BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21960.1
Length=1582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492673 jgi|Araly1|492673|fgenesh2_kg.7__2106__AT4G21960.1 2359 0.0
> Ahg492673 jgi|Araly1|492673|fgenesh2_kg.7__2106__AT4G21960.1
Length=1530
Score = 2359 bits (1277), Expect = 0.0
Identities = 1457/1540 (95%), Gaps = 27/1540 (2%)
Strand=Plus/Plus
Query 41 AAAA-ATAAATAAAGAAAACTCCATTTCCCTTTATTTAAGGAGGCTGCATTGCTTGCTCA 99
|||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3 AAAATAAAAATAAAGAAAACTCCATTTTCCTTTATTTAAGGAGGCTGCATTGCTTGCTCA 62
Query 100 CTGACTCAACTCAAGAGTGGTGTAGTGAGAGAAGAAAGATAGAGaaaaaaaaTGGGAGGC 159
|||||||||||||||| ||| | ||| |||||||| | | ||||||||||||||||
Sbjct 63 CTGACTCAACTCAAGA---GTG-A---AGA-AAGAAAGAGACAAAAAAAAAATGGGAGGC 114
Query 160 AAAGGTGTGATGATGGTGGCGATACTTTGCCTTTGGGCACTCTCTGCAACATCTGAAGCA 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 AAAGGTGTGATGATGGTGGCGATACTTTGCCTTTGGGCACTCTCTGCAACATCTGAAGCA 174
Query 220 GTAACAGAGGCTGAGCCAGGTTTGATGATGAACTTCTACAAGGACACGTGTCCTCAGGCC 279
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GTAACAGAGGCGGAGCCAGGTTTGATGATGAACTTCTACAAGGACACGTGTCCTCAGGCT 234
Query 280 GAAGACATCGTCCGTGAACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCGCTTTC 339
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GAAGATATCATCCGTGAACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCGCTTTC 294
Query 340 TCTTGGCTCCGTAACATCTTCCATGACTGCGCCGTTGAGTCATGTGATGCGTCGCTTTTG 399
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 295 TCTTGGCTCCGTAACATCTTCCACGACTGCGCCGTCGAGTCGTGTGATGCGTCGCTTTTG 354
Query 400 CTGGATTCGACAAGAAGAGAGCTAGGAGAGAAAGAACACGACAGGAGCTTCGGACTTAGA 459
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 355 CTGGATTCGACAAGAAGAGAGCTAGGAGAGAAAGAACATGACAGGAGCTTCGGACTGAGA 414
Query 460 AACTTTAGGTACATCGAGGAGATCAAGGAAGCTCTCGAGAGGGAGTGTCCTGGTGTTGTC 519
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 415 AACTTCAGGTACATCGAGGAGATCAAGGAAGCTCTTGAGAGGGAGTGTCCTGGTGTTGTC 474
Query 520 TCATGTTCTGACATTCTCGTCTTGTCCGCAAGAGAAGGCATCGAAGCAGTAGGAGGACCT 579
|||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 475 TCATGTTCCGACATTCTCGTCTTGTCGGCAAGAGAAGGAATCGAAGCAGTGGGAGGACCA 534
Query 580 TATATTCCTTTGAAGACAGGAAGGAGAGATGGACTTAAAAGCAGGACGGATATGCTCGAG 639
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 535 TATATTCCTTTGAAGACAGGAAGGAGAGATGGACTTAAAAGCAGGACCGATATGCTTGAG 594
Query 640 TCATATCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGAAAAGTTCAAATCCATC 699
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 595 TCATATCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGACAAGTTCAAATCCATC 654
Query 700 GGTATCGACACTCCCGGCCTCGTCGCCCTCCTAGGGTCACACAGCGTGGGAAGAACTCAC 759
|| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 655 GGAATCGACACTCCCGGCCTCGTTGCTCTCCTAGGGTCACACAGCGTGGGAAGAACTCAT 714
Query 760 TGTGTCAAGCTGGTCCATCGTTTGTACCCTGAGGTGGACCCGTCCTTAAACCCGGACCAC 819
