BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21903.2
Length=1765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354582 jgi|Araly1|354582|fgenesh1_pg.C_scaffold_7001755 2134 0.0
Ahg329423 jgi|Araly1|329423|fgenesh1_pm.C_scaffold_7001650 1526 0.0
> Ahg354582 jgi|Araly1|354582|fgenesh1_pg.C_scaffold_7001755
Length=1497
Score = 2134 bits (1155), Expect = 0.0
Identities = 1361/1461 (93%), Gaps = 11/1461 (1%)
Strand=Plus/Plus
Query 60 ATGAATGG-GTCAAATGAGACGGTGGAGAGAAGAATCGAACTCCGACGACCGTTGGTGGA 118
||||| || ||||||||||||||| | ||| |||||||||||||| | ||||||||||||
Sbjct 1 ATGAA-GGTGTCAAATGAGACGGT-G-GAG-AGAATCGAACTCCGGCAACCGTTGGTGGA 56
Query 119 CACGGAGAAGAAACTTCCGTTAGAAGTCGGGCTCGAGAGCGTGTTAACGGAGAGTAGCTT 178
|||||||||||||| || ||| || ||||||||||| ||||||||||| || ||||||||
Sbjct 57 CACGGAGAAGAAACCTCGGTTCGAGGTCGGGCTCGAAAGCGTGTTAACTGATAGTAGCTT 116
Query 179 GCCTTACCGGAGGCGCGTGTACTTAGGCATGTGCATAGAGTTAAAACTACTTCTCCGGTT 238
|||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||
Sbjct 117 GCCTTACCGGAGGCGCGTGTACTTAGGCGTGTGCATAGAGTTGAAACTACTTTTCCGGTT 176
Query 239 AGCACTTCCGGCTATACTTGTCTATTTAATCAACGGTGGAATGGGTATTTCCGCTCGTAT 298
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GGCACTTCCGGCGATACTTGTCTATTTAATCAACGGTGGAATGGGTATTTCCGCTCGTAT 236
Query 299 CTTCGCCGGACATCTAGGCAGT-ACACAACTAGCCGCGGCATCCATCGGAAACAGCAGCT 357
||||||||||||||| |||||| || ||||| ||||| || ||||||||||||||| |||
Sbjct 237 CTTCGCCGGACATCTCGGCAGTAAC-CAACTCGCCGCCGCGTCCATCGGAAACAGCTGCT 295
Query 358 TCAGCCTCGTTTATGCCCTCATGTTGGGCATGGGTAGTGCGGTCGAGACACTATGTGGAC 417
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TCAGTCTCGTTTATGCCCTCATGTTGGGCATGGGTAGTGCGGTCGAGACACTATGTGGAC 355
Query 418 AAGCGTATGGTGCCCACCGGTACGAGATGCTTGGGATCTATCTCCAAAGAGCAACCATTG 477
|||| ||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 356 AAGCCTATGGAGCCCATCGATACGAGATGCTTGGGATCTATCTACAAAGAGCAACCATTG 415
Query 478 TCCTTGCTCTAGTTGGCTTTCCCATGACAATACTATACACTTTTTCGTACCCGATTCTTC 537
|||||||||| |||||||| || ||||||||||||||||| || ||||||||||||||||
Sbjct 416 TCCTTGCTCTTGTTGGCTTACCTATGACAATACTATACACCTTCTCGTACCCGATTCTTC 475
Query 538 TCCTCTTAGGCGAGCCTAAAACGGTATCATACATGGGATCTTTATACATCGCCGGACTCA 597
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TCCTCTTAGGCGAGCCCAAAACGGTATCATACATGGGATCTTTATACATCGCCGGACTCA 535
Query 598 TCCCTCAAATCTTCGCTTACGCCGTCTACTTCACGGCCCAAAAGTTCCTCCAGGCCCAAA 657
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TCCCTCAAATCTTTGCTTACGCCGTCTACTTCACGGCCCAAAAGTTCCTCCAGGCCCAAA 595
Query 658 GCGTAGTGGC-CCCGAGTGCGTACATCTCAGCCGCCGCCCTCGTCCTCCAGATATCGCTG 716
|||| ||||| ||| || |||||||||||||||||||| ||| ||||||||||||||||
Sbjct 596 GCGTGGTGGCTCCC-AGCGCGTACATCTCAGCCGCCGCACTCCTCCTCCAGATATCGCTT 654
