BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21880.1
Length=2702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492683 jgi|Araly1|492683|fgenesh2_kg.7__2116__AT4G21880.1 1441 0.0
Ahg490115 jgi|Araly1|490115|fgenesh2_kg.6__3249__AT4G04790.1 1081 0.0
Ahg354584 jgi|Araly1|354584|fgenesh1_pg.C_scaffold_7001757 183 4e-45
> Ahg492683 jgi|Araly1|492683|fgenesh2_kg.7__2116__AT4G21880.1
Length=2779
Score = 1441 bits (780), Expect = 0.0
Identities = 856/893 (96%), Gaps = 4/893 (0%)
Strand=Plus/Plus
Query 1605 TTTGAAGGTGCATATAAC-ATGCTTGGTAATTTAAAGAATTTCAATTTGGCACCGAACTC 1663
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1457 TTTGAAGGTGCATAT-ACTATGCTTGGTAATTTGAAGAATTTCAATTTGGCACCGAACTC 1515
Query 1664 TAGCATGTACAATTCTATAATGGCAGGATATTTCCGGGAGAAAAAAGTGAACAGTGCCTT 1723
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1516 TAGCATGTACAATTCTATAATGGCAGGATATTTCCGGGAGAAAAACGTGAACAGTGCTTT 1575
Query 1724 AAAGGTCCTCAAGGAAATGAAAGAAGCTGATGTTAAACCTGATTCGGTGACTTTTAGCTA 1783
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1576 AAAGGTCCTCAAGGAAATGAAAGAAGCTGATGTTAAACCTGATTCCGTGACTTTTAGCTA 1635
Query 1784 TCTAATAAACTATTGTGGCGAGGAGGCGACTATTGCGAAGTATTATAAGGAGATGAAGCA 1843
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1636 TCTAATAAACTATTGCGGCGAGGAGGCGACTATTGCGAAGTATTATAAGGAGATGAAGAA 1695
Query 1844 AGCAGGAGTTGAAGTTAATAAGCACGTTTACATGTCCCTTGTTAAAGCATATGCATCATG 1903
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1696 AGCAGGAGTTGAAGTTAATAAGCACGTTTACATGTCCCTTATTAAAGCATATGCATCATG 1755
Query 1904 CGGACAGTTTGAAAAGGCAAAACAGGTGCTCATGGACCTGGAAGTTCCGGCTAAGGATCA 1963
||||||| ||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1756 TGGACAGTCTGAGAAGGCAAAACAGGTGCTCGTGGACCTGGAAGTTCCGGCGAAGGATCA 1815
Query 1964 CAATGAGCTGAAAAGTGTACTTATATCTGCTCTGGCATCAAATGGAAATATAACAGAGGC 2023
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1816 CAATGAGCTGAAAAGTGTGCTTATATCTGCTCTGGCATCAAATGGAAATATAACAGATGC 1875
Query 2024 TTTAAGTATTTATGAAGAAATGAAGAAACTCCGCTGCCCCGTAGAGCCAAAAGCTATCT- 2082
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1876 TTTAAGTATTTATGAAGAAATGAAGAAACTCGGCTGCCCCGTAGAGCCAAAAGCTAT-TA 1934
Query 2083 TATCTCTTATAGAGAACTCTGATTCAAACGCAGAGCTGGGAACGTTGGTTGAACTCACTC 2142
||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1935 TATCTCTTATAGATAACTCTGATTCAAACGCAGAGTTGAGAACGTTGGTTGAACTCACTC 1994
Query 2143 ATGAGCTGCGTGATTCTAAATTTTGGATAGATGGTTTCTTCAAAATTATCGTGTTTGCTG 2202
