BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21900.1 Length=1953 Score E Sequences producing significant alignments: (Bits) Value Ahg889984 jgi|Araly1|889984|Al_scaffold_0007_1970 2399 0.0 Ahg931493 jgi|Araly1|931493|scaffold_303950.1 1519 0.0 > Ahg889984 jgi|Araly1|889984|Al_scaffold_0007_1970 Length=1554 Score = 2399 bits (1299), Expect = 0.0 Identities = 1473/1558 (95%), Gaps = 8/1558 (1%) Strand=Plus/Plus Query 179 ATGGCTGGTACTGATAACCGCCGCTCTCGCCACGACGACGAAAGCCC-TAAAAATCCCAA 237 ||||| ||||||||| ||||||||||||||||| | ||||||||||| | |||| || || Sbjct 1 ATGGCCGGTACTGATCACCGCCGCTCTCGCCACCATGACGAAAGCCCTTCAAAA-CCTAA 59 Query 238 CAAGAAGAAGAAAGGAAACCGTAATCCAGAAAAGAGTCTCCTTATCAATCTTCATTCATG 297 ||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||| || Sbjct 60 CAAGAAGCAGAAGGGAAGCCGCAATCCAGAAAAGAGTCTCCTTATCAATCTTCATTCTTG 119 Query 298 TTCCAAGAGAAAGGATCTCTCAGCTGCATTGGCTCTTTATGATGCAGCTATCACTTCCAG 357 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 120 TTCCAAGAGAAAGGACCTCTCAGCTGCGTTGGCTCTTTATGATGCAGCTATCACTTCCAG 179 Query 358 TGACATTCGCCTCAACCAGCAACACTTCCAATCCCTTCTTTACCTCTGCTCCGCGTTCAT 417 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 180 TGACATCCGCCTCAACCAGCAACACTTCCAATCCCTTCTTTATCTCTGCTCCGCGTTCAT 239 Query 418 TAGTGACCCATCTCTTCAAAC-CGTTGCCATTGACCGTGGCTTTCAAATTTTTGACCGTA 476 ||||||||||||||||||||| | ||||||||||||| || ||||||||||||||||||| Sbjct 240 TAGTGACCCATCTCTTCAAACAC-TTGCCATTGACCGGGGTTTTCAAATTTTTGACCGTA 298 Query 477 TGGTTAGTTCTGGGATAAGTCCTAATGAATCATCTGTCACTGCAGTTGCACGACTAGCTG 536 |||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||| Sbjct 299 TGGTTAGTTCAGGGATAAGTCCCAATGAATCATCCGTCACTGCAGTGGCACGACTAGCTG 358 Query 537 CTGCCAAGGGTGATGGAGACTATGCTTTCAAGCTTGTTAAAGACCTTGTTGCT-GTTGGT 595 ||||||||||||| || || ||||||||||||||||| ||||| |||| | | ||||| Sbjct 359 CTGCCAAGGGTGACGGTGATTATGCTTTCAAGCTTGTCAAAGATATTGTCG-TGGTTGGC 417 Query 596 GGTGTATCGGTCCCTCGTCTGAGAACTTATGCTCCGGCTTTGCTCTGTTTCTGTGATACT 655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 418 GGTGTATCGGTCCCTCGTCTGAGAACTTATGCTCCGGCTTTGCTCTGTTTCTGTGAGAGT 477 Query 656 TTGGAGGCTGAAAAGGGTTATGAAGTGGAAGATCACATGGATGCTTCAGGTATTGTGTTG 715 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 478 TTGGAGGCTGAGAAGGGTTATGAAGTGGAAGAGCACATGGATGCTTCAGGTATTATGTTG 537 Query 716 GAGGAGGCAGAGATCTCGGCTTTGCTAAAGGTAAGCGCTGCCACAGGCCGAGAAAACAAG 