BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21903.2 Length=1765 Score E Sequences producing significant alignments: (Bits) Value Ahg354582 jgi|Araly1|354582|fgenesh1_pg.C_scaffold_7001755 2134 0.0 Ahg329423 jgi|Araly1|329423|fgenesh1_pm.C_scaffold_7001650 1526 0.0 > Ahg354582 jgi|Araly1|354582|fgenesh1_pg.C_scaffold_7001755 Length=1497 Score = 2134 bits (1155), Expect = 0.0 Identities = 1361/1461 (93%), Gaps = 11/1461 (1%) Strand=Plus/Plus Query 60 ATGAATGG-GTCAAATGAGACGGTGGAGAGAAGAATCGAACTCCGACGACCGTTGGTGGA 118 ||||| || ||||||||||||||| | ||| |||||||||||||| | |||||||||||| Sbjct 1 ATGAA-GGTGTCAAATGAGACGGT-G-GAG-AGAATCGAACTCCGGCAACCGTTGGTGGA 56 Query 119 CACGGAGAAGAAACTTCCGTTAGAAGTCGGGCTCGAGAGCGTGTTAACGGAGAGTAGCTT 178 |||||||||||||| || ||| || ||||||||||| ||||||||||| || |||||||| Sbjct 57 CACGGAGAAGAAACCTCGGTTCGAGGTCGGGCTCGAAAGCGTGTTAACTGATAGTAGCTT 116 Query 179 GCCTTACCGGAGGCGCGTGTACTTAGGCATGTGCATAGAGTTAAAACTACTTCTCCGGTT 238 |||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| Sbjct 117 GCCTTACCGGAGGCGCGTGTACTTAGGCGTGTGCATAGAGTTGAAACTACTTTTCCGGTT 176 Query 239 AGCACTTCCGGCTATACTTGTCTATTTAATCAACGGTGGAATGGGTATTTCCGCTCGTAT 298 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 GGCACTTCCGGCGATACTTGTCTATTTAATCAACGGTGGAATGGGTATTTCCGCTCGTAT 236 Query 299 CTTCGCCGGACATCTAGGCAGT-ACACAACTAGCCGCGGCATCCATCGGAAACAGCAGCT 357 ||||||||||||||| |||||| || ||||| ||||| || ||||||||||||||| ||| Sbjct 237 CTTCGCCGGACATCTCGGCAGTAAC-CAACTCGCCGCCGCGTCCATCGGAAACAGCTGCT 295 Query 358 TCAGCCTCGTTTATGCCCTCATGTTGGGCATGGGTAGTGCGGTCGAGACACTATGTGGAC 417 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 TCAGTCTCGTTTATGCCCTCATGTTGGGCATGGGTAGTGCGGTCGAGACACTATGTGGAC 355 Query 418 AAGCGTATGGTGCCCACCGGTACGAGATGCTTGGGATCTATCTCCAAAGAGCAACCATTG 477 |||| ||||| ||||| || ||||||||||||||||||||||| |||||||||||||||| Sbjct 356 AAGCCTATGGAGCCCATCGATACGAGATGCTTGGGATCTATCTACAAAGAGCAACCATTG 415 Query 478 TCCTTGCTCTAGTTGGCTTTCCCATGACAATACTATACACTTTTTCGTACCCGATTCTTC 537 |||||||||| |||||||| || ||||||||||||||||| || |||||||||||||||| Sbjct 416 TCCTTGCTCTTGTTGGCTTACCTATGACAATACTATACACCTTCTCGTACCCGATTCTTC 475 Query 538 TCCTCTTAGGCGAGCCTAAAACGGTATCATACATGGGATCTTTATACATCGCCGGACTCA 597 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 TCCTCTTAGGCGAGCCCAAAACGGTATCATACATGGGATCTTTATACATCGCCGGACTCA 535 Query 598 TCCCTCAAATCTTCGCTTACGCCGTCTACTTCACGGCCCAAAAGTTCCTCCAGGCCCAAA 657 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 TCCCTCAAATCTTTGCTTACGCCGTCTACTTCACGGCCCAAAAGTTCCTCCAGGCCCAAA 595 Query 658 GCGTAGTGGC-CCCGAGTGCGTACATCTCAGCCGCCGCCCTCGTCCTCCAGATATCGCTG 716 |||| ||||| ||| || |||||||||||||||||||| ||| |||||||||||||||| Sbjct 596 GCGTGGTGGCTCCC-AGCGCGTACATCTCAGCCGCCGCACTCCTCCTCCAGATATCGCTT 