BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21895.1
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354584 jgi|Araly1|354584|fgenesh1_pg.C_scaffold_7001757 929 0.0
> Ahg354584 jgi|Araly1|354584|fgenesh1_pg.C_scaffold_7001757
Length=1167
Score = 929 bits (503), Expect = 0.0
Identities = 653/723 (90%), Gaps = 19/723 (3%)
Strand=Plus/Plus
Query 36 TGAATCAGCAGAATCAAGACATCATGAACTCACCTCCTCCTTCTTCTAATGATGGCTTGG 95
|||| |||||||||||||||| |||||||||||||||| || || |||||||||||||||
Sbjct 2 TGAACCAGCAGAATCAAGACACCATGAACTCACCTCCTTCTGCTGCTAATGATGGCTTGG 61
Query 96 CGAAGCGAAAAAGAGGTCGACCGCGCAAAGATGAAAACTCAACTCCAAAACCGGACATGA 155
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 62 CTAAGCGAAAAAGAGGCCGACCGCGCAAAGATGAAAACTCAACTCCAAAACCGGACACCA 121
Query 156 ATTTGGTAGGTAAGGTGGTTACTGGTGTAATCGAAGGATCTTTCGACGCAGGCTATCTCC 215
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 122 ATTTGGTAGGTAAGGTGGTTACTGGTGTAGTCGAAGGATCTTTCGACGCAGGCTATCTCC 181
Query 216 TTAACGTTAAGGTTAAAGACAGTGACACCCAACTCAGAGGTCTCGTGTTCATACGGGGCA 275
|||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 182 TTAATGTTAAGGTTAAAGACAGTGACACCAAACTCAGAGGTCTCGTGTTCATACCGGGCA 241
Query 276 GAGTCACTCCGATCACTCCAGAAAACGACGTGGCTCCTCTTGTTAAAATGTACGGAAGAG 335
|||||| |||||| ||||||||||| || |||||||||||||||||||| |||| |||||
Sbjct 242 GAGTCAATCCGATTACTCCAGAAAATGATGTGGCTCCTCTTGTTAAAATATACGAAAGAG 301
Query 336 AAGATATCAAGAACAACCAAACCGATCATTCTTTCCCTACTGATCAACCAATGCAAGATG 395
|||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 302 AAGATATCAAGAACAACCAAGCTGATCATTCTTTCCCTACTGATCAACCAATGAAAGATG 361
Query 396 CTGCTGTCACTACTACTGACATGGATATTTCTGAATCCTCTCGAGCTTTGGTCGTAGTTC 455
|||||||||||||| ||| ||||||||||||||||| |||||||||||||| |||| |
Sbjct 362 CTGCTGTCACTACT---GACTTGGATATTTCTGAATCCACTCGAGCTTTGGTCCTAGTGC 418
Query 456 CACAAGCGACCAATGGCCAAGCG-AAGGAAGCTACGAAGGATGAA-GATGGAGTCATTGA 513
||||||| | |||||||||| || ||| ||||||||| ||| ||| |||||||||||||
Sbjct 419 CACAAGCTAGCAATGGCCAACCGGAAG-AAGCTACGATGGA-GAAAGATGGAGTCATTGC 476
Query 514 AGGACAAGCTGACACTCGGTTAGTGGAGTTTTTTCCAACTCCAGGCACAATGATGATGAC 573
| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 477 ACAACATGCTGACACTCGGTTAGTGGAGTTTTTTCCAACTCCAGGGACAATGATGATGAC 536
Query 574 ---TGCTCAACCAAATCTTGTCTTGGTACCGAAAGAGACAGAACAACAGAAAACAACT-G 629
||||||||| ||| ||||||||||||||||||||||||||||| |||| | || |
Sbjct 537 GACTGCTCAACCGAATTTTGTCTTGGTACCGAAAGAGACAGAACAAGGGAAATCT-CTTG 595
Query 630 GTGGGAGTCATGGATTCGATCTTATGGA-AGAGGAACCAGTTCGTCAAGGAGAGAA-GTT 687
||| | || ||||||||||||||||| | ||||||| ||| ||||||||||||| ||
Sbjct 596 GTGAAACTCGTGGATTCGATCTTATGGCCA-AGGAACCGGTTTGTCAAGGAGAGAAAGT- 653
Query 688 GCCAGAGGAGCTATTACATCTAGAGCTTGGAAACAAGACAACATTGAGTGTAGACAACAA 747
||||||| |||| | || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 654 GCCAGAGCAGCT-T--CAGCTAGAGCTTGGAAACAAGACAACATTGAGTGGAGACAACAA 710
Query 748 CAT 750
|||
Sbjct 711 CAT 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36674246154
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5