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1995 ATGAGCTGCGTGATTATAAATTTTGGATAGATGGTTTCTTCAAAATTATTGTGTTTGCTG 2054
Query 2203 TTCGCAACAATAGATCAAGCTCTATTCTGGATTTGTTAGAGCAGACCAAAAACCACTTGT 2262
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 2055 TTCGCAACAATAGATCAAGCTCTATTCTCGATTTGCTAGAGCAGACCAAAAACCACTTGT 2114
Query 2263 CCAAGGATGACGTCGGTGTGGAATATTGGTTTGAAGAGGTGTTTAAGTCAATAGCGGAAA 2322
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2115 CCAAGGATGACATCGCTGTGGAATATTGGTTTGAAGAGGTGTTTAAGTCAATAGCAGAAA 2174
Query 2323 CAGAGTCTAGTGATGTGAAGGTAGGGCTGGACTTGGTGAGTTTTATGAAAGAAGAGCTTG 2382
||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 2175 CAGAGTCTAATGATGTGAAGCTAGGGCTGGGCTTGGTGAGTTTTATGAAAGAAGAGCTTG 2234
Query 2383 AGTTATGTCCTTCAAGAAAATGTCTGGATTTTCTTCTACATGCTTGTGTCAATGCCAAAG 2442
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2235 AGTTATGTCCTTCAAGAAAATGTCTAGATTTTCTTCTACATGCTTGTGTCAATGCCAAAG 2294
Query 2443 ATAAGCAGAGCGCTCTACTGGTATGGGAAGAGTACCAATGTGCAGAACTTCCT 2495
||||||||| ||||||||||||||| |||||||||||| |||||||||||||
Sbjct 2295 ATAAGCAGAATGCTCTACTGGTATGGAAAGAGTACCAATTTGCAGAACTTCCT 2347
Score = 1240 bits (671), Expect = 0.0
Identities = 839/920 (91%), Gaps = 12/920 (1%)
Strand=Plus/Plus
Query 125 TAGGCCTTGATTCGATTTTGTTAACTGTTGTAAATGTGAAAAAACAATGGCTTTAAAGGC 184
|||| ||||||||||||| |||||| ||||||||||| || ||||||||||||||||||
Sbjct 93 TAGGTCTTGATTCGATTTGGTTAAC-CTTGTAAATGTG-AAGAACAATGGCTTTAAAGGC 150
Query 185 GAAGAAAAGCTTAAGCGCGATATTTCGCTTTGCGATGAGAAACGCTGCCAAAACTGCCGA 244
||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 151 GAAGAAAAGTTTAAGCGCGCTATTTCGCTTTGCGATGAGAAACGCTGCCAAGACTGCTGA 210
Query 245 AGTTGAAGCCAAAGCCGTAGCCGGAGATTCTCTGATTTCAGACACTGGACCAGTGTCAAT 304
|| |||||||||||| ||||||||||||| |||| ||| |||||||||| ||||||| |
Sbjct 211 AGCCGAAGCCAAAGCCATAGCCGGAGATTCACTGACTTCCGACACTGGACTAGTGTCATT 270
Query 305 GTCTTTAATACCGGATTTTCTCTCATCGCTTAAGTCTCCGGAAGATTCTTCCAACATTGG 364
| |||||| ||||| ||||||||||||||||||||| |||| ||||| || | || |||
Sbjct 271 GAGTTTAATGCCGGACTTTCTCTCATCGCTTAAGTCTTCGGACGATTCGTCTATCACTGG 330
Query 365 TCAAGATTTTGGTGAACCGGCACTTGCGGGTCAGGTCTCGTCTGCGTTAGATGTTAAATC 424
|||||| |||| ||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 331 ACAAGATCTTGGAGAACCGGCACTCGCGGGTCAGGTCTCGTCCGCTTTAGATGTTAAATC 390
Query 425 TATTGGAT-ATAATCTTCTTCGAGAAAGAAATGGCGAGAA-AGTTTTTCCGAAGAACGTA 482
|||||| | ||| |||| ||| ||||||||||||||| || |||||| ||||||||| |
