BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21865.1 Length=783 Score E Sequences producing significant alignments: (Bits) Value Ahg492685 jgi|Araly1|492685|fgenesh2_kg.7__2118__AT4G21865.1 723 0.0 > Ahg492685 jgi|Araly1|492685|fgenesh2_kg.7__2118__AT4G21865.1 Length=621 Score = 723 bits (391), Expect = 0.0 Identities = 470/509 (92%), Gaps = 2/509 (0%) Strand=Plus/Plus Query 105 TCGAAATTGGAACCAAAACTATGTACCCGAAAGTGAAAATTGACAATGAAGCTGGTAGAT 164 |||| ||||||||||||| ||||||||||||||||||| |||||| |||||| |||| | Sbjct 66 TCGAGATTGGAACCAAAATTATGTACCCGAAAGTGAAAGCTGACAACGAAGCTTGTAGTT 125 Query 165 ACAAGCAGAAGG-GTTCTTGTCTGAACTCGAACTATCTCCAAACTCGTGTCTCTGAGAAT 223 ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 126 ACAAGTAG-AGGAGTTCTTGTCTGAACTCGAACTATCTCCAAACTCGTGTCTCTGAGAAT 184 Query 224 AATCAAGAAGATGATTTACAAATATACGTGGCTAAGATTCCTAAGATTTACATACCAAGT 283 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 185 AATCAAGAAGATGATTTACAAATATATGTGGCTAAGATTCCTAAGATTTACATACCAAGT 244 Query 284 GTCCTCATGTCTCAGAGTGAATCCAAAGAAATGAATAAGCCTATTAGAGGAGCTGACATT 343 |||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 245 GTCCTCATGTCTGAAAGTGAATCCAAAGAAATGAATAAGCGTATTAGAGGAGCTGACATT 304 Query 344 GAAGTAAAACCAATAACCAAAGCCAGTCCAACCCTACGTCCACGCGCTGTTGTATCAAGT 403 ||||||||| ||| ||||||||||||||| | | |||| ||||||||||||||||||||| Sbjct 305 GAAGTAAAATCAAAAACCAAAGCCAGTCCGATCTTACGCCCACGCGCTGTTGTATCAAGT 364 Query 404 CCCGATAATGATGCGATGATCGGCAACATGAACATGATTGAAGAAAGGAAAGCTAAGAAG 463 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 365 CCCGATAATGATGCAATGATCGGCAACATGAACATGATTGAAGAAAGAAAAGCTAAGAAG 424 Query 464 GGTTTGAAGAGTAAAGATCATATTAAGAGTAGGGCTTCTCAGCTTAAGAATGTTAATACC 523 |||||||||||| | |||||||| | ||| || |||||||||| ||||||| || |||| Sbjct 425 GGTTTGAAGAGTGATGATCATATCAGGAGCAGAGCTTCTCAGCCTAAGAATATTGATACT 484 Query 524 AATGTGAAGATTTCTCATCGTATAGTCGCTAAGCTACCGGGAGTCAATTCAAGGGATCAC 583 |||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||| Sbjct 485 AATGTGAAGATTTCTCATCGTATAGTCGCTAAGCAATCAGGAGTCAATTCAAGGGATCAC 544 Query 584 AAATGATCAGCTTCTCTATTAATGATGCC 612 ||||||||| ||| | |||| |||||||| Sbjct 545 AAATGATCAACTTGTTTATTGATGATGCC 573 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28897171086 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5