BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21900.1
Length=1953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889984 jgi|Araly1|889984|Al_scaffold_0007_1970 2399 0.0
Ahg931493 jgi|Araly1|931493|scaffold_303950.1 1519 0.0
> Ahg889984 jgi|Araly1|889984|Al_scaffold_0007_1970
Length=1554
Score = 2399 bits (1299), Expect = 0.0
Identities = 1473/1558 (95%), Gaps = 8/1558 (1%)
Strand=Plus/Plus
Query 179 ATGGCTGGTACTGATAACCGCCGCTCTCGCCACGACGACGAAAGCCC-TAAAAATCCCAA 237
||||| ||||||||| ||||||||||||||||| | ||||||||||| | |||| || ||
Sbjct 1 ATGGCCGGTACTGATCACCGCCGCTCTCGCCACCATGACGAAAGCCCTTCAAAA-CCTAA 59
Query 238 CAAGAAGAAGAAAGGAAACCGTAATCCAGAAAAGAGTCTCCTTATCAATCTTCATTCATG 297
||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 60 CAAGAAGCAGAAGGGAAGCCGCAATCCAGAAAAGAGTCTCCTTATCAATCTTCATTCTTG 119
Query 298 TTCCAAGAGAAAGGATCTCTCAGCTGCATTGGCTCTTTATGATGCAGCTATCACTTCCAG 357
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 TTCCAAGAGAAAGGACCTCTCAGCTGCGTTGGCTCTTTATGATGCAGCTATCACTTCCAG 179
Query 358 TGACATTCGCCTCAACCAGCAACACTTCCAATCCCTTCTTTACCTCTGCTCCGCGTTCAT 417
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 TGACATCCGCCTCAACCAGCAACACTTCCAATCCCTTCTTTATCTCTGCTCCGCGTTCAT 239
Query 418 TAGTGACCCATCTCTTCAAAC-CGTTGCCATTGACCGTGGCTTTCAAATTTTTGACCGTA 476
||||||||||||||||||||| | ||||||||||||| || |||||||||||||||||||
Sbjct 240 TAGTGACCCATCTCTTCAAACAC-TTGCCATTGACCGGGGTTTTCAAATTTTTGACCGTA 298
Query 477 TGGTTAGTTCTGGGATAAGTCCTAATGAATCATCTGTCACTGCAGTTGCACGACTAGCTG 536
|||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 299 TGGTTAGTTCAGGGATAAGTCCCAATGAATCATCCGTCACTGCAGTGGCACGACTAGCTG 358
Query 537 CTGCCAAGGGTGATGGAGACTATGCTTTCAAGCTTGTTAAAGACCTTGTTGCT-GTTGGT 595
||||||||||||| || || ||||||||||||||||| ||||| |||| | | |||||
Sbjct 359 CTGCCAAGGGTGACGGTGATTATGCTTTCAAGCTTGTCAAAGATATTGTCG-TGGTTGGC 417
Query 596 GGTGTATCGGTCCCTCGTCTGAGAACTTATGCTCCGGCTTTGCTCTGTTTCTGTGATACT 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 418 GGTGTATCGGTCCCTCGTCTGAGAACTTATGCTCCGGCTTTGCTCTGTTTCTGTGAGAGT 477
Query 656 TTGGAGGCTGAAAAGGGTTATGAAGTGGAAGATCACATGGATGCTTCAGGTATTGTGTTG 715
||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 478 TTGGAGGCTGAGAAGGGTTATGAAGTGGAAGAGCACATGGATGCTTCAGGTATTATGTTG 537
Query 716 GAGGAGGCAGAGATCTCGGCTTTGCTAAAGGTAAGCGCTGCCACAGGCCGAGAAAACAAG 775