775 ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| Sbjct 538 GAGGAGGCAGAGATCTCTGCTTTGCTGAAGGTAAGCGCTGCCACGGGCCGAGAAAACAAG 597 Query 776 GTTTATAGATATCTGCAGAAGTTAAGAGAATGTGTTGGCTGCGTTAGTGAAGAAACTTCA 835 |||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 598 GTTTATAGATATTTGCATAAATTAAGAGAATGTGTTGGCTGCGTTAGTGAAGAAACTTCA 657 Query 836 AAAGCAATCGAGGAATGGTTTTATGGAGTGAAAGCTAGCGAAGTTAGTGATAATGG-GAT 894 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 658 AAAACAATCGAGGAATGGTTTTATGGAGTGAAAGCTAGCGAAGTTAGTGATAA-GGCGAT 716 Query 895 TGGTTCTGATATTGAGCTGCTTAGAGCAGCTGTTTTGAAAAATGGGGGTGGGTGGCATGG 954 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 717 TGGTTCTGATATTGAGCTGCTTAGAGCAGCTGTTTTGAAGAATGGGGGTGGGTGGCACGG 776 Query 955 TCTTGGGTGGGTTGGAGAAGGCAAATGGATTGTGAAGAAAGGTAATGTTAGCTCAGCCGG 1014 |||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 777 TCTTGGTTGGGTTGGGGAAGGCAAATGGATTGTGAAGAAAGGTAATGTTAGCCCAGCCGG 836 Query 1015 GAAATGTTTGAGCTGTGATGAGCATTTGGCTTGTGTTGATACCAATGAGGTAGAGACTGA 1074 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 837 AAAATGTTTGAGCTGTGGTGAGCATTTGGCTTGTGTTGATACCAATGAGGTAGAGACTGA 896 Query 1075 AGATTTTGTGAATTCTTTGGTGACTTTGGCTATGGAGAGGAAGGCAAAGATGAATTCATG 1134 | |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 897 AAATTTTGTGAATTCTTTGGTGGCTTTGGCTATGGAGAGGAAGGCGAAGATGAATTCATG 956 Query 1135 CGAGCCTATGGCGGATTTCAGTGAGTTTCAGGAGTGGCTTGAAAAGCATGGAGATTACGA 1194 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 957 CGAGCCTATGGCGGATTTCAGCGAGTTTCAGGAGTGGCTTGAAAAGCATGGAGACTACGA 1016 Query 1195 AGCTATACTAGATGGAGCAAATATTGGGCTCTACCAACAAAATTTTGCAGATGGTGGTTT 1254 |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| || Sbjct 1017 AGCTATACTAGATGGAGCAAATATTGGGCTTTACCAACAAAATTTTACAGATGGTGGCTT 1076 Query 1255 CAGTCTACCACAGCTTGAAGCTGTAGTGAAGGAACTTTACAATAAAAGTGGTAGCAAAAA 1314 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1077 CAGTCTACCACAGCTTGAAGCTGTAGTGAAGGAACTTTACAATAAAAGTGGTAACAAAAA 1136 Query 1315 ACAGCCGCTAATTCTCTTGCACAAGAAACGGGTCAATGCGCTTTTAGAAAACCCGAATCA 1374 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 1137 ACAGCCGCTAATTCTCTTGCACAAGAAACGGGTCAATGCACTTTTAGGAAACCCGAATCA 1196 Query 1375 CCGGAATCTTGTGGAAGAATGGATTAATAACAATGTCCTGTATGCGACTCCACCAGGTTC 1434 ||||||||| ||||| ||||||||| ||||||||||||| || ||||| ||||||||||| Sbjct 1197 