BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G21865.1

Length=783
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492685 jgi|Araly1|492685|fgenesh2_kg.7__2118__AT4G21865.1         723    0.0  


> Ahg492685 jgi|Araly1|492685|fgenesh2_kg.7__2118__AT4G21865.1
Length=621

 Score =  723 bits (391),  Expect = 0.0
 Identities = 470/509 (92%), Gaps = 2/509 (0%)
 Strand=Plus/Plus

Query  105  TCGAAATTGGAACCAAAACTATGTACCCGAAAGTGAAAATTGACAATGAAGCTGGTAGAT  164
            |||| ||||||||||||| |||||||||||||||||||  |||||| |||||| |||| |
Sbjct  66   TCGAGATTGGAACCAAAATTATGTACCCGAAAGTGAAAGCTGACAACGAAGCTTGTAGTT  125

Query  165  ACAAGCAGAAGG-GTTCTTGTCTGAACTCGAACTATCTCCAAACTCGTGTCTCTGAGAAT  223
            ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  126  ACAAGTAG-AGGAGTTCTTGTCTGAACTCGAACTATCTCCAAACTCGTGTCTCTGAGAAT  184

Query  224  AATCAAGAAGATGATTTACAAATATACGTGGCTAAGATTCCTAAGATTTACATACCAAGT  283
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  185  AATCAAGAAGATGATTTACAAATATATGTGGCTAAGATTCCTAAGATTTACATACCAAGT  244

Query  284  GTCCTCATGTCTCAGAGTGAATCCAAAGAAATGAATAAGCCTATTAGAGGAGCTGACATT  343
            |||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  245  GTCCTCATGTCTGAAAGTGAATCCAAAGAAATGAATAAGCGTATTAGAGGAGCTGACATT  304

Query  344  GAAGTAAAACCAATAACCAAAGCCAGTCCAACCCTACGTCCACGCGCTGTTGTATCAAGT  403
            ||||||||| ||| ||||||||||||||| | | |||| |||||||||||||||||||||
Sbjct  305  GAAGTAAAATCAAAAACCAAAGCCAGTCCGATCTTACGCCCACGCGCTGTTGTATCAAGT  364

Query  404  CCCGATAATGATGCGATGATCGGCAACATGAACATGATTGAAGAAAGGAAAGCTAAGAAG  463
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  365  CCCGATAATGATGCAATGATCGGCAACATGAACATGATTGAAGAAAGAAAAGCTAAGAAG  424

Query  464  GGTTTGAAGAGTAAAGATCATATTAAGAGTAGGGCTTCTCAGCTTAAGAATGTTAATACC  523
            |||||||||||| | |||||||| | ||| || |||||||||| ||||||| || |||| 
Sbjct  425  GGTTTGAAGAGTGATGATCATATCAGGAGCAGAGCTTCTCAGCCTAAGAATATTGATACT  484

Query  524  AATGTGAAGATTTCTCATCGTATAGTCGCTAAGCTACCGGGAGTCAATTCAAGGGATCAC  583
            |||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct  485  AATGTGAAGATTTCTCATCGTATAGTCGCTAAGCAATCAGGAGTCAATTCAAGGGATCAC  544

Query  584  AAATGATCAGCTTCTCTATTAATGATGCC  612
            ||||||||| ||| | |||| ||||||||
Sbjct  545  AAATGATCAACTTGTTTATTGATGATGCC  573



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28897171086


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5