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 538 GAGGAGGCAGAGATCTCTGCTTTGCTGAAGGTAAGCGCTGCCACGGGCCGAGAAAACAAG 597
Query 776 GTTTATAGATATCTGCAGAAGTTAAGAGAATGTGTTGGCTGCGTTAGTGAAGAAACTTCA 835
|||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 598 GTTTATAGATATTTGCATAAATTAAGAGAATGTGTTGGCTGCGTTAGTGAAGAAACTTCA 657
Query 836 AAAGCAATCGAGGAATGGTTTTATGGAGTGAAAGCTAGCGAAGTTAGTGATAATGG-GAT 894
||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 658 AAAACAATCGAGGAATGGTTTTATGGAGTGAAAGCTAGCGAAGTTAGTGATAA-GGCGAT 716
Query 895 TGGTTCTGATATTGAGCTGCTTAGAGCAGCTGTTTTGAAAAATGGGGGTGGGTGGCATGG 954
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 717 TGGTTCTGATATTGAGCTGCTTAGAGCAGCTGTTTTGAAGAATGGGGGTGGGTGGCACGG 776
Query 955 TCTTGGGTGGGTTGGAGAAGGCAAATGGATTGTGAAGAAAGGTAATGTTAGCTCAGCCGG 1014
|||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 777 TCTTGGTTGGGTTGGGGAAGGCAAATGGATTGTGAAGAAAGGTAATGTTAGCCCAGCCGG 836
Query 1015 GAAATGTTTGAGCTGTGATGAGCATTTGGCTTGTGTTGATACCAATGAGGTAGAGACTGA 1074
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AAAATGTTTGAGCTGTGGTGAGCATTTGGCTTGTGTTGATACCAATGAGGTAGAGACTGA 896
Query 1075 AGATTTTGTGAATTCTTTGGTGACTTTGGCTATGGAGAGGAAGGCAAAGATGAATTCATG 1134
| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 897 AAATTTTGTGAATTCTTTGGTGGCTTTGGCTATGGAGAGGAAGGCGAAGATGAATTCATG 956
Query 1135 CGAGCCTATGGCGGATTTCAGTGAGTTTCAGGAGTGGCTTGAAAAGCATGGAGATTACGA 1194
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 957 CGAGCCTATGGCGGATTTCAGCGAGTTTCAGGAGTGGCTTGAAAAGCATGGAGACTACGA 1016
Query 1195 AGCTATACTAGATGGAGCAAATATTGGGCTCTACCAACAAAATTTTGCAGATGGTGGTTT 1254
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||
Sbjct 1017 AGCTATACTAGATGGAGCAAATATTGGGCTTTACCAACAAAATTTTACAGATGGTGGCTT 1076
Query 1255 CAGTCTACCACAGCTTGAAGCTGTAGTGAAGGAACTTTACAATAAAAGTGGTAGCAAAAA 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1077 CAGTCTACCACAGCTTGAAGCTGTAGTGAAGGAACTTTACAATAAAAGTGGTAACAAAAA 1136
Query 1315 ACAGCCGCTAATTCTCTTGCACAAGAAACGGGTCAATGCGCTTTTAGAAAACCCGAATCA 1374
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1137 ACAGCCGCTAATTCTCTTGCACAAGAAACGGGTCAATGCACTTTTAGGAAACCCGAATCA 1196
Query 1375 CCGGAATCTTGTGGAAGAATGGATTAATAACAATGTCCTGTATGCGACTCCACCAGGTTC 1434
||||||||| ||||| ||||||||| ||||||||||||| || ||||| |||||||||||
Sbjct 1197 CCGGAATCTGGTGGAGGAATGGATTGATAACAATGTCCTTTACGCGACCCCACCAGGTTC 1256