Query 717 ACGTGGATCACCGTTTACGCAATGGGCCAAGGCCTCATGGGTATAGCTTATGTTCTTACT 776
|||||||||||||||| | ||||||| |||||||||||||||||||||||||||||
Sbjct 655 TCGTGGATCACCGTTTATGTAATGGGCTTGGGCCTCATGGGTATAGCTTATGTTCTTACG 714
Query 777 ATCTCTTGGTGGTTCATAGTTGGAGCCCAAACGTTTTACGTTATAACTAGCGTAAGGTTT 836
|| ||||||||| |||| |||||||||||||||| |||| ||||| |||||||||||||
Sbjct 715 ATTTCTTGGTGGGTCATTGTTGGAGCCCAAACGTCTTACATTATAGTTAGCGTAAGGTTT 774
Query 837 AAAGACACTTGGACTGGTTTTAGCTGGAAATCGT-TACATGGTCTTTGGAGCTTCTTTAA 895
|| |||||||||||||| ||||||||||||| | | |||||||||||||||||||||||
Sbjct 775 AAGGACACTTGGACTGGAGTTAGCTGGAAATC-TCTCCATGGTCTTTGGAGCTTCTTTAA 833
Query 896 ACTGTCTGCTGGCTCTGCGGTCATGATCTGTTTGGAACTGTGGTATACACAGATTCTGGT 955
||| |||||||||||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct 834 ACTATCTGCTGGCTCTGCTGTAATGATCTGTTTGGAATTGTGGTATACACAGATTCTGGT 893
Query 956 TCTTCTCGCTGGTTTGCTTAAAGATCCTGCACTCTCTCTAGATTCTCTATCTATCTGTAT 1015
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 894 TCTTCTCGCCGGTTTGCTCAAAGATCCTGCACTCTCTCTAGATTCTCTATCTATATGTAT 953
Query 1016 GTCAATTTCAGCATTATCATTCATGGTCTCCGTTGGCTTTAATGCTGCTGTAAGTGTACG 1075
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 954 GTCAATTTCAGCATTATCATTCATGGTCTCCGTCGGCTTTAATGCAGCTGTAAGTGTGCG 1013
Query 1076 TACAAGTAATGAGCTTGGAGCAGGAAATCCGAAATCGGCGTTATTCTCTACATGGACAGC 1135
|||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| ||
Sbjct 1014 TACAAGTAATGAGCTTGGAGCAGGAAATCCGAAATCCGTGTTGTTCTCTACATGGACGGC 1073
Query 1136 GACTTTTGTATCCTTCGTGATCTCCGTCGTAGAGGCACTTGTCGTGATTGCGTCACGTGA 1195
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1074 GACTTTTGTTTCCTTCGTGATCTCCGTCGTGGAGGCACTTGTCGTGATTGCGTCACGTGA 1133
Query 1196 CAACGTCAGCTACATTTTCACGTCGGATGCTGACGTGGCTAAGGCCGTCTCTGACCTATG 1255
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct 1134 TAACGTCAGCTACATTTTCACGTCAGATGCTGACGTGGCTAAAGCCGTCTCTGATCTCTG 1193
Query 1256 TCCTTTTCTCGCCGTCACCATTATTCTTAACGGAATCCAACCTGTCTTGTCCGGAGTGGC 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TCCTTTTCTCGCCGTCACCATTATTCTTAACGGAATCCAACCTGTCTTGTCCGGAGTGGC 1253
Query 1316 AGTGGGATGTGGATGGCAGACATACGTGGCATATGTGAATATTGGTTGTTACTATATAGT 1375
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct 1254 AGTGGGATGTGGATGGCAAACATACGTGGCATATGTGAACGTTGGTTGTTACTATATTGT 1313
Query 1376 TGGTATTCCAATTGGATGTATTCTCGGCTTCACTTTCAATTTTCAAGCAAAGGGGATATG 1435
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1314 TGGTATTCCCATTGGATGTATTCTCGGCTTCACTTTCAATTTTCAAGCCAAGGGAATATG 1373
Query 1436 GACCGGGATGATTGGAGGCACCCTCATGCAAACACTAATCTTACTTTACGTCACGTATCA 1495
|||||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||
Sbjct 1374 GACCGGGATGATTGGAGGTACCCTCATTCAAACACTCATCTTACTTTACGTCACATATCG 1433