Sbjct 391 TATTGG-TAATAGTCTTATTCAAGAAAGAAATGGCGATAATGGTTTTT-CGAAGAACGCA 448
Query 483 TTGGAAACCTTAGATTTACTGTCTAGGAAAGGTTG-TTCGTCGCAAAAGCCAAAGCAGGC 541
|||||||||| |||||| ||| ||||||| ||| |||||||||||||||||| |||||
Sbjct 449 TTGGAAACCTCAGATTTCCTGAATAGGAAA-ATTGTTTCGTCGCAAAAGCCAAAACAGGC 507
Query 542 TTCACGTGGTAGGATGCTGACAGAAAATTACCAGAACAAACAGTCTGAGATTATGGAGAA 601
||||||||| ||| ||| |||||| ||||| ||||| |||||||| ||||||||||||||
Sbjct 508 TTCACGTGGCAGGGTGCAGACAGAGAATTATCAGAAAAAACAGTCAGAGATTATGGAGAA 567
Query 602 GCTTGCCAAGGGATGTGTTCGGAAGTTGGGAACTGAGACTATGTTTGAGGTGTTGACTAA 661
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 568 GCTTGCCAAGGGCTGTGTTCGGAAGTTGGGCACTGAGACTATGTTTGAGGTGTTGACTAA 627
Query 662 AATGGGGAAAGAAGCGGGTGAGAAAGAATACAATGCAATGACTAAACTTTGCATACAACG 721
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 628 AATGGGAAAAGAAGCGGGTGAGAAAGAATACAATGCAATGACTAAACTTTGCATAGAACG 687
Query 722 TGCGAGGAGAAGCAATGATGCAGAATATGCTCTTGATCAAATTGGGAAGGCTATTGAACA 781
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 CGCAAGGAGAAGCAATGATGCAGAATATGCTCTTGATCAAATTGGGAAGGCTATTGAACA 747
Query 782 TCTCAAAGAAATGAGACAGCTTGGATTCTCTATTGGAGAAGGAGCTTATGGCCCtttttt 841
|||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||
Sbjct 748 TCTCAAAGAAATGAGACAACTCGGATTCTCTATAGGAGAAGGAGCTTATGGGCCTTTTTT 807
Query 842 tAAGTACTTAGTTGATATGGAAATGGTAGCGGAGTTCCAAATTCTCAAGGATTTTATTAA 901
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 808 TAAGTACTTAGTTGATATGGAAATGGTAGAGGAATTCCAAATTCTCAAGGATTTTATTAA 867
Query 902 GGAGGCATGTCCTGAGTCTTGTGGGAGACTTGTCTACTATGAAATGCTTCTTTGGATCCA 961
|||||| || ||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 868 GGAGGCTTGCCCTGAGTCTAGTGGGAGACTTGTCTACTATGAAATGCTCCTTTGGATCCA 927
Query 962 AGTCAACGACGAAGAGAAGATCCACAAACTTTGCAATA-AAGTTGATGATAGTGGGCTAA 1020
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 928 AGTCAACGACGAAGAGAAGATCCACAAACTTTGCAATACAA-TTGATGATAGTGGGCTTA 986
Query 1021 GTTTATCAA-TCCTACAAGA 1039
||||||||| | |||||||
Sbjct 987 GTTTATCAAATT-TACAAGA 1005
Score = 675 bits (365), Expect = 0.0
Identities = 377/383 (98%), Gaps = 0/383 (0%)
Strand=Plus/Plus
Query 1222 AAGATGGAGTGGAGACAGTTTCAAATCTCATATTCAGCTATGCAACCTGCATCCCAAATT 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 AAGATGGAGTGGAGACAGTTTCAAATCTCATATTCAGCTATGCAACCTGCATCCCAAATT 1061
Query 1282 CAACGGTAGAGGATGCCATTTTCAAGTTTAACAAGTTGCATGAAGAACTAGATATCGTGC 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1062 CAACGGTAGAGGATGCCATTTTCAAGTTTAACAAGTTGCATGAAGAACTAGATGTCGTGC 1121
