BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G21902.1

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945974 jgi|Araly1|945974|scaffold_702203.1                        337    4e-92


> Ahg945974 jgi|Araly1|945974|scaffold_702203.1
Length=281

 Score =  337 bits (182),  Expect = 4e-92
 Identities = 219/237 (92%), Gaps = 2/237 (1%)
 Strand=Plus/Plus

Query  1    ATGGCAATGATGAA-GAATCCAAACCAATACACAAAGATAGAGAAAGAAGATCTTAATGA  59
            ||||||||||| || ||||||||| |||||| ||||||| ||||||||||||| ||||||
Sbjct  21   ATGGCAATGAT-AATGAATCCAAAACAATACTCAAAGATTGAGAAAGAAGATCCTAATGA  79

Query  60   GATCATCCATAGGAGAGCTCAGTTTCTGATCCACAAGATTCTCCAACGAGCCGACATAGA  119
            ||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct  80   GATAATCCATAAGAGAGCGCAGTTTCTGATCCACAAGATTCTCCAACGAGCCGACACAGA  139

Query  120  GACATTAAGACAGCAACAGAAGAGAAATACCACGATCAAATTGTTTTCGTTTAGAGTGGT  179
            |||||||||||||| ||||||||||||||||| |||||||  ||| || |||||||||||
Sbjct  140  GACATTAAGACAGCGACAGAAGAGAAATACCATGATCAAAACGTTGTCATTTAGAGTGGT  199

Query  180  TGGGATAAGAATGAAGATAGGGAAGAAGCTGAGGAAGCTAAGGAAGAGTTGTGTAAT  236
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  200  CGGGATAAGAATGAAGATAGGGAAGAAGCTGAGGAAGCTAAGAAAGAGTTGTGTAAT  256



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12591344370


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5