BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21930.1
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492675 jgi|Araly1|492675|fgenesh2_kg.7__2108__AT4G21930.1 826 0.0
> Ahg492675 jgi|Araly1|492675|fgenesh2_kg.7__2108__AT4G21930.1
Length=670
Score = 826 bits (447), Expect = 0.0
Identities = 613/689 (89%), Gaps = 28/689 (4%)
Strand=Plus/Plus
Query 92 TAAATCACAGCGGGTATACAATTTTCTTAGGTAACCAAGAGA--GATATGGGCAAAGGTC 149
||||||| |||||||||||| ||||||||||||| |||||| |||||||||||||||
Sbjct 1 TAAATCAAAGCGGGTATACACTTTTCTTAGGTAAAAAAGAGATTTATATGGGCAAAGGTC 60
Query 150 GGAGCTTACCGATTAGTCGAAGCGAGAGGTTTCTTGGGAGCCATCAGCAGTCCGATGACC 209
|||| |||||||||||||| |||||| | |||||||| ||||||||||| || |
Sbjct 61 GGAGTTTACCGATTAGTCGGAGCGAGCGATTTCTTGGAAGCCATCAGCA-----AT---C 112
Query 210 ATCATGTGGACGGAGAAACTACCTTTGAGCTGGAGCTCATGGAAGAGGATGTCTGGTCGG 269
| |||||||||| ||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 113 --C--GTGGACGGAGTAACCACCGTCGAGCTGGAGCTCATGGAAGAGGATGTCTGGTCGG 168
Query 270 TGGTCGAGCCTGACGAACCAAAGGAACTAGGTGCGTGGAACGCACGCTCTCTCGAGGCCA 329
||||||||||||||||||||| |||| |||| ||||||| | ||||||||||||||| |
Sbjct 169 TGGTCGAGCCTGACGAACCAACGGAAGTAGGCGCGTGGATCACACGCTCTCTCGAGGGGA 228
Query 330 GTGGCAGTGAATGGAGACGGAAGGGAGGACGCGTGAGTGACCTGACCGTTC-CGAGTGAT 388
|| || ||||||||||||||| ||||| ||||||||||||||||||| || |||||||
Sbjct 229 CTGACAATGAATGGAGACGGAACGGAGGCCGCGTGAGTGACCTGACCG-TCTCGAGTGAA 287
Query 389 GGACAGAGGAAGAGACACGTGGCGACTTCTGCGCCGGTGAAAGTTCCTGACTGGAGCAAG 448
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 GGGCGGAGGAAGAGACACGTGGCGACTTCTGCGCCGGTGAAAGTTCCTGACTGGAGCAAG 347
Query 449 ATCCTAAAGGTGGAGTCCGTCAAGTCAATGCATAATAATAATAACGATAATGATAATGCT 508
|||||||||||||||||| ||||||||||||||||||||||||| ||| ||| |||
Sbjct 348 ATCCTAAAGGTGGAGTCCATCAAGTCAATGCATAATAATAATAATGAT---GAT---GCT 401
Query 509 GACGTGGCGGATTGTGATTGGGAGAGTGCGATGGTACCGCCTCATGAATACGTGGCCGCG 568
|||| ||||| || | |||||| ||||| ||| || ||||||||||||||||||||||||
Sbjct 402 GACGCGGCGGTTTTTAATTGGGGGAGTGAGATAGTGCCGCCTCATGAATACGTGGCCGCG 461
Query 569 CGTAGCCGTAACGGTGACGGTGGTTCGTCCGTGTTTTTGGGCGTGGGAAGAACGTTAAAA 628
||||||||||||||||||||| ||||||| ||||||||||||||||| || ||||||||
Sbjct 462 CGTAGCCGTAACGGTGACGGTAGTTCGTCGGTGTTTTTGGGCGTGGGGAGGACGTTAAAG 521
Query 629 GGACGTGACATGAGACGGGTCAGAGACGCCGTGTGGAGCCAAACCGGGTTTTATGGTTAA 688
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 522 GGACGTGACATGAGACGGGTCAGAGACGCCGTGTGGAGACAAACCGGGTTTTATGGTTAA 581
Query 689 TTTTACGTAATTAATTTGATCATTAATATTTGATT---GTAGTA-TATG-A-TTTGTCCA 742
|||||||||||||||||||||||||||||| |||| |||||| ||| | ||||||||
Sbjct 582 TTTTACGTAATTAATTTGATCATTAATATTAGATTATAGTAGTAGTATATAATTTGTCCA 641
Query 743 TAGAGTTGAAGTAATTAATTAAGCACTAT 771
|||||||| ||||||||||||||||||||
Sbjct 642 TAGAGTTGGAGTAATTAATTAAGCACTAT 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30574579434
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5