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 715 TGTGTCAAGCTGGTCCATCGTTTGTACCCTGAGGTGGATCCGTCCTTGAACCCGGACCAC 774
Query 820 GTCCCTCACATGCTACACAAGTGTCCTGACTCGATCCCTGACCCAAAGGCGGTCCAGTAC 879
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 775 GTCCCTCACATGCTACACAAGTGTCCTGACTCTATCCCTGACCCAAAGGCGGTCCAGTAC 834
Query 880 GTGCGTAACGACCGTGGCACCCCCATGGTGCTAGACAACAATTACTACCGTAACATCCTA 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GTGCGTAACGACCGTGGCACCCCCATGGTGCTAGACAACAATTACTACCGTAACATCCTA 894
Query 940 GACAACAAGGGTTTGCTCCTTGTGGACCATCAGCTCGCACACGACAAACGAACCAGACCA 999
||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 895 GACAACAAGGGTTTGCTTCTTGTGGACCATCAGCTCGCACACGACAAAAGAACTAGACCA 954
Query 1000 ATCGTTAAGAAGATGGCTAAGGACCAGGCCTACTTCTTCAAGGAGTTCACTAGGGCAATC 1059
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 ATTGTTAAGAAGATGGCTAAGGACCAGGCCTACTTCTTCAAGGAGTTCACTAGGGCAATC 1014
Query 1060 CAGATCTTATCCGAGAACAACCCCTTGACTGGCTCTAAGGGTGAGATCAGGAAGCAATGT 1119
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1015 CAGATCTTATCCGAGAACAACCCTTTGACTGGCTCTAAGGGTGAGATCAGGAAGCAATGC 1074
Query 1120 AATCTCGCAAACAAGAACCATTGAAGTTGGAAAAAGTGAGAAAGACAGGGGCTCTGGTGT 1179
||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1075 AATCTTGCAAACAAGAACCATTGAAGTTGGAAAAAGTGAGAAAGGCAGAGGCTCTGGTGT 1134
Query 1180 GTTGAGTTCTCTGCTTGGTACGAACCAAGATGAATaaaaaaa-TCTTTTAAGTTAAATCA 1238
|||| | |||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1135 GTTGGGATCTCTGCTTGGTACGAACTAAGATGAATAAAAAAAATCTTTTAAGTTAAATCA 1194
Query 1239 AAGAAAGGGTGATGATGAATACATCATGGTAGTGACCACCTCCTTCTTTTGTGTGTTC-- 1296
|||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||
Sbjct 1195 AAGAAAGGGTGATGATGAATGCATCATGGTGGTGACCACATCCTTCTTTTGTGTGTTCTT 1254
Query 1297 -----AGCCTTAATGCTTTAATTATGATGTT-AGTGGCTTTGAGTTATTTAATCTAAATG 1350
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1255 GTTGCAGCCTTAATGCTTTAATTATGATGTTTAGTGGCTTTGAGTTATTTAATCTAAATG 1314
Query 1351 TTGGCTCTTCGTTGATTTTGGGTTTGTGGTGGGGGTGATATAATGATAATGGAAAGGATG 1410
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1315 TTGGCTCTTCGTTGATTTTGGGTTTGTGGTGGGGATGAGATAATGATAATGGAAAGGATG 1374
Query 1411 TATGATATGATGGATGGTGTT-GGGTATCAT-GTATGACGATGTAATGATAAGTAAACAT 1468
||||||||||||||||||||| ||||| || ||||||||||||||| |||||||||||
Sbjct 1375 TATGATATGATGGATGGTGTTTGGGTA--ATTGTATGACGATGTAATAATAAGTAAACA- 1431
Query 1469 GTCCGAATCTTTTG-ATAATTTGTTCAACATGCATGGTATACATA-A-GTACTGTGTATG 1525
||| ||||||||| |||| |||||||||||||||| |||| ||| | ||||||||| ||
Sbjct 1432 GTCGGAATCTTTTCTATAACTTGTTCAACATGCATGATATATATATAAGTACTGTGTTTG 1491
Query 1526 GGTGATATCGATCTATTTTACTGATCTCACCAAAGATTTT 1565
| |||||||||||||||||||||||||||| |||||||||
Sbjct 1492 G-TGATATCGATCTATTTTACTGATCTCACTAAAGATTTT 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59268421220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5