BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21910.4
Length=2013
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329423 jgi|Araly1|329423|fgenesh1_pm.C_scaffold_7001650 2320 0.0
Ahg354582 jgi|Araly1|354582|fgenesh1_pg.C_scaffold_7001755 1659 0.0
> Ahg329423 jgi|Araly1|329423|fgenesh1_pm.C_scaffold_7001650
Length=1524
Score = 2320 bits (1256), Expect = 0.0
Identities = 1400/1470 (95%), Gaps = 8/1470 (1%)
Strand=Plus/Plus
Query 165 ATGGAAGTGCCTAGTGAAACCACGAATTTAGCCGATCTCCGGCGACCATTGGTGGTTCCG 224
||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGGGCTTAGTGAAACCACGAATCTAGCCGATCTCCGGCGACCATTGGTGGTTCCA 60
Query 225 GTTGTCTCGGAGCGTAAACCTCCGGCAGACGTCGGACTCGGACTAGAGAGTGTTTTAACG 284
||||||||||||| ||||||||||| | | | | |||||||||||||||||||||||
Sbjct 61 GTTGTCTCGGAGCAAAAACCTCCGGC-G--GAC-G--TCGGACTAGAGAGTGTTTTAACG 114
Query 285 GAGCGTAGCCTTCCGTACCGGAGGCGCGTGTACTTAGGGGCATGCATAGAGATGAAGCTA 344
||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 115 GAGCGTAACCTTCCGTACCGGAGGCGCGTATACTTAGGGGCGTGCATAGAGATGAAACTA 174
Query 345 CTTTTCCGGTTGGCACTTCCGGCGATACTTGTCTATTTAGTCAACAGCGGAATGGGTATT 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CTTTTCCGGTTGGCACTTCCGGCGATACTTGTCTATTTAGTCAACAGCGGAATGGGTATT 234
Query 405 TCCGCTCGGATCTTCGCCGGACATCTCGGTAAAAATGAGCTCGCCGCCGCGTCCATCGGA 464
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 235 TCCGCTCGTATCTTCGCCGGGCATCTCGGTAAAAATGAGCTCGCCGCCGCGTCCATCGCA 294
Query 465 AACAGCTGCTTCAGTCTCGTCTATGGCCTCATGTTAGGTATGGGCAGTGCAGTCGAAACA 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 AACAGCTGCTTCAGTCTCGTCTATGGCCTCATGTTAGGTATGGGCAGTGCAGTCGAAACA 354
Query 525 CTATGTGGACAAGCCTATGGAGCCCATCGTTACGAGATGCTTGGGATCTATCTCCAAAGA 584
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CTATGTGGGCAAGCCTATGGAGCCCATCGTTACGAGATGCTTGGGATCTATCTCCAAAGA 414
Query 585 GCAACAATAGTCCTCGCTCTAGTTGGCTTGCCCATGACATTACTATACACCTTCTCGTAC 644
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 415 GCAACTATAGTCCTCGCTCTTGTTGGCTTGCCCATGACATTACTATACACCTTCTCGTAC 474
Query 645 CCTATTCTAATCCTACTAGGGGAACCCAAAACGGTGTCGTACATGGGATCCAAATACATC 704
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 475 CCGATTCTAATCCTACTAGGGGAGCCCAAAACGGTATCGTACATGGGATCCAAGTACATC 534
Query 705 GCCGGGCTCATCCCTCAAATCTTCGCTTACGCCGTCAACTTCACGGCCCAAAAGTTCCTC 764
||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 535 GCCGGACTCATTCCTCAAATCTTCGCTTACGCCGTCAACTTCACAGCCCAAAAATTCCTC 594
Query 765 CAGGCCCAAAGCGTGGTTGCCCCGAGCGCCTTCATCTCAGCCGCCGCCCTCATCCTCCAG 824
||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 595 CAGGCCCAAAGCGTGGTGGCCCCTAGCGCGTTCATCTCAGCCGCCGCCCTCATCCTTCAG 654
Query 825 ATATTGTTGACGTGGATCACCGTTTATGTAATGGACATGGGCTTTATGGGCATAGCTTAT 884