Query 1435 CAATGATGATTGGTATTGGCTCTACGCTGCTGCTAAACTCAAGTGTTTACTTGTGACTAA 1494
||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 1257 CAACGATGATTGGTATTGGCTGTATGCTGCTGCTAAACTCAAGTGTTTGCTTGTGACTAA 1316
Query 1495 TGATGAGATGAGAGATCACATTTTTGAACTATTAAGTAACAGTTTCTTCCAAAAATGGAA 1554
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1317 TGATGAGATGAGAGATCACATTTTTGAACTATTAAGTAATAGTTTTTTCCAAAAATGGAA 1376
Query 1555 AGAAAGACATCAAGTTCGGTTTACCTTTGTGAAAGGCTGTCTCAAGCTTGAAATGCCACC 1614
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AGAAAGACATCAAGTGCGGTTTACCTTTGTGAAAGGCTGTCTCAAGCTTGAAATGCCACC 1436
Query 1615 TCCTTTTTCAGTTGTGATCCAGGAATCGGAGAAAGGATCATGGCACGTTCCAATCACGAG 1674
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1437 TCCTTTTTCAGTTGTGATCCAGGAATCAGAGAAAGGATCATGGCACATTCCAATCACGAG 1496
Query 1675 TCAAGACAAGGAGGAATCTTTAAGAAGTTGGATGTGCATTACAAGGCAGAGTTCATAG 1732
||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1497 TCAAGACAATGAGGAATCTTCAAGAAGTTGGATGTGCATTACAAGGCAGAGTTTATAG 1554
> Ahg931493 jgi|Araly1|931493|scaffold_303950.1
Length=1637
Score = 1519 bits (822), Expect = 0.0
Identities = 1351/1599 (84%), Gaps = 65/1599 (4%)
Strand=Plus/Plus
Query 178 CATGGCTGGTACTGAT-AACCGCCGCTCTCGCCACGACGACGAAAGC-CCTAAAAATCCC 235
|||||||| | ||||| || | ||||||||||||| ||||||||||| | | || | |||
Sbjct 20 CATGGCTGCTTCTGATCAA-CACCGCTCTCGCCACCACGACGAAAGCTCTTCAAGA-CCC 77
Query 236 AACAAGAAGAAGAAAGGA-AA-CCGTAA-TCCAGAAA-AGAGTCTCCT-TATCAATCTTC 290
|||||||||||| || || || | | || || |||| | | |||||| | |||| | ||
Sbjct 78 AACAAGAAGAAG-AA-GATAAGCAG-AAGCCCTGAAACA-AATCTCCTCT-TCAA-CCTC 131
Query 291 -ATTCATGTTCCAAGAGAAAGGATCTCTCAGCTGCATTGGCTCTTTATGATGCAGCTATC 349
|||||||||||||| ||||| |||||||||||||| || |||||||||||||| ||
Sbjct 132 AATTCATGTTCCAAGTCCAAGGACCTCTCAGCTGCATTAGCCCTTTATGATGCAGCCGTC 191
Query 350 ACTTCCAGTGACATT-CGCCTCAACCAGCAACACTTCCA-ATCCCTTCTTTACCTCTGCT 407
|||||||| || ||| ||||||| ||||||||| || || | | ||| | ||||| ||||
Sbjct 192 ACTTCCAGCGA-ATTACGCCTCAGCCAGCAACATTTTCAGA-CGCTTGTGTACCTATGCT 249
Query 408 CCGCGTTC-ATTAGTGACCCATCTCTTC-AAACCGTTGCCATTGACCGTGGCTTTC-AAA 464
| || ||| ||||||||| ||||||||| | || |||||||||||||||| |||| | |
Sbjct 250 CTGC-TTCTATTAGTGACACATCTCTTCGGAGCC-TTGCCATTGACCGTGG-TTTCGAGA 306
Query 465 TTTTTGACCGTATGGTTAGTTCTGGGATAAGTCCTAATGAATCATCTGTCACTGCAGTTG 524
