BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G21850.1

Length=794
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg354592 jgi|Araly1|354592|fgenesh1_pg.C_scaffold_7001765           726    0.0  


> Ahg354592 jgi|Araly1|354592|fgenesh1_pg.C_scaffold_7001765
Length=432

 Score =  726 bits (393),  Expect = 0.0
 Identities = 419/432 (97%), Gaps = 0/432 (0%)
 Strand=Plus/Plus

Query  101  ATGCCAACATCAGCAACAGCGGTGGCTCCATCAACTGGATCTGTCCAGAAAAAAGATCAA  160
            ||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCCAACACCAGCAACATCAGTGGCTCCATCAACTGGATCTGTCCAGAAAAAAGATCAA  60

Query  161  GACTGGCGTGCGATTTTGTCTCCCGAGCAATTTAGAGTTCTCAGGGAAAAGGGCACAGAG  220
            ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| 
Sbjct  61   GACTGGCGTGCGATTTTGTCTCCTGAGCAATTCAGAGTTCTCAGGGAAAAGGGCACAGAA  120

Query  221  AACCGAGGTAAAGGAGAGTATACCAAACTGTTCGACGACGGAATCTATAGTTGTGCTGGT  280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AACCGAGGTAAAGGAGAGTATACCAAACTGTTCGACGACGGAATCTATAGTTGTGCTGGT  180

Query  281  TGTGCAACTCCTCTTTATAAGTCCACCACTAAGTTCGACTCTGGTTGTGGCTGGCCTTCC  340
            |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  181  TGTGCAACTCCTCTTTATAAGTCCACCACTAAGTTCGACTCTGGCTGTGGATGGCCTTCC  240

Query  341  TTCTTCGATGCTATCCCTGGTGCCATTAAACAAACGCCCGAGGCAGGAGGGAGAAGAATG  400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TTCTTCGATGCTATCCCTGGTGCCATTAAACAAACGCCCGAGGCAGGAGGGAGAAGAATG  300

Query  401  GAGATCACGTGCGCGGCATGTGACGGACATTTAGGTCATGTTGTCAAAGGAGAAGGTTTT  460
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  301  GAGATCACGTGCGCAGCATGTGATGGACATTTAGGTCATGTTGTCAAAGGAGAAGGTTTT  360

Query  461  CCCACAGCGACCGATGAGCGCCACTGCGTCAACAGTGTTTCTCTCAAGTTCTCTGAAATT  520
            |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  361  CCCACAGCGACCGATGAGCGTCACTGCGTCAACAGTGTTTCTCTCAAGTTCTCCGAAATT  420

Query  521  TCCTCCCAATAA  532
            || |||||||||
Sbjct  421  TCTTCCCAATAA  432



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29316523173


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5