CCGGAATCTGGTGGAGGAATGGATTGATAACAATGTCCTTTACGCGACCCCACCAGGTTC 1256 Query 1435 CAATGATGATTGGTATTGGCTCTACGCTGCTGCTAAACTCAAGTGTTTACTTGTGACTAA 1494 ||| ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| Sbjct 1257 CAACGATGATTGGTATTGGCTGTATGCTGCTGCTAAACTCAAGTGTTTGCTTGTGACTAA 1316 Query 1495 TGATGAGATGAGAGATCACATTTTTGAACTATTAAGTAACAGTTTCTTCCAAAAATGGAA 1554 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1317 TGATGAGATGAGAGATCACATTTTTGAACTATTAAGTAATAGTTTTTTCCAAAAATGGAA 1376 Query 1555 AGAAAGACATCAAGTTCGGTTTACCTTTGTGAAAGGCTGTCTCAAGCTTGAAATGCCACC 1614 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 AGAAAGACATCAAGTGCGGTTTACCTTTGTGAAAGGCTGTCTCAAGCTTGAAATGCCACC 1436 Query 1615 TCCTTTTTCAGTTGTGATCCAGGAATCGGAGAAAGGATCATGGCACGTTCCAATCACGAG 1674 ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 1437 TCCTTTTTCAGTTGTGATCCAGGAATCAGAGAAAGGATCATGGCACATTCCAATCACGAG 1496 Query 1675 TCAAGACAAGGAGGAATCTTTAAGAAGTTGGATGTGCATTACAAGGCAGAGTTCATAG 1732 ||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 1497 TCAAGACAATGAGGAATCTTCAAGAAGTTGGATGTGCATTACAAGGCAGAGTTTATAG 1554 > Ahg931493 jgi|Araly1|931493|scaffold_303950.1 Length=1637 Score = 1519 bits (822), Expect = 0.0 Identities = 1351/1599 (84%), Gaps = 65/1599 (4%) Strand=Plus/Plus Query 178 CATGGCTGGTACTGAT-AACCGCCGCTCTCGCCACGACGACGAAAGC-CCTAAAAATCCC 235 |||||||| | ||||| || | ||||||||||||| ||||||||||| | | || | ||| Sbjct 20 CATGGCTGCTTCTGATCAA-CACCGCTCTCGCCACCACGACGAAAGCTCTTCAAGA-CCC 77 Query 236 AACAAGAAGAAGAAAGGA-AA-CCGTAA-TCCAGAAA-AGAGTCTCCT-TATCAATCTTC 290 |||||||||||| || || || | | || || |||| | | |||||| | |||| | || Sbjct 78 AACAAGAAGAAG-AA-GATAAGCAG-AAGCCCTGAAACA-AATCTCCTCT-TCAA-CCTC 131 Query 291 -ATTCATGTTCCAAGAGAAAGGATCTCTCAGCTGCATTGGCTCTTTATGATGCAGCTATC 349 |||||||||||||| ||||| |||||||||||||| || |||||||||||||| || Sbjct 132 AATTCATGTTCCAAGTCCAAGGACCTCTCAGCTGCATTAGCCCTTTATGATGCAGCCGTC 191 Query 350 ACTTCCAGTGACATT-CGCCTCAACCAGCAACACTTCCA-ATCCCTTCTTTACCTCTGCT 407 |||||||| || ||| ||||||| ||||||||| || || | | ||| | ||||| |||| Sbjct 192 ACTTCCAGCGA-ATTACGCCTCAGCCAGCAACATTTTCAGA-CGCTTGTGTACCTATGCT 249 Query 408 CCGCGTTC-ATTAGTGACCCATCTCTTC-AAACCGTTGCCATTGACCGTGGCTTTC-AAA 464 | || ||| ||||||||| ||||||||| | || |||||||||||||||| |||| | | Sbjct 250 CTGC-TTCTATTAGTGACACATCTCTTCGGAGCC-TTGCCATTGACCGTGG-TTTCGAGA 306 Query 465 TTTTTGACCGTATGGTTAGTTCTGGGATAAGTCCTAATGAATCATCTGTCACTGCAGTTG 