||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||| |
Sbjct 307 TTTTTGATCGTATGGTTAGTTCGGGGATAAGTCCTAATGAGGCATCTGTCACTTCAGTGG 366
Query 525 C-ACGACTAGCTGCTGCCAAGGGTGATGGAGACTATGCTTTCAAGCTTGTTAAAGACCTT 583
| | | | |||||||| ||||||||||| || |||||||||||| ||||||| || ||
Sbjct 367 CTA-GGTTGGCTGCTGCTAAGGGTGATGGTGATTATGCTTTCAAGGTTGTTAAGGATTTT 425
Query 584 GTTGCTGTTGGTGGTGTATCG-GTCCCTCGTCTGAGAACTTATGCTCCGGCTTTGCTCTG 642
||| ||||||| ||||| ||| |||| |||||||| || ||||| ||||||||||||||
Sbjct 426 GTTTCTGTTGGCGGTGTGTCGATTCCC-CGTCTGAGGACCTATGCGCCGGCTTTGCTCTG 484
Query 643 TTTCTGTGATACTTTGGAGGCTGAAAAGGGTTATGAAGTGGAAGATCACATGGATGCTTC 702
||||||||| | ||||||||||||||||||||||| |||||||| |||||||| ||| |
Sbjct 485 TTTCTGTGAGAGATTGGAGGCTGAAAAGGGTTATGAGGTGGAAGAGCACATGGAAGCTGC 544
Query 703 AGGTATTGTGTTGGAGGAGGCAGAGATCTCGGCTTTGCTAAAGGTAAGCGCTGCCACAGG 762
||| |||| ||||||||||||||||||| ||||||| | ||||| ||||||||||| ||
Sbjct 545 AGGAATTGAATTGGAGGAGGCAGAGATCTTGGCTTTGTTGAAGGTTAGCGCTGCCACGGG 604
Query 763 CCGAGAAAACAAGGTTTATAGATATCTGCAGAAGTTAAGAGAATGTGTTGGCTGCGTTAG 822
||||||||||||||||||||||||| | || ||||| || |||| ||||||||||||| |
Sbjct 605 CCGAGAAAACAAGGTTTATAGATATTTACATAAGTTGAGGGAATATGTTGGCTGCGTTTG 664
Query 823 TGAAGAAAC-TTCAAAAGCAATCGAGGAATGGTTTTATGGAGTGAAAGCTAGCGAAG-TT 880
||||||||| || |||| ||| || |||||||| | ||||| ||||||| | | || ||
Sbjct 665 TGAAGAAACTTTGAAAA-TAATTGAAGAATGGTTCTGTGGAGAGAAAGCTGGTG-AGCTT 722
Query 881 AGTGATAATGGGATTGGTTCTGATATTGAGCTGCTTAGAGCAGCTGTTTTGAAAAATGGG 940
|||| |||||| |||||||||||| ||| | ||||||||| |||||||||||| |||||
Sbjct 723 AGTGGTAATGGAATTGGTTCTGATGTTGGGATGCTTAGAGAAGCTGTTTTGAAGAATGGA 782
Query 941 GGTGGGTGGCATGGTCTTGGGTGGGTTGGAGAAGGCAAATGGATTGTGAAGAAAGGTAAT 1000
||||||||||| || | |||||||||||| || |||||||||||||| ||||||||||||
Sbjct 783 GGTGGGTGGCACGGGCATGGGTGGGTTGGTGAGGGCAAATGGATTGTTAAGAAAGGTAAT 842
Query 1001 GTTAGCTCAGCCGGGAAATGTTTGAGCTGTGA-TGAGCATTTGGCTTGTGTTGATACCAA 1059
||||||||| |||| |||||||||||||| | |||||| ||||||||||| ||||||||
Sbjct 843 GTTAGCTCAACCGGAAAATGTTTGAGCTG-CAGTGAGCAGTTGGCTTGTGTAGATACCAA 901
Query 1060 TGAGGT--AGAGACTGAAGATTTTGTGAATTCTTTGGTGACTTTGGCTATGGAGAGGAAG 1117
|||||| | | || |||| |||||| ||||||||||| ||||||||||||||||||||
Sbjct 902 TGAGGTGGAAACACAGAAG--TTTGTGGATTCTTTGGTGGCTTTGGCTATGGAGAGGAAG 959
Query 1118 GCAAAGATGAATTCATGCGAG-C-CTATGGCGGAT-TTCAGTGAGTTTCAGGAGTGGCTT 1174