654 Query 717 ACGTGGATCACCGTTTACGCAATGGGCCAAGGCCTCATGGGTATAGCTTATGTTCTTACT 776 |||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| Sbjct 655 TCGTGGATCACCGTTTATGTAATGGGCTTGGGCCTCATGGGTATAGCTTATGTTCTTACG 714 Query 777 ATCTCTTGGTGGTTCATAGTTGGAGCCCAAACGTTTTACGTTATAACTAGCGTAAGGTTT 836 || ||||||||| |||| |||||||||||||||| |||| ||||| ||||||||||||| Sbjct 715 ATTTCTTGGTGGGTCATTGTTGGAGCCCAAACGTCTTACATTATAGTTAGCGTAAGGTTT 774 Query 837 AAAGACACTTGGACTGGTTTTAGCTGGAAATCGT-TACATGGTCTTTGGAGCTTCTTTAA 895 || |||||||||||||| ||||||||||||| | | ||||||||||||||||||||||| Sbjct 775 AAGGACACTTGGACTGGAGTTAGCTGGAAATC-TCTCCATGGTCTTTGGAGCTTCTTTAA 833 Query 896 ACTGTCTGCTGGCTCTGCGGTCATGATCTGTTTGGAACTGTGGTATACACAGATTCTGGT 955 ||| |||||||||||||| || ||||||||||||||| |||||||||||||||||||||| Sbjct 834 ACTATCTGCTGGCTCTGCTGTAATGATCTGTTTGGAATTGTGGTATACACAGATTCTGGT 893 Query 956 TCTTCTCGCTGGTTTGCTTAAAGATCCTGCACTCTCTCTAGATTCTCTATCTATCTGTAT 1015 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 894 TCTTCTCGCCGGTTTGCTCAAAGATCCTGCACTCTCTCTAGATTCTCTATCTATATGTAT 953 Query 1016 GTCAATTTCAGCATTATCATTCATGGTCTCCGTTGGCTTTAATGCTGCTGTAAGTGTACG 1075 ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || Sbjct 954 GTCAATTTCAGCATTATCATTCATGGTCTCCGTCGGCTTTAATGCAGCTGTAAGTGTGCG 1013 Query 1076 TACAAGTAATGAGCTTGGAGCAGGAAATCCGAAATCGGCGTTATTCTCTACATGGACAGC 1135 |||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| || Sbjct 1014 TACAAGTAATGAGCTTGGAGCAGGAAATCCGAAATCCGTGTTGTTCTCTACATGGACGGC 1073 Query 1136 GACTTTTGTATCCTTCGTGATCTCCGTCGTAGAGGCACTTGTCGTGATTGCGTCACGTGA 1195 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1074 GACTTTTGTTTCCTTCGTGATCTCCGTCGTGGAGGCACTTGTCGTGATTGCGTCACGTGA 1133 Query 1196 CAACGTCAGCTACATTTTCACGTCGGATGCTGACGTGGCTAAGGCCGTCTCTGACCTATG 1255 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || || Sbjct 1134 TAACGTCAGCTACATTTTCACGTCAGATGCTGACGTGGCTAAAGCCGTCTCTGATCTCTG 1193 Query 1256 TCCTTTTCTCGCCGTCACCATTATTCTTAACGGAATCCAACCTGTCTTGTCCGGAGTGGC 1315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1194 TCCTTTTCTCGCCGTCACCATTATTCTTAACGGAATCCAACCTGTCTTGTCCGGAGTGGC 1253 Query 1316 AGTGGGATGTGGATGGCAGACATACGTGGCATATGTGAATATTGGTTGTTACTATATAGT 1375 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||| || Sbjct 1254 AGTGGGATGTGGATGGCAAACATACGTGGCATATGTGAACGTTGGTTGTTACTATATTGT 1313 Query 1376 TGGTATTCCAATTGGATGTATTCTCGGCTTCACTTTCAATTTTCAAGCAAAGGGGATATG 1435 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 1314 TGGTATTCCCATTGGATGTATTCTCGGCTTCACTTTCAATTTTCAAGCCAAGGGAATATG 1373 Query 1436 GACCGGGATGATTGGAGGCACCCTCATGCAAACACTAATCTTACTTTACGTCACGTATCA 1495 |||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||| Sbjct 1374 GACCGGGATGATTGGAGGTACCCTCATTCAAACACTCATCTTACTTTACGTCACATATCG 