Query 1342 CTTCATCTACATCTTATGAGAATCTTGTCAGTTATCTTTGTGGCTCAAATGAGGTGGTCA 1401
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 CTCCATCTACATCTTATGAGAATCTTGTCAGTTATCTTTGTGGCTCAAATGAGGTGGTCA 1181
Query 1402 CTGCTCTTGATATAGTTGAAAATATGTGTGAAGCAGGTCTGGTAATATCAGCAAACATCC 1461
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1182 CTGCTCTTGATATAGTTGAAAATATGTGTGAAGCAGGTCTGGTAATATCGGCAAACATCC 1241
Query 1462 TGCACTCATTGTTACAGGCCATTGAGCAGATTCTTGAGTTTAATTTGGTGCAAAGAATCT 1521
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1242 TGCACTCATTGTTACAGGCCGTTGAGCAGATTCTTGAGTTTAATTTGGTGCAAAGAATCT 1301
Query 1522 ATTCAATAATGAGCAACAAGAGTGTGAAGCCAAATAGTGAGACTTTCAGGAAATCTATAA 1581
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1302 ATTCAATAATGAGCAACAAGAGTGTGAAGCCAAATAGTGAGACTTTCAGGAGATCGATAA 1361
Query 1582 ATTTGTGCATAAGAATCAAAGAT 1604
|||||||||||||||||||||||
Sbjct 1362 ATTTGTGCATAAGAATCAAAGAT 1384
Score = 180 bits (97), Expect = 6e-44
Identities = 105/109 (96%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 2517 AGGATGTATCAGGTTCTAGTAGCTGCAGGAGATTCGAAAAGTGCAGAGGCAATAGTATCA 2576
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 2408 AGGATGTATCAGGTTCTAGTAGCTGCAGGAGATTCTAAAAGTGCAGAGGCATTAGTATCA 2467
Query 2577 AAGATTCCTAATGATGATAAAGATGTCAAATGTATAATTAAAGAAAGCC 2625
|||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2468 AAGATTCCTAATGACGATAAAGATGTCAAATGTATAGTTAAAGAAAGCC 2516
Score = 121 bits (65), Expect = 3e-26
Identities = 74/78 (95%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 3 AGATTAATTACATAAGTGCCACTA-CCACAAAATCTTGCAGGGTTTATCAAACACTTGTT 61
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1 AGATTAATTACATTAGTGCCACTATACACAAAATCTTGCAGGGTTTATCAAACACTTCTT 60
Query 62 CCGAATGATTCAtcttct 79
||||||||||||||||||
Sbjct 61 CCGAATGATTCATCTTCT 78
> Ahg490115 jgi|Araly1|490115|fgenesh2_kg.6__3249__AT4G04790.1
Length=2515
Score = 1081 bits (585), Expect = 0.0
Identities = 1503/1933 (78%), Gaps = 115/1933 (6%)
Strand=Plus/Plus
Query 731 AAGCAATGATGCAGAATATGCTCTTGATCAAATTGGGAAGGCTATTGAACATCTCAAAGA 790
|||||||||| ||| |||||||||| || |||| ||||||| |||| | | | |||
Sbjct 535 AAGCAATGATTTAGATTATGCTCTTGGCCACATTGAGAAGGCTTTTGAGCTTTTGAAATC 594
Query 791 AATGAGACAGCTTGGATTCTCT-ATTGGAGAAGGAGCTTATGGCCCtttttttAAG-TAC 848
|||||| | | ||||||| | |||| |||| ||| |||||| ||| || || | ||