|| ||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 655 ATCTTGCTGACGTGGACCACCGTTTATGTAATGGACATGGGCCTTATGGGCATAGCTTAT 714
Query 885 GTTCTTACAATTTCTTGGTGGGTCATTGTTGGATCCCAGTGTTTTTACATTGCGGTTAGT 944
|||||||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 715 GTTCTTACTATTACTTGGTGGGTCATTGTTGGATCCCAATGTTTTTACATTGCAGTTAGT 774
Query 945 CCCAAGTTTAGACACACGTGGACTGGTCTTAGCTGGAGATCGCTCCAAGGTCTTTGGAGC 1004
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 775 CCCAAGTTCAGACACACGTGGACTGGTCTTAGCTGGAGATCGTTCCAAGGTCTTTGGAGC 834
Query 1005 TTCTTTAAACTCTCTGCTGGCTCAGCTGTTATGATTTGTCTGGAAATGTGGTATTCGCAG 1064
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 835 TTCTTTAAACTCTCTGCTGGCTCCGCCGTTATGATTTGTCTGGAAATGTGGTATTCGCAG 894
Query 1065 ATTCTTGTTCTTCTTGCTGGTTTGCTCGAAA-ATCCTGCTCGCTCTCTAGATTCTCTTTC 1123
||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| ||
Sbjct 895 ATTCTTGTTCTTCTTGCTGGTTTGCTC-AAAGATCCTGCTCGCTCTTTAGATTCTCTCTC 953
Query 1124 CATCTGTATGTCAATTTCAGCATTATCATTCATGGTCTCTGTCGGCTTTAATGCTGCTGT 1183
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 954 CATCTGTATGTCGATTTCAGCATTATCATTCATGGTCTCCGTCGGCTTTAATGCAGCTGT 1013
Query 1184 AAGTGTACGGACAAGTAATGAGCTTGGAGCAGGAAATCCGAAATCAGCATGGTTCTCTAC 1243
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1014 AAGTGTACGAACAAGTAATGAGCTTGGAGCAGGAAATCCGAAATCAGCATTGTTCTCTAC 1073
Query 1244 ATGGACGGCGACTTTTGTATCCTTCGTGATCTCCGTGACGGAAGCCCTCGCCGTGATTTG 1303
||||||||| |||||||| ||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 1074 ATGGACGGCAACTTTTGTTTCCTTTGTGATTTCCGTGACGGAGGCCCTCGCCGTGATTTG 1133
Query 1304 GTTTCGTGATTACGTTAGCTACATTTTCACGGAGGATGCTGACGTGGCTAAAGCCGTCTC 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GTTTCGTGATTACGTTAGCTACATTTTCACGGAGGATGCTGACGTGGCTAAAGCCGTCTC 1193
Query 1364 TGACCTCTGTCCTTTTCTTGCCATCACCATCATTCTCAACGGAATTCAACCTGTCTTGTC 1423
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1194 TGACCTCTGTCCTTTTCTAGCCATCACCATCATTCTCAACGGAATCCAACCTGTCTTGTC 1253
Query 1424 CGGAGTGGCAGTGGGATGTGGATGGCAAACATACGTGGCATATGTGAATGTTGGTTGTTA 1483
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1254 CGGAGTGGCAGTGGGATGTGGATGGCAGACATACGTGGCATATGTGAACGTTGGTTGTTA 1313
Query 1484 CTACGTTGTTGGTATTCCGGTTGGGTGTATTCTCGGCTTCACTTTCGATTTTCAAGCCAA 1543
||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1314 CTATGTTGTTGGTATTCCCGTTGGGTGTATCCTCGGCTTCGCTTTCGATTTTCAAGCCAA 1373
Query 1544 GGGAATATGGACCGGGATGATTGGAGGTACCCTCATGCAAACACTCATTTTACTTTACGT 1603
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1374 GGGAATATGGACCGGGATGATTGGAGGTACCTTCATGCAAACACTCATTTTACTTTACGT 1433
Query 1604 CACGTACCGAACAGATTGGGATAAAGAGGT 1633
||||||||||||||||||||||||||||||
Sbjct 1434 CACGTACCGAACAGATTGGGATAAAGAGGT 1463
Score = 78.7 bits (42), Expect = 2e-13
