BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21980.2
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889976 jgi|Araly1|889976|Al_scaffold_0007_1962 688 0.0
Ahg943233 jgi|Araly1|943233|scaffold_603777.1 427 6e-119
> Ahg889976 jgi|Araly1|889976|Al_scaffold_0007_1962
Length=414
Score = 688 bits (372), Expect = 0.0
Identities = 401/415 (97%), Gaps = 2/415 (0%)
Strand=Plus/Plus
Query 256 ATGATCTTTGCTTGCTTGAAATTCGCAGAGACTAATCGAATCGCAATGGCTAAGAGTTCC 315
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGATATTTGCTTGCTTGAAATTTGCAGAGACTAATCGAATCGCCATGGCTAAGAGTTCC 60
Query 316 TTCAAGATCTCTAACCCTCTCGAGGCAAGGATGAGTGAATCTTCTCGAATCAGAGAGAAG 375
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TTCAAGATCTCTAACCCTCTCGAGGCAAGAATGAGTGAATCTTCTCGAATCAGAGAGAAG 120
Query 376 TACCCTGACAGAATTCCCGTGATTGTGGAGAAGGCTGGACAAAGTGATGTTCCTGACATT 435
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 TACCCTGACAGAATTCCCGTGATTGTGGAAAAGGCTGGACAAAGTGATGTTCCTGACATT 180
Query 436 GACAAGAAGAAGTATCTTGTACCAGCTGATCTAACAGTGGGACAATTTGTATACGTGGTT 495
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 181 GACAAGAAGAAGTATCTTGTACCAGCAGATCTAACAGTTGGACAATTTGTATATGTGGTT 240
Query 496 CGTAAAAGAATCAAGCTTGGAGCTGAGAAAGCTATTTTTGTCTTTGTTAAGAACACATTG 555
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 CGCAAAAGAATCAAGCTTGGAGCTGAGAAAGCTATCTTTGTCTTTGTTAAGAACACATTG 300
Query 556 CCTCCAACTGCTGCATTGATGTCTGCGATCTATGAAGAACACAAAGATGAGGATGGGTTC 615
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 301 CCTCCAACTGCTGCATTGATGTCTGCAATCTATGAAGAACACAAAGATGAAGATGGGTTC 360
Query 616 CTCTACATGACTTACAGTGGAGAGAACACTTTTGGATCTCTT-ACCGTTGCTTGA 669
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 361 CTCTACATGACTTACAGTGGAGAGAACACTTTTGGAT-TCTTTACCGTTGCTTGA 414
> Ahg943233 jgi|Araly1|943233|scaffold_603777.1
Length=406
Score = 427 bits (231), Expect = 6e-119
Identities = 328/376 (87%), Gaps = 2/376 (1%)
Strand=Plus/Plus
Query 280 GCAGAGACTAATCGAATCGCAATGGCTAAGAGTTCCTTCAAGATCTCTAACCCTCTCGAG 339
||||| |||||||| ||||| |||||||||| ||||||||| | ||||| ||||| |||
Sbjct 1 GCAGATACTAATCGGATCGCCATGGCTAAGAACTCCTTCAAGCTTTCTAATCCTCTGGAG 60
Query 340 GCAAGGATGAG-TGAATCTTCTCGAATCAGAGAGAAGTACCCTGACAGAATTCCCGTGAT 398
|| ||| | ||||||| |||| ||||||| ||| ||||| |||||| ||||||||||
Sbjct 61 ATGAGAATG-GCTGAATCTACTCGTATCAGAGCGAAATACCCAGACAGAGTTCCCGTGAT 119
Query 399 TGTGGAGAAGGCTGGACAAAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACC 458
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGTGGAGAAGGCTGGACAGAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACC 179
Query 459 AGCTGATCTAACAGTGGGACAATTTGTATACGTGGTTCGTAAAAGAATCAAGCTTGGAGC 518
|||||||||||| || || || ||||| ||||| || | |||||||||||||| |||||
Sbjct 180 AGCTGATCTAACTGTTGGCCAGTTTGTGTACGTTGTGAGAAAAAGAATCAAGCTGGGAGC 239
Query 519 TGAGAAAGCTATTTTTGTCTTTGTTAAGAACACATTGCCTCCAACTGCTGCATTGATGTC 578
|| ||||| || ||||||||||| ||||||||||| || |||||||||||| |||||||
Sbjct 240 CGAAAAAGCCATCTTTGTCTTTGTCAAGAACACATTACCCCCAACTGCTGCACTGATGTC 299
Query 579 TGCGATCTATGAAGAACACAAAGATGAGGATGGGTTCCTCTACATGACTTACAGTGGAGA 638
||| || ||||| ||||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct 300 TGCAATATATGAGGAACACAAAGACGAAGATGGGTTTCTCTACATGACATACAGTGGAGA 359
Query 639 GAACACTTTTGGATCT 654
|||||| |||||||||
Sbjct 360 GAACACATTTGGATCT 375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33128814873
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5