Sbjct 595 TATGAGAGATCGCGGATTCT-TGATTGAAGAAAGAGTTTATGGTCCTATTCTT-GGTTAT 652
Query 849 TTAGTTGATATGGAAATGGTAGCGGAGTTCCAAA-TTCTCAAGGATTTTATTAAGGAGG- 906
||| |||||||||| ||||||| ||||||||||| || | |||||| | |||| |||||
Sbjct 653 TTAATTGATATGGATATGGTAGAGGAGTTCCAAAGTT-TTAAGGATGTGATTAGGGAGGC 711
Query 907 CATGTCCTGAG-TCTTG-TGGGAGACTT-GTCTACTATGAAATGCTTCTTTGGATCCAAG 963
|| ||| || | || | || ||||||| || |||||||||||||||||||||||||||
Sbjct 712 CA-GTCTTG-GTTC-GGTTGAGAGACTTGGT-TACTATGAAATGCTTCTTTGGATCCAAC 767
Query 964 TCAACGACGAAGAGAAGATCCACAAACTTTGCAATA-AAGTTGA---TGATAGT-GGGCT 1018
| || | ||||||||| | | ||||| ||| || |||| ||||| | |||
Sbjct 768 TTGGTGATGGAGAGAAGATTGAGGAGCTTTGTGATACAA-TTGATGGTGATAATAGGG-A 825
Query 1019 AAGTTTATCAATCCTACAAGAATATTATTTGGTTGCACTGTGCGAGAAA-GA-CAGTAA- 1075
||| ||||||||| |||||||| ||||| || ||||||| || | ||| || || ||
Sbjct 826 AAGCTTATCAATCTTACAAGAAAATTATCTGCTTGCACTATG-TAAAAAGGACCA--AAC 882
Query 1076 GGAAAATTTTCAGAAGCTGTTAGAAATTGTCGACATAACAACAGTATC-TTCACCAGACG 1134
| | || || ||| ||| |||| ||||| |||||||||| ||| || || | |||
Sbjct 883 GTACCATCTTGAGAGGCTCTTAGGGATTGTAGACATAACAAAAGT-TCAATCGTCGGAC- 940
Query 1135 C-ATTGA-AGAGCATATTTGGA-TACCTT-GGAAAATCGCTGTTGGAGTCTGTTGCAATG 1190
| || || | | ||||||| || |||||| ||| | | ||||| |||||||| |
Sbjct 941 CTATGGACA-AACATATTT-GAGTACCTTGGGAGGTTTTC-ATTGGATTCTGTTGCGGGG 997
Query 1191 AAGCTACTTTGGGAACTAAGAGACTGTCGTAAAGATGGAGTGGA-G-ACAGTTTC-AAAT 1247
||| | |||||||| |||||||| || | | || ||||| || | || ||||| ||
Sbjct 998 AAGTTCCTTTGGGAGCTAAGAGAAAGT-G-ATGGA-GGAGT-GACGAAC-GTTTCTGAA- 1051
Query 1248 CTCATATTC-AGCTATGCAACCTGCATCCCAAATTCAACGGTAGAGGATGCCATTTTCAA 1306
||||| || | |||| | || |||| ||||||| | ||||| |||||| |||| || ||
Sbjct 1052 CTCAT-CTCTATCTATTCTACTTGCACCCCAAATCCGACGGTTGAGGATACCATCTTGAA 1110
Query 1307 GTTTAACAAGTTGCATGAAGAACTAGATATCGTGCCTTCATCTACATCTTATGAGAATCT 1366
||||||||| ||||||||||||| ||| | |||||||||||||||| || || || ||
Sbjct 1111 ATTTAACAAGATGCATGAAGAACTTGATGTTATGCCTTCATCTACATCGTACGAAAAGCT 1170
Query 1367 TG-TCAGTTATCTTTGTGGCTCAAATGAGGTGGTCACTGCTCTTGATATAGTTGAAAATA 1425
|| | || ||| |||| ||| |||||||| |||||||||||||||||||||||||| |
Sbjct 1171 TGTTAAG-TATAGCTGTGACTCGAATGAGGTAGTCACTGCTCTTGATATAGTTGAAAAAA 1229
Query 1426 TGTGTGAAGCAGGTCTGGTAATATCAGCAAACATCCTGCACTCATTGTTACAGGCCATTG 1485
|| |||||||||||||| ||||||| ||| | ||||| || ||||||||||| |||||||
Sbjct 1230 TGGGTGAAGCAGGTCTGATAATATCCGCAGATATCCTACATTCATTGTTACATGCCATTG 1289