Identities = 50/54 (93%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 1661 GCGAGGAAACGTTTGGATCTGTGGGACGACAAGAAGGAGCCTCTCCAAAACTAG 1714
||||| |||||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct 1471 GCGAGAAAACGTTTGGATATGTGGGACGACAAGAAGGAGCCTCTCCACAGCTAG 1524
> Ahg354582 jgi|Araly1|354582|fgenesh1_pg.C_scaffold_7001755
Length=1497
Score = 1659 bits (898), Expect = 0.0
Identities = 1225/1383 (89%), Gaps = 22/1383 (2%)
Strand=Plus/Plus
Query 262 TCGGACTAGAGAGTGTTTTAACGGAGCGTAGCCTT-CCGTACCGGAGGCGCGTGTACTTA 320
|||| || || || || ||||| || |||| ||| || |||||||||||||||||||||
Sbjct 83 TCGGGCTCGAAAGCGTGTTAACTGATAGTAG-CTTGCCTTACCGGAGGCGCGTGTACTTA 141
Query 321 GGGGCATGCATAGAGATGAAGCTACTTTTCCGGTTGGCACTTCCGGCGATACTTGTCTAT 380
|| | ||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 142 GGCGTGTGCATAGAGTTGAAACTACTTTTCCGGTTGGCACTTCCGGCGATACTTGTCTAT 201
Query 381 TTAGTCAACAGCGGAATGGGTATTTCCGCTCGGATCTTCGCCGGACATCTCGGTAAAAAT 440
||| ||||| | |||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 202 TTAATCAACGGTGGAATGGGTATTTCCGCTCGTATCTTCGCCGGACATCTCGGCAGTAAC 261
Query 441 GAGCTCGCCGCCGCGTCCATCGGAAACAGCTGCTTCAGTCTCGTCTATGGCCTCATGTTA 500
| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 262 CAACTCGCCGCCGCGTCCATCGGAAACAGCTGCTTCAGTCTCGTTTATGCCCTCATGTTG 321
Query 501 GGTATGGGCAGTGCAGTCGAAACACTATGTGGACAAGCCTATGGAGCCCATCGTTACGAG 560
|| ||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 322 GGCATGGGTAGTGCGGTCGAGACACTATGTGGACAAGCCTATGGAGCCCATCGATACGAG 381
Query 561 ATGCTTGGGATCTATCTCCAAAGAGCAACAATAGTCCTCGCTCTAGTTGGCTTGCCCATG 620
||||||||||||||||| ||||||||||| || ||||| ||||| |||||||| || |||
Sbjct 382 ATGCTTGGGATCTATCTACAAAGAGCAACCATTGTCCTTGCTCTTGTTGGCTTACCTATG 441
Query 621 ACATTACTATACACCTTCTCGTACCCTATTCTAATCCTAC-TAGGGGAACCCAAAACGGT 679
||| |||||||||||||||||||||| ||||| |||| | |||| || |||||||||||
Sbjct 442 ACAATACTATACACCTTCTCGTACCCGATTCTTCTCCT-CTTAGGCGAGCCCAAAACGGT 500
Query 680 GTCGTACATGGGATCCAAATACATCGCCGGGCTCATCCCTCAAATCTTCGCTTACGCCGT 739
|| ||||||||||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct 501 ATCATACATGGGATCTTTATACATCGCCGGACTCATCCCTCAAATCTTTGCTTACGCCGT 560
Query 740 CAACTTCACGGCCCAAAAGTTCCTCCAGGCCCAAAGCGTGGTTGC-CCCGAGCGCCTTCA 798
| |||||||||||||||||||||||||||||||||||||||| || ||| ||||| | ||
Sbjct 561 CTACTTCACGGCCCAAAAGTTCCTCCAGGCCCAAAGCGTGGTGGCTCCC-AGCGCGTACA 619
Query 799 TCTCAGCCGCCGCCCTCATCCTCCAGATATTG-TTGACGTGGATCACCGTTTATGTAATG 857
||||||||||||| ||| |||||||||||| | || |||||||||||||||||||||||
Sbjct 620 TCTCAGCCGCCGCACTCCTCCTCCAGATATCGCTT-TCGTGGATCACCGTTTATGTAATG 678
Query 858 GACATGGGCTTTATGGGCATAGCTTATGTTCTTACAATTTCTTGGTGGGTCATTGTTGGA 917
| | ||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 679 GGCTTGGGCCTCATGGGTATAGCTTATGTTCTTACGATTTCTTGGTGGGTCATTGTTGGA 738
