BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21860.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492686 jgi|Araly1|492686|fgenesh2_kg.7__2119__AT4G21860.1 976 0.0
Ahg327414 jgi|Araly1|327414|fgenesh1_pm.C_scaffold_6002634 292 2e-78
> Ahg492686 jgi|Araly1|492686|fgenesh2_kg.7__2119__AT4G21860.1
Length=806
Score = 976 bits (528), Expect = 0.0
Identities = 700/777 (90%), Gaps = 35/777 (5%)
Strand=Plus/Plus
Query 70 AATGGCGTTCAATATCATAACACCTGGTCGTGTTTATTCAGCCACGTCTCTCACTTTCGT 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 38 AATGGCGTTCAATATCATAACACCTGGTCGTGTTTATTCAGCCACGTCTCTCACTTTCGT 97
Query 130 TTCCACCATTAAAGCTGCTTTCGTTAAACCTCCTTTGGCCTCTCCGTCTCGTCGTAACCT 189
||||||||||||| |||||||||||| | || || |||| | |||| || ||||
Sbjct 98 TTCCACCATTAAATCTGCTTTCGTTAGA---CC-TT---CTCT-C-TCTC-TCACAACCA 147
Query 190 CCTTC-G-TTTCTCATCATCTCCTTTGTCATTTCCGTCGCTCCGTCGAGGTTTCCACGGT 247
|| | | ||| | || ||||| | ||| || || |||||||||||||| ||||||
Sbjct 148 CCACCGGATTT-GCTTCGTCTCC-GTCTCA-TT---TC-CTCCGTCGAGGTTTTCACGGT 200
Query 248 GGTCGTATTGTGGCAATGGGTTCTTCTGCTCCTGAATCGGTCAATAAGCCGGAAGAAGAG 307
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 201 GGACGTATTGTGGCAATGGGTTCTTCTGCTCCTGAATCTGTCAATAAGCCGGAAGAAGAG 260
Query 308 TGGCGTGCGATTCTTTCTCCTGAACAATTTAGGATTCTCAGACAGAAAGGCACTGAATAT 367
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 261 TGGCGTGCGATTCTTTCTCCTGAGCAATTTAGGATTCTCAGACAGAAAGGCACTGAATAT 320
Query 368 CCAGGAACTGGAGAATACAACAAAGTATTCGACGATGGCATCTATTGTTGTGCAGGATGT 427
|||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 321 CCAGGAACAGGAGAATACAACAAACTATTCGACGACGGCATCTATTGTTGTGCAGGATGT 380
Query 428 GGAACTCCTCTCTACAAATCCACCACCAAATTCGACTCTGGTTGTGGCTGGCCAGCTTTC 487
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 381 GGAACTCCTCTCTACAAATCCACCACCAAATTCGACTCCGGGTGTGGCTGGCCAGCTTTC 440
Query 488 TTTGATGGACTCCCCGGAGCTATAACCCGAACCCCTGATCCAGATGGGAGACGAATCGAG 547
||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||
Sbjct 441 TTTGACGGACTCCCCGGAGCTATAAACCGAACCCCCGATCCAGATGGAAGACGAATCGAG 500
Query 548 ATCACATGTGCTGCTTGTGGAGGACATCTTGGTCACGTTTTTAAAGGAGAAGGTTTCCCT 607
||||||||||| |||||||| |||||||| ||||| || |||||||||||||||||||||
Sbjct 501 ATCACATGTGCCGCTTGTGGGGGACATCTCGGTCATGTATTTAAAGGAGAAGGTTTCCCT 560
Query 608 ACTCCTACCGATGAGCGACACTGTGTAAACAGTATCTCTCTCAAGTTCACACCAGAGAAT 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 ACTCCTACCGATGAGCGACACTGTGTAAACAGTATCTCTCTCAAGTTCACACCAGAGAAT 620
Query 668 CCGACCCTGTAATAATATGATCACAGaaaaaaaGACGTGATAATATAGGTGTGTTGTGTG 727
|| |||||||||||||||||||| | | | | ||||| |||||||||||
Sbjct 621 CCAACCCTGTAATAATATGATCA-A------------T-A-A-TATAGTTGTGTTGTGTG 664
Query 728 ATGCTTCTGTCTCTCTCTCGTACTGTGTTTTTGTCTTTTTTCTGTGAGACTAATGTTTAC 787
|||||||| | |||||||| || |||||||||||||||| || |||||||| ||||||
Sbjct 665 ATGCTTCTATGTCTCTCTCATATTGTGTTTTTGTCTTTTGTCGGTGAGACTCGTGTTTAG 724
Query 788 TTTTGATGGTTAATAATAAGGTCGTTGAATAAAGTCTCCAGACTTTTTGTATCGTCA 844
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TTTTGATGGCTAATAATAAGGTCGTTGAATAAAGTCTCCAGACTTTTTGTATCGTCA 781
> Ahg327414 jgi|Araly1|327414|fgenesh1_pm.C_scaffold_6002634
Length=828
Score = 292 bits (158), Expect = 2e-78
Identities = 302/369 (82%), Gaps = 20/369 (5%)
Strand=Plus/Plus
Query 302 GAAGAGTGGCGTGCGATTCTTTCTCCTGAACAATTTAGGATTC-TCAGACAGAAA-GGCA 359
||||||||||||||||||||||| |||||||| |||||||||| || | || ||| ||||
Sbjct 34 GAAGAGTGGCGTGCGATTCTTTCACCTGAACAGTTTAGGATTCTTC-GTCA-AAAGGGCA 91
Query 360 CTGAATATCCAGGAACTGGAGAATACAACAAAGTATTCGAC---GATGGCATCTATTGTT 416
|||||||||||||||| |||||||| | || |||||| || || || || |||
Sbjct 92 CTGAATATCCAGGAACAGGAGAATATGTC-AA--CTTCGACAAAGAAGGAATTTACGGTT 148
Query 417 GTGCAGGATGTGGAA--CTCCTCTCTACAAATCCACCACCAAA-TTCGACTCTGGTTGTG 473
||| ||||||| || ||||||| || |||||||||| |||| ||| || |||||||||
Sbjct 149 GTGGAGGATGT--AATGCTCCTCTTTATAAATCCACCA-CAAAGTTCAACGCTGGTTGTG 205
Query 474 GCTGGCCAGCTTTCTTTGATGGACTCCCCGGAGCTATAACCCGAACCCCTGATCCAGATG 533
||||||||||||||||||| ||| ||||||| || || ||||||| | || |||||||
Sbjct 206 GCTGGCCAGCTTTCTTTGAAGGAATCCCCGGTGCCATTACCCGAATGTCAGACCCAGATG 265
Query 534 GGAGACGAATC-GAGATCA-CATGTGCTGCTTGTGGAGGACATCTTGGTCACGTTTTTAA 591
||||| ||| | ||||||| | ||||| | ||||| |||||||||||||| ||||| ||
Sbjct 266 GGAGAAGAA-CAGAGATCAAC-TGTGCAACATGTGGTGGACATCTTGGTCATGTTTTCAA 323
Query 592 AGGAGAAGGTTTCCCTACTCCTACCGATGAGCGACACTGTGTAAACAGTATCTCTCTCAA 651
||||||||||||| ||||||| |||||||| || || || || ||||| | || || ||
Sbjct 324 AGGAGAAGGTTTCGCTACTCCAACCGATGAACGCCATTGCGTGAACAGCGTTTCACTTAA 383
Query 652 GTTCACACC 660
|||||||||
Sbjct 384 GTTCACACC 392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5