Query 1486 A-GCAGATTCTTGAGTTTAATTTGGTGCAAAGAATCTATTCAATAATGAGCAAC-AAGAG 1543
| | || ||||||||||| ||||||||| ||||||| ||||||| ||| || || || ||
Sbjct 1290 ATGAAG-TTCTTGAGTTTGATTTGGTGCGAAGAATCCATTCAATTATGTGC-ACAAAAAG 1347
Query 1544 TGTGAAGCCAAATAGTGAG-ACTTTCAGGA-AATCTATAAATTTGTGCATAAGAATCAAA 1601
|||||| ||||||| |||| || ||| ||| || |||| |||||||| ||||||||||
Sbjct 1348 TGTGAAACCAAATACTGAGAAC-TTCCGGAGCAT-TATACGTTTGTGCACAAGAATCAAA 1405
Query 1602 GATTTTGAAGGTGCATATAAC-ATGCTTGGTAATTTAAAGAATTTCAATTTGGCACCGAA 1660
||||||||||||||||||| | ||||||||||||||||| || |||||||||| ||||||
Sbjct 1406 GATTTTGAAGGTGCATATA-CTATGCTTGGTAATTTAAAAAACTTCAATTTGGAACCGAA 1464
Query 1661 CTCTAGCATGTACAATTCTATAATGGCAGGATATTTCCGGGAGAAAAAAGTGAACAGTGC 1720
||||||||||| ||||| |||| |||| |||||||| |||||||||| |||| || ||
Sbjct 1465 CTCTAGCATGTTCAATTGTATATTGGCTGGATATTTTAGGGAGAAAAATGTGAGTAGGGC 1524
Query 1721 CTTAAAGGTCCTCAAGGAAATGAAAGAAGCTGATGTTAAACCTGATTCGGTGACTTTTAG 1780
|||| |||| ||||| ||||||| ||||||| |||||||||||||| | |||||| |
Sbjct 1525 GTTAATGGTCGTCAAGCAAATGAAGGAAGCTGGCGTTAAACCTGATTCCATAACTTTTGG 1584
Query 1781 CTATCTAATAAACTATTGTGG-CGAGGAGG-CGACTATTGCGAAGTATTATAAGGAGATG 1838
|||||||||||| | ||| || ||||| || ||||| | ||||| || | ||||||
Sbjct 1585 TTATCTAATAAACAACTGTAAACG-GGAGGACG-CTATTACTAAGTACTACGACGAGATG 1642
Query 1839 AAGCAAGCAGGAGTTGAAGTTAATAAGC-ACGTTTACATGTCCCTTGTTAAA-GCATATG 1896
||||||||||||||| ||| || ||||| | ||||||||||||| | || | |||||||
Sbjct 1643 AAGCAAGCAGGAGTTCAAGCTACTAAGCGAA-TTTACATGTCCCT-GATAGATGCATATG 1700
Query 1897 CATCATGC-GG-ACAGTTTGAAAAGGCAAAACAGGTGCTCATGGA-CCTGGAAGTTCCGG 1953
|| ||| | || | ||||||| ||||| |||||||||||| | || || | | |||||||
Sbjct 1701 CAGCAT-CTGGGA-AGTTTGAGAAGGCGAAACAGGTGCTCGTAGATCCAG-ATGTTCCGG 1757
Query 1954 CTA-AGGATCACAATGAGCTGAAAAGTGTACTTATATCTGCTCTGGCATCAAATGGAAAT 2012
||| | | || ||||| ||||||||||| ||||| || ||||| |||||| ||||||
Sbjct 1758 CTATAA-ACCAAAATGAACTGAAAAGTGTGCTTATTTCGGCTCTTGCATCACGTGGAAA- 1815
Query 2013 ATAA-CAGAGGCTTTA-AGTATTTATGAAGAAATGAAGAAA-CTCCGCTGCCCCGTAGAG 2069
|| |||| || ||| | ||| ||||||||||||| |||| || |||| ||||||
Sbjct 1816 ATGGGCAGATGCCTTACA-TATATATGAAGAAATGAGGAAAGCTGAA-TGCCACGTAGAC 1873
Query 2070 CCAAAAGCTATCT-TATCTCTTATAGAGA-ACTCTGATTCAAACGCAGAGCTGGGAACGT 2127
|| ||| | || | ||||||||||||| | ||||||||||||| | |||| | | |||
Sbjct 1874 CCGAAATCGAT-TATATCTCTTATAGA-ATACTCTGATTCAAATGGAGAGTTAAGTACGC 1931
Query 2128 TGGTTGAACTCACTCATGAGCTGC--G-TGATTCTAAATTTTGGATAGATGGTTTCTTCA 2184