Query 1496 AGCAGATTGGGATAAAGAGGT 1516
||| |||||||||||||||||
Sbjct 1434 AGCTGATTGGGATAAAGAGGT 1454
> Ahg329423 jgi|Araly1|329423|fgenesh1_pm.C_scaffold_7001650
Length=1524
Score = 1526 bits (826), Expect = 0.0
Identities = 1219/1409 (87%), Gaps = 26/1409 (2%)
Strand=Plus/Plus
Query 121 CGGAG-AAGAAACTTCCGTTAGAAGTCGGGCTCGAGAGCGTGTTAACGGAGAGT-AGCTT 178
||||| || |||| |||| || ||||| || ||||| || ||||||||| || | |||
Sbjct 68 CGGAGCAA-AAACCTCCGGCGGACGTCGGACTAGAGAGTGTTTTAACGGAGCGTAACCTT 126
Query 179 GCCTTACCGGAGGCGCGTGTACTTAGGCATGTGCATAGAGTTAAAACTACTTCTCCGGTT 238
|| |||||||||||||| |||||||| |||||||||| | ||||||||| |||||||
Sbjct 127 -CCGTACCGGAGGCGCGTATACTTAGGGGCGTGCATAGAGATGAAACTACTTTTCCGGTT 185
Query 239 AGCACTTCCGGCTATACTTGTCTATTTAATCAACGGTGGAATGGGTATTTCCGCTCGTAT 298
||||||||||| ||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 186 GGCACTTCCGGCGATACTTGTCTATTTAGTCAACAGCGGAATGGGTATTTCCGCTCGTAT 245
Query 299 CTTCGCCGGACATCTAGGCAGTACA-CAACTAGCCGCGGCATCCATCGGAAACAGCAGCT 357
||||||||| ||||| || | | | | || ||||| || ||||||| ||||||| |||
Sbjct 246 CTTCGCCGGGCATCTCGGTA-AAAATGAGCTCGCCGCCGCGTCCATCGCAAACAGCTGCT 304
Query 358 TCAGCCTCGTTTATGCCCTCATGTTGGGCATGGGTAGTGCGGTCGAGACACTATGTGGAC 417
|||| ||||| |||| ||||||||| || ||||| ||||| ||||| ||||||||||| |
Sbjct 305 TCAGTCTCGTCTATGGCCTCATGTTAGGTATGGGCAGTGCAGTCGAAACACTATGTGGGC 364
Query 418 AAGCGTATGGTGCCCACCGGTACGAGATGCTTGGGATCTATCTCCAAAGAGCAACCATTG 477
|||| ||||| ||||| || ||||||||||||||||||||||||||||||||||| || |
Sbjct 365 AAGCCTATGGAGCCCATCGTTACGAGATGCTTGGGATCTATCTCCAAAGAGCAACTATAG 424
Query 478 TCCTTGCTCTAGTTGGCTTTCCCATGACAATACTATACACTTTTTCGTACCCGATTCTTC 537
|||| ||||| |||||||| ||||||||| |||||||||| || ||||||||||||||
Sbjct 425 TCCTCGCTCTTGTTGGCTTGCCCATGACATTACTATACACCTTCTCGTACCCGATTCTAA 484
Query 538 TCCT-CTTAGGCGAGCCTAAAACGGTATCATACATGGGATCTTTA-TACATCGCCGGACT 595
|||| | |||| ||||| ||||||||||| ||||||||||| | ||||||||||||||
Sbjct 485 TCCTAC-TAGGGGAGCCCAAAACGGTATCGTACATGGGATC-CAAGTACATCGCCGGACT 542
Query 596 CATCCCTCAAATCTTCGCTTACGCCGTCTACTTCACGGCCCAAAAGTTCCTCCAGGCCCA 655
||| |||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 543 CATTCCTCAAATCTTCGCTTACGCCGTCAACTTCACAGCCCAAAAATTCCTCCAGGCCCA 602
Query 656 AAGCGTAGTGGCCCCGAGTGCGTACATCTCAGCCGCCGCCCTCGTCCTCCAGATATCGCT 715
|||||| |||||||| || |||| ||||||||||||||||||| |||| ||||| | |||
Sbjct 603 AAGCGTGGTGGCCCCTAGCGCGTTCATCTCAGCCGCCGCCCTCATCCTTCAGATCTTGCT 662
Query 716 GACGTGGATCACCGTTTACGCAATGGGCCA-AGGCCTCATGGGTATAGCTTATGTTCTTA 774
|||||||| ||||||||| | ||| || || ||||| ||||| ||||||||||||||||
Sbjct 663 GACGTGGACCACCGTTTATGTAAT-GGACATGGGCCTTATGGGCATAGCTTATGTTCTTA 721
Query 775 CTATCT-CTTGGTGGTTCATAGTTGGAGCCCAAACG-TTTTACGTTATAACTAG-CGTAA 831