524 ||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||| | Sbjct 307 TTTTTGATCGTATGGTTAGTTCGGGGATAAGTCCTAATGAGGCATCTGTCACTTCAGTGG 366 Query 525 C-ACGACTAGCTGCTGCCAAGGGTGATGGAGACTATGCTTTCAAGCTTGTTAAAGACCTT 583 | | | | |||||||| ||||||||||| || |||||||||||| ||||||| || || Sbjct 367 CTA-GGTTGGCTGCTGCTAAGGGTGATGGTGATTATGCTTTCAAGGTTGTTAAGGATTTT 425 Query 584 GTTGCTGTTGGTGGTGTATCG-GTCCCTCGTCTGAGAACTTATGCTCCGGCTTTGCTCTG 642 ||| ||||||| ||||| ||| |||| |||||||| || ||||| |||||||||||||| Sbjct 426 GTTTCTGTTGGCGGTGTGTCGATTCCC-CGTCTGAGGACCTATGCGCCGGCTTTGCTCTG 484 Query 643 TTTCTGTGATACTTTGGAGGCTGAAAAGGGTTATGAAGTGGAAGATCACATGGATGCTTC 702 ||||||||| | ||||||||||||||||||||||| |||||||| |||||||| ||| | Sbjct 485 TTTCTGTGAGAGATTGGAGGCTGAAAAGGGTTATGAGGTGGAAGAGCACATGGAAGCTGC 544 Query 703 AGGTATTGTGTTGGAGGAGGCAGAGATCTCGGCTTTGCTAAAGGTAAGCGCTGCCACAGG 762 ||| |||| ||||||||||||||||||| ||||||| | ||||| ||||||||||| || Sbjct 545 AGGAATTGAATTGGAGGAGGCAGAGATCTTGGCTTTGTTGAAGGTTAGCGCTGCCACGGG 604 Query 763 CCGAGAAAACAAGGTTTATAGATATCTGCAGAAGTTAAGAGAATGTGTTGGCTGCGTTAG 822 ||||||||||||||||||||||||| | || ||||| || |||| ||||||||||||| | Sbjct 605 CCGAGAAAACAAGGTTTATAGATATTTACATAAGTTGAGGGAATATGTTGGCTGCGTTTG 664 Query 823 TGAAGAAAC-TTCAAAAGCAATCGAGGAATGGTTTTATGGAGTGAAAGCTAGCGAAG-TT 880 ||||||||| || |||| ||| || |||||||| | ||||| ||||||| | | || || Sbjct 665 TGAAGAAACTTTGAAAA-TAATTGAAGAATGGTTCTGTGGAGAGAAAGCTGGTG-AGCTT 722 Query 881 AGTGATAATGGGATTGGTTCTGATATTGAGCTGCTTAGAGCAGCTGTTTTGAAAAATGGG 940 |||| |||||| |||||||||||| ||| | ||||||||| |||||||||||| ||||| Sbjct 723 AGTGGTAATGGAATTGGTTCTGATGTTGGGATGCTTAGAGAAGCTGTTTTGAAGAATGGA 782 Query 941 GGTGGGTGGCATGGTCTTGGGTGGGTTGGAGAAGGCAAATGGATTGTGAAGAAAGGTAAT 1000 ||||||||||| || | |||||||||||| || |||||||||||||| |||||||||||| Sbjct 783 GGTGGGTGGCACGGGCATGGGTGGGTTGGTGAGGGCAAATGGATTGTTAAGAAAGGTAAT 842 Query 1001 GTTAGCTCAGCCGGGAAATGTTTGAGCTGTGA-TGAGCATTTGGCTTGTGTTGATACCAA 1059 ||||||||| |||| |||||||||||||| | |||||| ||||||||||| |||||||| Sbjct 843 GTTAGCTCAACCGGAAAATGTTTGAGCTG-CAGTGAGCAGTTGGCTTGTGTAGATACCAA 901 Query 1060 TGAGGT--AGAGACTGAAGATTTTGTGAATTCTTTGGTGACTTTGGCTATGGAGAGGAAG 1117 |||||| | | || |||| |||||| ||||||||||| |||||||||||||||||||| Sbjct 902 TGAGGTGGAAACACAGAAG--TTTGTGGATTCTTTGGTGGCTTTGGCTATGGAGAGGAAG 959 Query 1118 GCAAAGATGAATTCATGCGAG-C-CTATGGCGGAT-TTCAGTGAGTTTCAGGAGTGGCTT 