| ||| |||| || |||| || | | |||| ||| || ||||||||||||||||||
Sbjct 1932 TAGTTCAACTGGCTGATGACCTACAAGATGATACTAG-TT--GGATAGATGGTTTCTTCA 1988
Query 2185 AAATTATCGTGTTTGCTGTTCGCAACA-ATAGATCAAGCTCTATTCTGGATTTGTT-AGA 2242
||| ||| |||| ||||| ||||| | | || || ||| |||| | |||||| | | |
Sbjct 1989 GAATGATCTTGTTCGCTGTCCGCAATAGAAAG-TCTAGCAATATTGTTGATTTGCTGAAA 2047
Query 2243 GCAGACCAAAAACCACTTGTCCAAGGATGACGT-CGGTGTGGAATATTGGTTT-GAAGAG 2300
|||| ||| || |||| ||| | ||| | | ||||||| | | ||| || |||
Sbjct 2048 -CAGAACAAGGTCCGGTTGTTAAAGAAAGACTTGCC-TGTGGAA-ACTCATTTTGACGAG 2104
Query 2301 GTGTTTAAGTCAATAGCGGAAACAGAGTCTAGTGATGTGAAGGTAGGGCTGGACTTGGTG 2360
|||||| | |||| || || |||||| | | | ||| || |||| |||| ||| |
Sbjct 2105 GTGTTTTGGGCAATCGCAGAGACAGAGCCAACCAAAGTGCAGCTAGGAATGGATTTGCTA 2164
Query 2361 AGTTTTATGAAAGAAGAGCTTGAGTTATGT-CCTTCAAGAAAATGTCTGGATTTTCTTCT 2419
|| ||||||||||| ||||||| ||| ||| ||||||||||||||||| |||||||| ||
Sbjct 2165 AGATTTATGAAAGATGAGCTTGGGTT-TGTTCCTTCAAGAAAATGTCTAGATTTTCT-CT 2222
Query 2420 -ACATGCTTGTGTCAATGCCAAAGATAAGCAG-AGCG-CTCTACTGGTATGGGAAGAGTA 2476
|||||| ||||| |||||||| || | || | || | ||| |||| ||| |||||||
Sbjct 2223 TACATGCATGTGTTAATGCCAAGGACCTGGAGCA-CGGC-CTATTGGTGTGGAAAGAGTA 2280
Query 2477 CCAATGTGCAGAACTTCCTTACAATGTCATCAA-CTATT-TAAGGATGTATCAGGTTCTA 2534
||||| ||||| ||| |||| ||| ||| | || || || | ||||||||||||||||||
Sbjct 2281 CCAATCTGCAGCACTCCCTTGCAACGTCCT-AAGCT-TTCTGAGGATGTATCAGGTTCTA 2338
Query 2535 GTAGCTGCAGGAGATTCGAAAAGTGC-AGAGGCAATAGTATCAAAGATTCCTAATGATGA 2593
|||||||||| |||||| || |||| | ||||| | |||||||| ||||| || |||||
Sbjct 2339 CTAGCTGCAGGGGATTCGGAAGGTGCCA-AGGCATTGGTATCAAAAATTCCAAAAGATGA 2397
Query 2594 TAAAGATGT-CAA 2605
||||||||| |||
Sbjct 2398 TAAAGATGTACAA 2410
> Ahg354584 jgi|Araly1|354584|fgenesh1_pg.C_scaffold_7001757
Length=1167
Score = 183 bits (99), Expect = 4e-45
Identities = 111/117 (95%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1394 GGTGGTCACTGCTCTTGATATAGTTGAAAATATGTGTGAAGCAGGTCTGGTAATATCAGC 1453
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1110 GGTGGCCACTGCTCTTGATGTAGTTGAAAATATGTGTGAAGCAGGTCTGGTAATATCGGC 1051
Query 1454 AAACATCCTGCACTCATTGTTACAGGCCATTGAGCAGATTCTTGAGTTTAATTTGGT 1510
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1050 GAACATCTTGCACTCATTGTTACATGCCATTGAGCAGATTCTTGAGTTTAATTTGGT 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101929495620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5