |||| || |||||||||||
Sbjct 321 TGTTTTCAAAGGAGAAGGTTA-TGGTACTCCAACCGATGAACGCCATTGCGTTAACAG 377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30193350264
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5