Query 918 TCCC-AGTGTTTTTACATTGCGGTTAGTCCCAA-GTTT-AGACACACGTGGACTGGTCTT 974
||| | | | ||||||| ||||| | || |||| || |||| |||||||| ||
Sbjct 739 GCCCAAACG-TCTTACATTATAGTTAG-CGTAAGGTTTAAG-GACACTTGGACTGGAGTT 795
Query 975 AGCTGGAGATCGCTCCAAGGTCTTTGGAGCTTCTTTAAACTCTCTGCTGGCTCAGCTGTT 1034
||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 796 AGCTGGAAATCTCTCCATGGTCTTTGGAGCTTCTTTAAACTATCTGCTGGCTCTGCTGTA 855
Query 1035 ATGATTTGTCTGGAAATGTGGTATTCGCAGATTCTTGTTCTTCTTGCTGGTTTGCTCGAA 1094
||||| ||| ||||| |||||||| | |||||||| |||||||| || ||||||||| ||
Sbjct 856 ATGATCTGTTTGGAATTGTGGTATACACAGATTCTGGTTCTTCTCGCCGGTTTGCTC-AA 914
Query 1095 A-ATCCTGCTCGCTCTCTAGATTCTCTTTCCATCTGTATGTCAATTTCAGCATTATCATT 1153
| ||||||| | ||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 915 AGATCCTGCACTCTCTCTAGATTCTCTATCTATATGTATGTCAATTTCAGCATTATCATT 974
Query 1154 CATGGTCTCTGTCGGCTTTAATGCTGCTGTAAGTGTACGGACAAGTAATGAGCTTGGAGC 1213
||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 975 CATGGTCTCCGTCGGCTTTAATGCAGCTGTAAGTGTGCGTACAAGTAATGAGCTTGGAGC 1034
Query 1214 AGGAAATCCGAAATCAGCATGGTTCTCTACATGGACGGCGACTTTTGTATCCTTCGTGAT 1273
||||||||||||||| | | ||||||||||||||||||||||||||| |||||||||||
Sbjct 1035 AGGAAATCCGAAATCCGTGTTGTTCTCTACATGGACGGCGACTTTTGTTTCCTTCGTGAT 1094
Query 1274 CTCCGT-GACGGAAGCCCTCGCCGTGATTTG-GTTTCGTGATTACGTTAGCTACATTTTC 1331
|||||| | ||| || || | ||||| ||| || |||||| |||| ||||||||||||
Sbjct 1095 CTCCGTCG-TGGAGGCACTTGTCGTGA-TTGCGTCACGTGATAACGTCAGCTACATTTTC 1152
Query 1332 ACG-GAGGATGCTGACGTGGCTAAAGCCGTCTCTGACCTCTGTCCTTTTCTTGCCATCAC 1390
||| | ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||
Sbjct 1153 ACGTCA-GATGCTGACGTGGCTAAAGCCGTCTCTGATCTCTGTCCTTTTCTCGCCGTCAC 1211
Query 1391 CATCATTCTCAACGGAATTCAACCTGTCTTGTCCGGAGTGGCAGTGGGATGTGGATGGCA 1450
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 CATTATTCTTAACGGAATCCAACCTGTCTTGTCCGGAGTGGCAGTGGGATGTGGATGGCA 1271
Query 1451 AACATACGTGGCATATGTGAATGTTGGTTGTTACTACGTTGTTGGTATTCCGGTTGGGTG 1510
||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| ||
Sbjct 1272 AACATACGTGGCATATGTGAACGTTGGTTGTTACTATATTGTTGGTATTCCCATTGGATG 1331
Query 1511 TATTCTCGGCTTCACTTTCGATTTTCAAGCCAAGGGAATATGGACCGGGATGATTGGAGG 1570
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 TATTCTCGGCTTCACTTTCAATTTTCAAGCCAAGGGAATATGGACCGGGATGATTGGAGG 1391
Query 1571 TACCCTCATGCAAACACTCATTTTACTTTACGTCACGTACCGAACAGATTGGGATAAAGA 1630
||||||||| ||||||||||| |||||||||||||| || ||| | ||||||||||||||
Sbjct 1392 TACCCTCATTCAAACACTCATCTTACTTTACGTCACATATCGAGCTGATTGGGATAAAGA 1451
Query 1631 GGT 1633
|||
Sbjct 1452 GGT 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75685316815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5