|||| | |||||||| |||| |||||| ||| || | |||||| || | ||| | ||
Sbjct 722 CTAT-TACTTGGTGGGTCATTGTTGGATCCC-AATGTTTTTACATTGCAGTTAGTCCCAA 779
Query 832 GGTTTAAAGACACTTGGACTGGTTTTAGCTGGAAATCGTTACATGGTCTTTGGAGCTTCT 891
||| | | |||| ||||||||| ||||||||| |||||| || ||||||||||||||||
Sbjct 780 -GTTCAGACACACGTGGACTGGTCTTAGCTGGAGATCGTTCCAAGGTCTTTGGAGCTTCT 838
Query 892 TTAAACTGTCTGCTGGCTCTGCGGTCATGATCTGTTTGGAACTGTGGTATACACAGATTC 951
||||||| ||||||||||| || || ||||| ||| ||||| |||||||| | |||||||
Sbjct 839 TTAAACTCTCTGCTGGCTCCGCCGTTATGATTTGTCTGGAAATGTGGTATTCGCAGATTC 898
Query 952 TGGTTCTTCTCGCTGGTTTGCTTAAAGATCCTGCACTCTCTCTAGATTCTCTATCTATCT 1011
| |||||||| ||||||||||| ||||||||||| | |||| |||||||||| || ||||
Sbjct 899 TTGTTCTTCTTGCTGGTTTGCTCAAAGATCCTGCTCGCTCTTTAGATTCTCTCTCCATCT 958
Query 1012 GTATGTCAATTTCAGCATTATCATTCATGGTCTCCGTTGGCTTTAATGCTGCTGTAAGTG 1071
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 959 GTATGTCGATTTCAGCATTATCATTCATGGTCTCCGTCGGCTTTAATGCAGCTGTAAGTG 1018
Query 1072 TACGTACAAGTAATGAGCTTGGAGCAGGAAATCCGAAATCGGCGTTATTCTCTACATGGA 1131
|||| ||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1019 TACGAACAAGTAATGAGCTTGGAGCAGGAAATCCGAAATCAGCATTGTTCTCTACATGGA 1078
Query 1132 CAGCGACTTTTGTATCCTTCGTGATCTCCGTCGTA--GAGGCACTTGTCGTGA-TTGCGT 1188
| || |||||||| ||||| ||||| ||||| | | ||||| || | ||||| ||| ||
Sbjct 1079 CGGCAACTTTTGTTTCCTTTGTGATTTCCGT-G-ACGGAGGCCCTCGCCGTGATTTG-GT 1135
Query 1189 CACGTGACAACGTCAGCTACATTTTCACGTCGGATGCTGACGTGGCTAAGGCCGTCTCTG 1248
||||| |||| ||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1136 TTCGTGATTACGTTAGCTACATTTTCACGGAGGATGCTGACGTGGCTAAAGCCGTCTCTG 1195
Query 1249 ACCTATGTCCTTTTCTCGCCGTCACCATTATTCTTAACGGAATCCAACCTGTCTTGTCCG 1308
|||| ||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||||
Sbjct 1196 ACCTCTGTCCTTTTCTAGCCATCACCATCATTCTCAACGGAATCCAACCTGTCTTGTCCG 1255
Query 1309 GAGTGGCAGTGGGATGTGGATGGCAGACATACGTGGCATATGTGAATATTGGTTGTTACT 1368
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1256 GAGTGGCAGTGGGATGTGGATGGCAGACATACGTGGCATATGTGAACGTTGGTTGTTACT 1315
Query 1369 ATATAGTTGGTATTCCAATTGGATGTATTCTCGGCTTCACTTTCAATTTTCAAGCAAAGG 1428
|| | ||||||||||| |||| ||||| ||||||||| ||||| |||||||||| ||||
Sbjct 1316 ATGTTGTTGGTATTCCCGTTGGGTGTATCCTCGGCTTCGCTTTCGATTTTCAAGCCAAGG 1375
Query 1429 GGATATGGACCGGGATGATTGGAGGCACCCTCATGCAAACACTAATCTTACTTTACGTCA 1488
| ||||||||||||||||||||||| ||| ||||||||||||| || |||||||||||||
Sbjct 1376 GAATATGGACCGGGATGATTGGAGGTACCTTCATGCAAACACTCATTTTACTTTACGTCA 1435
Query 1489 CGTATC-AAGCAGATTGGGATAAAGAGGT 1516
|||| | || |||||||||||||||||||
Sbjct 1436 CGTACCGAA-CAGATTGGGATAAAGAGGT 1463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66238936055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5