BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21890.1
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492682 jgi|Araly1|492682|fgenesh2_kg.7__2115__AT4G21890.1 1273 0.0
> Ahg492682 jgi|Araly1|492682|fgenesh2_kg.7__2115__AT4G21890.1
Length=838
Score = 1273 bits (689), Expect = 0.0
Identities = 796/847 (94%), Gaps = 10/847 (1%)
Strand=Plus/Plus
Query 215 GGGGAAGTTTCAAGAATGGATTTGCATTTGAAGAACTTATTTGGTAGGTTTCAGGAACAA 274
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1 GGGGAAGTTTGAAGAATGGATTTGCATTTGAAGAACTTGTTTGGTAGGTTTCAGGATCAA 60
Query 275 TTCGGGTCAGGTCCGGGTCTTGGACCTGGATCCGGTGTTTGCTTGATGATAGTTGAAGGT 334
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TTCGGGTCAGGTCCGGGTCTTGGACCTGGATCCGGTGTTTGCTTGATGAAAGTTGAAGGT 120
Query 335 ATATCTTCCAACATTATTCAATCTATATTTAGAGCTTCAGCTTCTTTATACAGTAGTGAG 394
||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 121 ATATCTTCCAACATTATTCAATCCATTTTTAGAGCTTCAGCTTCTTTATACAGAAGTGAG 180
Query 395 CCATGGAAGAGGCTCAGACCAGGTCATTTATTCGGTGTTCGGGTTGGCAAAGACTCAGAT 454
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 181 CCATGGAAGAGGCTCAGACCGGGTCATTTGTTCGGTGTTCGGGTTGGGAAAGACTCAGAT 240
Query 455 TGGTCGGGAAAGAGACAGCCTTTTCAATGTGTTCAGTTCATAGGAGGTGATGGTGGTGAT 514
||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 241 TGGTCAGGAAAGAGACAGCCTTTTCAATGTGTTCAGTTCATAGGAGTTGGTGGTGGTGAT 300
Query 515 ATAGCAATCTATATGTATAGGTCCATGAGCTATGCACTGAAAATGACTGATGGTGATTCA 574
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 ATAGCTATCTATATGTATAGGTCCATGAGCTATGCACTGAAAATGACTGATGATGATTCA 360
Query 575 TGGGAAATGGCTAGAGATCCTAATGTTGAGGTCTTTAGAGTTACTTATGAGCTTGAGTCA 634
|||||||||||||||| ||||||||||||||| ||||| |||||||||||| ||| ||
Sbjct 361 TGGGAAATGGCTAGAGTTCCTAATGTTGAGGTATTTAGGGTTACTTATGAGAGTGAATCG 420
Query 635 TTGATGCTTCCTTCTAACAAGAGGATGGTTAAGTCTTTGTCTTTAGAAGTTTCTGGAACT 694
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCATGCTTCCTTCTAACAAGAGGATGGTTAAGTCTTTGTCTTTAGAAGTTTCTGGAACT 480
Query 695 GATCGGTTTCC-GATTATGGATGTTGCGCGGTGTATGACCTCTGGTGAGCTCCAGTTCAG 753
||||||||||| | | || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 481 GATCGGTTTCCTG-TCATCGATGTTGCGCGGTGCATGACCTCTGGTGAGCTCCAGTTCAG 539
Query 754 AAGCCCGACACTTGAAGAGCTTAGGCTTGTGTTTGCTGTGATGAAAGCTCTCTCTTTGGT 813
|||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 540 AAGCCCGACACTCGAAGAGCTGAGGCTTGTGTTTGCTGTGATGAAAGCTCTTTCTTTGGT 599
Query 814 TCATCCTTTGCTGCTTCAAGAGGAGAAGCAAGTCAGGGGATTGCCAAGGATGATAAAGTT 873
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 600 TCATCCTTTGCTGCGTCAAGAGGAGAAGCAAATCAGGGGATTGCCAAGGATGATAAAGTT 659
Query 874 TTCACCTTTTATTGAGACTGTCGATGTTCAGTGGCCATCAGAGATGGGTAAAGGTCATGA 933
|||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 660 TTCACCTTTTATCGAAACTGTCGATGTTCAGTGGCCATCAGAGATGTTTAAAGGTCATGA 719
Query 934 TTTTGTTGCTGTTACGGTCTCACATCCTCCAGGTCAATCATATGAACAGAAGCGCGAAGA 993
|||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 720 TTTTGTTGCTGTCACGGTCTCTCATCCTCCCGGTCAATCATATGAACAGAAGCGCGAAGA 779
Query 994 TGACGAGTTGGAAATAGTTTCAGGCATGACCGCATGATCAATCTGCGAGTTGGTCAAGGT 1053
||| ||||||||||||||||| || ||||||||||||||||||| |||||||||
Sbjct 780 TGATGAGTTGGAAATAGTTTC-----TG---GCATGATCAATCTGCGAGTAGGTCAAGGT 831
Query 1054 GGAGAAG 1060
| |||||
Sbjct 832 GCAGAAG 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39495342012
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5