BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G21870.1

Length=639
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492684 jgi|Araly1|492684|fgenesh2_kg.7__2117__AT4G21870.1         617    2e-176


> Ahg492684 jgi|Araly1|492684|fgenesh2_kg.7__2117__AT4G21870.1
Length=449

 Score =  617 bits (334),  Expect = 2e-176
 Identities = 421/461 (91%), Gaps = 13/461 (3%)
 Strand=Plus/Plus

Query  42   aaaaaaTGGATTTTCAGACAATTCAAGTGATGCCATGGGAATATGTTCTAGCTTCTCAAT  101
            ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  1    AAAAAATGGATTTTCAGACAATTCAAGTGATGCCATGGGAATATGTTTTATCTTCTCAAT  60

Query  102  CTCTTAATA-ACTATCAAGAGAATCATGTTCGTTGGTCTCAGTCTCCAGATTCTCACACT  160
            |||||| |  | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTCTTAGTGGA-TATCAAGAGAATCATGTTCGTTGGTCTCAGTCTCCAGATTCTCACACT  119

Query  161  TTCTCTGTTGATCTTCCTGGGTTAAGGAAAGAAGAAATAAAAGTTGAGATCGAAGATTCG  220
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  120  TTCTCTGTTGATCTTCCTGGGTTTAGGAAAGAAGAAATAAAAGTTGAGATCGAAGATTCG  179

Query  221  ATATACTTAATCATACGAACGGAGGCAACCCCTATGTCGCCTCCGGATCAGCCTTTGAAG  280
            |||||||| |||||| |||||||||| ||||    ||| |    |||||||||  |||||
Sbjct  180  ATATACTTGATCATAAGAACGGAGGCGACCC----GTC-C----GGATCAGCCGGTGAAG  230

Query  281  ACTTTTAAGAGGAAATTTCGGTTGCCGGAATCGATAGATATGATCGGAATATCAGCTGGC  340
            | ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| 
Sbjct  231  AGTTTTAAGAGGAAATTCCGGTTGCCGGAATCGATAGATATGATAGGAATATCAGCTGGT  290

Query  341  TACGAAGATGGTGTGTTGACTGTGATTGTACCCAAGAGGATTATGACAAGGAGGCTCATT  400
            || ||||||||||||||||||||||||||||| |||||||||| |||||||||  |||||
Sbjct  291  TATGAAGATGGTGTGTTGACTGTGATTGTACCAAAGAGGATTACGACAAGGAGATTCATT  350

Query  401  GATCCTTCTGATGTTCCTGAAAGTCTTCAACTTCTTGCTAGAGCTGCTTAATAACGCGTT  460
            || ||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||
Sbjct  351  GAACCTTCTGATGTTCCTGAAACTCTTCAACTACTTGCAAGAGCTGCTTAAAAACGCGTT  410

Query  461  ACATTGTTCTTCCTTGTCCCCCACGAGTTCAATCTTTGTTT  501
            |  |||| ||||||||| |||||||||||| ||||||||||
Sbjct  411  A--TTGTGCTTCCTTGTACCCCACGAGTTCGATCTTTGTTT  449



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23407471038


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5