BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21890.1 Length=1061 Score E Sequences producing significant alignments: (Bits) Value Ahg492682 jgi|Araly1|492682|fgenesh2_kg.7__2115__AT4G21890.1 1273 0.0 > Ahg492682 jgi|Araly1|492682|fgenesh2_kg.7__2115__AT4G21890.1 Length=838 Score = 1273 bits (689), Expect = 0.0 Identities = 796/847 (94%), Gaps = 10/847 (1%) Strand=Plus/Plus Query 215 GGGGAAGTTTCAAGAATGGATTTGCATTTGAAGAACTTATTTGGTAGGTTTCAGGAACAA 274 |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 1 GGGGAAGTTTGAAGAATGGATTTGCATTTGAAGAACTTGTTTGGTAGGTTTCAGGATCAA 60 Query 275 TTCGGGTCAGGTCCGGGTCTTGGACCTGGATCCGGTGTTTGCTTGATGATAGTTGAAGGT 334 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 61 TTCGGGTCAGGTCCGGGTCTTGGACCTGGATCCGGTGTTTGCTTGATGAAAGTTGAAGGT 120 Query 335 ATATCTTCCAACATTATTCAATCTATATTTAGAGCTTCAGCTTCTTTATACAGTAGTGAG 394 ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| Sbjct 121 ATATCTTCCAACATTATTCAATCCATTTTTAGAGCTTCAGCTTCTTTATACAGAAGTGAG 180 Query 395 CCATGGAAGAGGCTCAGACCAGGTCATTTATTCGGTGTTCGGGTTGGCAAAGACTCAGAT 454 |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| Sbjct 181 CCATGGAAGAGGCTCAGACCGGGTCATTTGTTCGGTGTTCGGGTTGGGAAAGACTCAGAT 240 Query 455 TGGTCGGGAAAGAGACAGCCTTTTCAATGTGTTCAGTTCATAGGAGGTGATGGTGGTGAT 514 ||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 241 TGGTCAGGAAAGAGACAGCCTTTTCAATGTGTTCAGTTCATAGGAGTTGGTGGTGGTGAT 300 Query 515 ATAGCAATCTATATGTATAGGTCCATGAGCTATGCACTGAAAATGACTGATGGTGATTCA 574 ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 301 ATAGCTATCTATATGTATAGGTCCATGAGCTATGCACTGAAAATGACTGATGATGATTCA 360 Query 575 TGGGAAATGGCTAGAGATCCTAATGTTGAGGTCTTTAGAGTTACTTATGAGCTTGAGTCA 634 |||||||||||||||| ||||||||||||||| ||||| |||||||||||| ||| || Sbjct 361 TGGGAAATGGCTAGAGTTCCTAATGTTGAGGTATTTAGGGTTACTTATGAGAGTGAATCG 420 Query 635 TTGATGCTTCCTTCTAACAAGAGGATGGTTAAGTCTTTGTCTTTAGAAGTTTCTGGAACT 694 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TTCATGCTTCCTTCTAACAAGAGGATGGTTAAGTCTTTGTCTTTAGAAGTTTCTGGAACT 480 Query 695 GATCGGTTTCC-GATTATGGATGTTGCGCGGTGTATGACCTCTGGTGAGCTCCAGTTCAG 753 ||||||||||| | | || |||||||||||||| |||||||||||||||||||||||||| Sbjct 481 GATCGGTTTCCTG-TCATCGATGTTGCGCGGTGCATGACCTCTGGTGAGCTCCAGTTCAG 539 Query 754 AAGCCCGACACTTGAAGAGCTTAGGCTTGTGTTTGCTGTGATGAAAGCTCTCTCTTTGGT 813 |||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 540 AAGCCCGACACTCGAAGAGCTGAGGCTTGTGTTTGCTGTGATGAAAGCTCTTTCTTTGGT 599 Query 814 TCATCCTTTGCTGCTTCAAGAGGAGAAGCAAGTCAGGGGATTGCCAAGGATGATAAAGTT 873 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 600 TCATCCTTTGCTGCGTCAAGAGGAGAAGCAAATCAGGGGATTGCCAAGGATGATAAAGTT 659 Query 874 TTCACCTTTTATTGAGACTGTCGATGTTCAGTGGCCATCAGAGATGGGTAAAGGTCATGA 933 |||||||||||| || |||||||||||||||||||||||||||||| |||||||||||| Sbjct 660 TTCACCTTTTATCGAAACTGTCGATGTTCAGTGGCCATCAGAGATGTTTAAAGGTCATGA 719 Query 934 TTTTGTTGCTGTTACGGTCTCACATCCTCCAGGTCAATCATATGAACAGAAGCGCGAAGA 993 |||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 720 TTTTGTTGCTGTCACGGTCTCTCATCCTCCCGGTCAATCATATGAACAGAAGCGCGAAGA 779 Query 994 TGACGAGTTGGAAATAGTTTCAGGCATGACCGCATGATCAATCTGCGAGTTGGTCAAGGT 1053 ||| ||||||||||||||||| || ||||||||||||||||||| ||||||||| Sbjct 780 TGATGAGTTGGAAATAGTTTC-----TG---GCATGATCAATCTGCGAGTAGGTCAAGGT 831 Query 1054 GGAGAAG 1060 | ||||| Sbjct 832 GCAGAAG 838 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39495342012 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5