BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21970.1
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492672 jgi|Araly1|492672|fgenesh2_kg.7__2105__AT4G21970.1 983 0.0
> Ahg492672 jgi|Araly1|492672|fgenesh2_kg.7__2105__AT4G21970.1
Length=666
Score = 983 bits (532), Expect = 0.0
Identities = 623/667 (93%), Gaps = 5/667 (1%)
Strand=Plus/Plus
Query 1 TCTGTCTCTCATTTGCCAGCAAAGAGAGATTGTTTAATGTTGTTTATGGTTCACATTTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTGTCTCTCATTTGCCAGCAAAGAGAGATTGTTTAATGTTGTTTATGGTTCACATTTTT 60
Query 61 ATACAATATCACATTTTCACTGAATCTTCCTCTGCGTCTCTCAGGAGGAAGAAGATCATT 120
|||||||||||||||||||||||||||||||||||||||||||| | | || | |
Sbjct 61 ATACAATATCACATTTTCACTGAATCTTCCTCTGCGTCTCTCAGAATCACTTAGTTGAAG 120
Query 121 CAGTTGAAGCACACATTTAAAGGGTTTTGTTGAGAGGCAATGGAAGGGGGAGAAGAGTTT 180
||| |||||| | ||| |||||||||||||||| | |||||||||||||||||||||||
Sbjct 121 CAGAAGAAGCATATATTGAAAGGGTTTTGTTGAGTGACAATGGAAGGGGGAGAAGAGTTT 180
Query 181 CAAGAAGAAGAAGTGTGGTCAGTTTTGAGAGAAAGTGAAACTCAAGGTCCTGAAATGAAA 240
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 181 CAAGAAGAAGAAGTGTGGTCAGTTTTAAGAGAAAGTGAAACTCCAGGTCCTGAAATGAAA 240
Query 241 ATGTCCAAAAGTAACAATCTCTTCTCAGCCTCTTCCTCATCTTCTGCGA-GGTACATTCC 299
||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||
Sbjct 241 ATGTCCAAAAGTAACAATCTCTTCTCAGCCTCTTCTTCATCTTCTGC-ACGGTACATTCC 299
Query 300 TAAAGGCAACGAGGTCTCTGGAGGGGCAAAACAGTCATCTGCTCCAATGAATATTCCTGA 359
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 300 TAAGGGCAACGAGGTCTCTGGAGGGGTAAAACAGTCATCTGCTCCAATGAATATTCCTGA 359
Query 360 CTGGTCCAAGGTTTATGGGTATTCAAAGAAGAACACAAGCAGCCACTTGCATTCATGGGC 419
|||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||
Sbjct 360 CTGGTCCAAGGTTTATGGGTTTTCAAAGAAGAACACAAGGAGCCACTTGCATTTGTGGGC 419
Query 420 CA-T--TGACGATGATGATGAAGGCTCAATGGTTCCTCCACATGAGTTAGTAGCAAAAAG 476
|| | ||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 420 CATTGATGATGATGATGATGAAGGCTCAATGGTTCCTCCACATGAATTGGTAGCAAAAAG 479
Query 477 ACTTGCAAGAACGCAGATCTCATCATTCTCTATGTGCGAAGGAATCGGAAGAACGCTCAA 536
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 480 GCTTGCAAGAACGCAGATCTCATCGTTCTCTATGTGTGAAGGAATCGGAAGAACACTCAA 539
Query 537 AGGAAGAGATCTCAGCAAAACAAGAAACGCTGTCTTAACAAGAACTGGTTTCTTGGAATC 596
||||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||
Sbjct 540 AGGAAGAGATCTCAGCAAAACAAGAAATGCTATCTTGAGAAGAACTGGTTTCTTGGAATC 599
Query 597 GAATATCACATCTTCATCAACAACATCACCACCATAGTTTTGGCATGGCATGGAGCATGG 656
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 GAATATCACATCTTCATCAACAACATCACCACCATAGTTATGGCATGGCATGGAGCATGG 659
Query 657 CTGGATG 663
||||||
Sbjct 660 GTGGATG 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24322421046
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5