1433 Query 1496 AGCAGATTGGGATAAAGAGGT 1516 ||| ||||||||||||||||| Sbjct 1434 AGCTGATTGGGATAAAGAGGT 1454 > Ahg329423 jgi|Araly1|329423|fgenesh1_pm.C_scaffold_7001650 Length=1524 Score = 1526 bits (826), Expect = 0.0 Identities = 1219/1409 (87%), Gaps = 26/1409 (2%) Strand=Plus/Plus Query 121 CGGAG-AAGAAACTTCCGTTAGAAGTCGGGCTCGAGAGCGTGTTAACGGAGAGT-AGCTT 178 ||||| || |||| |||| || ||||| || ||||| || ||||||||| || | ||| Sbjct 68 CGGAGCAA-AAACCTCCGGCGGACGTCGGACTAGAGAGTGTTTTAACGGAGCGTAACCTT 126 Query 179 GCCTTACCGGAGGCGCGTGTACTTAGGCATGTGCATAGAGTTAAAACTACTTCTCCGGTT 238 || |||||||||||||| |||||||| |||||||||| | ||||||||| ||||||| Sbjct 127 -CCGTACCGGAGGCGCGTATACTTAGGGGCGTGCATAGAGATGAAACTACTTTTCCGGTT 185 Query 239 AGCACTTCCGGCTATACTTGTCTATTTAATCAACGGTGGAATGGGTATTTCCGCTCGTAT 298 ||||||||||| ||||||||||||||| ||||| | ||||||||||||||||||||||| Sbjct 186 GGCACTTCCGGCGATACTTGTCTATTTAGTCAACAGCGGAATGGGTATTTCCGCTCGTAT 245 Query 299 CTTCGCCGGACATCTAGGCAGTACA-CAACTAGCCGCGGCATCCATCGGAAACAGCAGCT 357 ||||||||| ||||| || | | | | || ||||| || ||||||| ||||||| ||| Sbjct 246 CTTCGCCGGGCATCTCGGTA-AAAATGAGCTCGCCGCCGCGTCCATCGCAAACAGCTGCT 304 Query 358 TCAGCCTCGTTTATGCCCTCATGTTGGGCATGGGTAGTGCGGTCGAGACACTATGTGGAC 417 |||| ||||| |||| ||||||||| || ||||| ||||| ||||| ||||||||||| | Sbjct 305 TCAGTCTCGTCTATGGCCTCATGTTAGGTATGGGCAGTGCAGTCGAAACACTATGTGGGC 364 Query 418 AAGCGTATGGTGCCCACCGGTACGAGATGCTTGGGATCTATCTCCAAAGAGCAACCATTG 477 |||| ||||| ||||| || ||||||||||||||||||||||||||||||||||| || | Sbjct 365 AAGCCTATGGAGCCCATCGTTACGAGATGCTTGGGATCTATCTCCAAAGAGCAACTATAG 424 Query 478 TCCTTGCTCTAGTTGGCTTTCCCATGACAATACTATACACTTTTTCGTACCCGATTCTTC 537 |||| ||||| |||||||| ||||||||| |||||||||| || |||||||||||||| Sbjct 425 TCCTCGCTCTTGTTGGCTTGCCCATGACATTACTATACACCTTCTCGTACCCGATTCTAA 484 Query 538 TCCT-CTTAGGCGAGCCTAAAACGGTATCATACATGGGATCTTTA-TACATCGCCGGACT 595 |||| | |||| ||||| ||||||||||| ||||||||||| | |||||||||||||| Sbjct 485 TCCTAC-TAGGGGAGCCCAAAACGGTATCGTACATGGGATC-CAAGTACATCGCCGGACT 542 Query 596 CATCCCTCAAATCTTCGCTTACGCCGTCTACTTCACGGCCCAAAAGTTCCTCCAGGCCCA 655 ||| |||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| Sbjct 543 CATTCCTCAAATCTTCGCTTACGCCGTCAACTTCACAGCCCAAAAATTCCTCCAGGCCCA 602 Query 656 AAGCGTAGTGGCCCCGAGTGCGTACATCTCAGCCGCCGCCCTCGTCCTCCAGATATCGCT 715 |||||| |||||||| || |||| ||||||||||||||||||| |||| ||||| | ||| Sbjct 603 AAGCGTGGTGGCCCCTAGCGCGTTCATCTCAGCCGCCGCCCTCATCCTTCAGATCTTGCT 662 Query 716 GACGTGGATCACCGTTTACGCAATGGGCCA-AGGCCTCATGGGTATAGCTTATGTTCTTA 774 |||||||| ||||||||| | ||| || || ||||| ||||| |||||||||||||||| Sbjct 663 GACGTGGACCACCGTTTATGTAAT-GGACATGGGCCTTATGGGCATAGCTTATGTTCTTA 721 Query 775 CTATCT-CTTGGTGGTTCATAGTTGGAGCCCAAACG-TTTTACGTTATAACTAG-CGTAA 831 |||| | |||||||| |||| |||||| ||| || | |||||| || | ||| | || Sbjct 722 CTAT-TACTTGGTGGGTCATTGTTGGATCCC-AATGTTTTTACATTGCAGTTAGTCCCAA 779 Query 832 GGTTTAAAGACACTTGGACTGGTTTTAGCTGGAAATCGTTACATGGTCTTTGGAGCTTCT 891 ||| | | |||| ||||||||| ||||||||| |||||| || |||||||||||||||| Sbjct 780 -GTTCAGACACACGTGGACTGGTCTTAGCTGGAGATCGTTCCAAGGTCTTTGGAGCTTCT 838 Query 892 TTAAACTGTCTGCTGGCTCTGCGGTCATGATCTGTTTGGAACTGTGGTATACACAGATTC 951 ||||||| ||||||||||| || || ||||| ||| ||||| |||||||| | ||||||| Sbjct 839 TTAAACTCTCTGCTGGCTCCGCCGTTATGATTTGTCTGGAAATGTGGTATTCGCAGATTC 898 Query 952 TGGTTCTTCTCGCTGGTTTGCTTAAAGATCCTGCACTCTCTCTAGATTCTCTATCTATCT 1011 | |||||||| ||||||||||| ||||||||||| | |||| |||||||||| || |||| Sbjct 899 TTGTTCTTCTTGCTGGTTTGCTCAAAGATCCTGCTCGCTCTTTAGATTCTCTCTCCATCT 958 Query 1012 GTATGTCAATTTCAGCATTATCATTCATGGTCTCCGTTGGCTTTAATGCTGCTGTAAGTG 1071 ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 959 GTATGTCGATTTCAGCATTATCATTCATGGTCTCCGTCGGCTTTAATGCAGCTGTAAGTG 1018 Query 1072 TACGTACAAGTAATGAGCTTGGAGCAGGAAATCCGAAATCGGCGTTATTCTCTACATGGA 1131 |||| ||||||||||||||||||||||||||||||||||| || || ||||||||||||| Sbjct 1019 TACGAACAAGTAATGAGCTTGGAGCAGGAAATCCGAAATCAGCATTGTTCTCTACATGGA 1078 Query 1132 CAGCGACTTTTGTATCCTTCGTGATCTCCGTCGTA--GAGGCACTTGTCGTGA-TTGCGT 1188 | || |||||||| ||||| ||||| ||||| | | ||||| || | ||||| ||| || Sbjct 1079 CGGCAACTTTTGTTTCCTTTGTGATTTCCGT-G-ACGGAGGCCCTCGCCGTGATTTG-GT 1135 Query 1189 CACGTGACAACGTCAGCTACATTTTCACGTCGGATGCTGACGTGGCTAAGGCCGTCTCTG 1248 ||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 1136 TTCGTGATTACGTTAGCTACATTTTCACGGAGGATGCTGACGTGGCTAAAGCCGTCTCTG 1195 Query 1249 ACCTATGTCCTTTTCTCGCCGTCACCATTATTCTTAACGGAATCCAACCTGTCTTGTCCG 1308 |||| ||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||| Sbjct 1196 ACCTCTGTCCTTTTCTAGCCATCACCATCATTCTCAACGGAATCCAACCTGTCTTGTCCG 1255 Query 1309 GAGTGGCAGTGGGATGTGGATGGCAGACATACGTGGCATATGTGAATATTGGTTGTTACT 1368 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1256 GAGTGGCAGTGGGATGTGGATGGCAGACATACGTGGCATATGTGAACGTTGGTTGTTACT 1315 Query 1369 ATATAGTTGGTATTCCAATTGGATGTATTCTCGGCTTCACTTTCAATTTTCAAGCAAAGG 1428 || | ||||||||||| |||| ||||| ||||||||| ||||| |||||||||| |||| Sbjct 1316 ATGTTGTTGGTATTCCCGTTGGGTGTATCCTCGGCTTCGCTTTCGATTTTCAAGCCAAGG 1375 Query 1429 GGATATGGACCGGGATGATTGGAGGCACCCTCATGCAAACACTAATCTTACTTTACGTCA 1488 | ||||||||||||||||||||||| ||| ||||||||||||| || ||||||||||||| Sbjct 1376 GAATATGGACCGGGATGATTGGAGGTACCTTCATGCAAACACTCATTTTACTTTACGTCA 1435 Query 1489 CGTATC-AAGCAGATTGGGATAAAGAGGT 1516 |||| | || ||||||||||||||||||| Sbjct 1436 CGTACCGAA-CAGATTGGGATAAAGAGGT 1463 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66238936055 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5