1174 ||||||||||||||||||||| | | | || || | ||||| ||||| ||||| |||||| Sbjct 960 GCAAAGATGAATTCATGCGAGACGC-A-GGTGG-TCTTCAGCGAGTTCCAGGACTGGCTT 1016 Query 1175 GA-AAAGCATGGAGATTACGAAGCTATACTAGATGGAGCAAATATTGGGCTCTACCAACA 1233 || ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1017 GAGAAA-CATGGAGATTACGAAGCTATAGTAGATGGAGCAAATATTGGGCTCTACCAACA 1075 Query 1234 AAATTTTGCAGATGGTGGTTTCAGTCTACCACAGC---TTGAAGCTGTAGTGAAGGAACT 1290 |||||||| |||||| ||||||||||| ||||||| ||||| |||| ||||||||||| Sbjct 1076 AAATTTTGTAGATGGCGGTTTCAGTCTTCCACAGCAGCTTGAATCTGTGGTGAAGGAACT 1135 Query 1291 TTACAATAAAAGTGGTAGCAAAAAACAGCCGCTAATTCTCTTGCACAAGAAACGGGTCAA 1350 |||| | ||||||||| || ||| ||| |||||||| |||||||||| |||||||| Sbjct 1136 TTACCGTGAAAGTGGTAATAATAAATGGCCCCTAATTCTATTGCACAAGAGACGGGTCAG 1195 Query 1351 TGCGCTTTTAGAAAACCCGAATC-ACCGGAATCTTGTGGAAGAATGGATTAATAACAATG 1409 ||||||||||||||||| || | |||||||||| || ||||||||||||| |||| || Sbjct 1196 GGCGCTTTTAGAAAACCC-AACCCACCGGAATCTGGTTGAAGAATGGATTAGTAACGGTG 1254 Query 1410 TCCTGTATGCGACTCCACCAGGTTCCAATGATGATTGGTATTGGCTCTACGCTGCTGCTA 1469 |||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||| Sbjct 1255 TCCTGTATGCAACTCCACCAGGATCCAATGATGATTGGTATTGGCTATATGCTGCTGCTA 1314 Query 1470 AACTCAAGTGTTTACTTGTGACTAATGATGAGATGAGAGATCACATTTTTGAACTATTAA 1529 | ||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||| Sbjct 1315 AGCTCAAGTGTTTGCTTGTGACAAATGATGAGATGAGGGATCACATTTTTGAACTTTTAG 1374 Query 1530 GTAACAGTTTCTTCCAAAAATGGAAAGAAAGACATCAAGTTCGGTTTACCTTTGTGAAAG 1589 | | |||||| |||||||| ||||||||||| ||||| || |||| ||| |||||||||| Sbjct 1375 GGAGCAGTTTTTTCCAAAAGTGGAAAGAAAGGCATCAGGTCCGGTATACTTTTGTGAAAG 1434 Query 1590 GCTG-TCTCAAGCTTGAAATGCCACCTCCTTTTTCAGTTGTGATCCAGGAATCGGAGAAA 1648 | | ||| |||||||||||||| |||||||||| ||||| || |||||||| |||||| Sbjct 1435 G-TAATCTGAAGCTTGAAATGCCGTCTCCTTTTTCGGTTGTCATTCAGGAATCCGAGAAA 1493 Query 1649 GGATCATGGCACGTTCCAA-TCACGA-GTC-AAGACAAGGAGGAATCTTTAAGAAGTTGG 1705 || |||||||| |||| || | | | | || |||| || || |||| ||||| |||| Sbjct 1494 GGGTCATGGCAT-TTCCCGGTCTC-ATG-CGAAAACAATGAAGAGTCTTCAAGAACTTGG 1550 Query 1706 ATGTGCATTA-CAAGGCAGAGT-TCATAGATTCACTCTA 1742 ||||| |||| || | || ||| | ||||||||| ||| Sbjct 1551 ATGTGTATTAGCA-GACAAAGTGTTTTAGATTCAC-CTA 1587 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73399902115 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5