||||||||||||||||||||| | | | || || | ||||| ||||| ||||| ||||||
Sbjct 960 GCAAAGATGAATTCATGCGAGACGC-A-GGTGG-TCTTCAGCGAGTTCCAGGACTGGCTT 1016
Query 1175 GA-AAAGCATGGAGATTACGAAGCTATACTAGATGGAGCAAATATTGGGCTCTACCAACA 1233
|| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1017 GAGAAA-CATGGAGATTACGAAGCTATAGTAGATGGAGCAAATATTGGGCTCTACCAACA 1075
Query 1234 AAATTTTGCAGATGGTGGTTTCAGTCTACCACAGC---TTGAAGCTGTAGTGAAGGAACT 1290
|||||||| |||||| ||||||||||| ||||||| ||||| |||| |||||||||||
Sbjct 1076 AAATTTTGTAGATGGCGGTTTCAGTCTTCCACAGCAGCTTGAATCTGTGGTGAAGGAACT 1135
Query 1291 TTACAATAAAAGTGGTAGCAAAAAACAGCCGCTAATTCTCTTGCACAAGAAACGGGTCAA 1350
|||| | ||||||||| || ||| ||| |||||||| |||||||||| ||||||||
Sbjct 1136 TTACCGTGAAAGTGGTAATAATAAATGGCCCCTAATTCTATTGCACAAGAGACGGGTCAG 1195
Query 1351 TGCGCTTTTAGAAAACCCGAATC-ACCGGAATCTTGTGGAAGAATGGATTAATAACAATG 1409
||||||||||||||||| || | |||||||||| || ||||||||||||| |||| ||
Sbjct 1196 GGCGCTTTTAGAAAACCC-AACCCACCGGAATCTGGTTGAAGAATGGATTAGTAACGGTG 1254
Query 1410 TCCTGTATGCGACTCCACCAGGTTCCAATGATGATTGGTATTGGCTCTACGCTGCTGCTA 1469
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct 1255 TCCTGTATGCAACTCCACCAGGATCCAATGATGATTGGTATTGGCTATATGCTGCTGCTA 1314
Query 1470 AACTCAAGTGTTTACTTGTGACTAATGATGAGATGAGAGATCACATTTTTGAACTATTAA 1529
| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 1315 AGCTCAAGTGTTTGCTTGTGACAAATGATGAGATGAGGGATCACATTTTTGAACTTTTAG 1374
Query 1530 GTAACAGTTTCTTCCAAAAATGGAAAGAAAGACATCAAGTTCGGTTTACCTTTGTGAAAG 1589
| | |||||| |||||||| ||||||||||| ||||| || |||| ||| ||||||||||
Sbjct 1375 GGAGCAGTTTTTTCCAAAAGTGGAAAGAAAGGCATCAGGTCCGGTATACTTTTGTGAAAG 1434
Query 1590 GCTG-TCTCAAGCTTGAAATGCCACCTCCTTTTTCAGTTGTGATCCAGGAATCGGAGAAA 1648
| | ||| |||||||||||||| |||||||||| ||||| || |||||||| ||||||
Sbjct 1435 G-TAATCTGAAGCTTGAAATGCCGTCTCCTTTTTCGGTTGTCATTCAGGAATCCGAGAAA 1493
Query 1649 GGATCATGGCACGTTCCAA-TCACGA-GTC-AAGACAAGGAGGAATCTTTAAGAAGTTGG 1705
|| |||||||| |||| || | | | | || |||| || || |||| ||||| ||||
Sbjct 1494 GGGTCATGGCAT-TTCCCGGTCTC-ATG-CGAAAACAATGAAGAGTCTTCAAGAACTTGG 1550
Query 1706 ATGTGCATTA-CAAGGCAGAGT-TCATAGATTCACTCTA 1742
||||| |||| || | || ||| | ||||||||| |||
Sbjct 1551 ATGTGTATTAGCA-GACAAAGTGTTTTAGATTCAC-CTA 1587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73399902115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5