BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22010.1
Length=1983
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945946 jgi|Araly1|945946|scaffold_702175.1 2756 0.0
> Ahg945946 jgi|Araly1|945946|scaffold_702175.1
Length=1666
Score = 2756 bits (1492), Expect = 0.0
Identities = 1598/1651 (97%), Gaps = 0/1651 (0%)
Strand=Plus/Plus
Query 101 AAAAAATGAGAGGTTCTTGCAAAGTCTCTATAGTTCTTCTTCTGGTTTTAATCAATGGTG 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 AAAAAATGAGAGGTTCTTGCAAAGTCTCTATAGTTCTTCTTCTGGTTTTAATCAATGGTG 75
Query 161 TGCTTGGAGATAACCCTTATAGATTCTTCACCTGGAAAATTACTTATGGCGACATTTATC 220
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 76 TGCTTGGAGATAACCCTTATAGATTCTTTACCTGGAAAATAACTTATGGTGACATTTATC 135
Query 221 CCCTTGGTGTTAAACAACAGGGAATATTGATAAATGGGCAGTTTCCTGGACCTCACATTG 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 CCCTTGGTGTTAAACAACAGGGAATATTGATAAATGGGCAGTTTCCTGGACCTCACATTG 195
Query 281 ACGCAATCACAAATGATAATATCATTATCAGTGTTTTCAATTACTTGAAAGAGCCTTTTC 340
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 196 ACGCAATCACAAATGATAATATCATTATTAGTGTTTTCAATTACTTGAAAGAGCCTTTCC 255
Query 341 TCATTTCTTGGAACGGAGTGCAACAGAGGAAGAACTCATGGCAAGATGGAGTCGTAGGGA 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 TCATTTCTTGGAACGGAGTGCAACAGAGGAAGAACTCATGGCAAGATGGAGTCGTAGGGA 315
Query 401 CAACATGTCCGATTCCACCAGGCAAAAACTTCACTTATGTAATTCAAGTCAAAGATCAAA 460
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 316 CAACATGTCCAATTCCACCTGGCAAAAACTTCACTTATGTAATCCAAGTCAAAGATCAAA 375
Query 461 TTGGTAGCTTCTACTATTTCCCTTCTCTTGCCTTCCACAAAGCCGCTGGTGCATTTGGAG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 TTGGTAGCTTCTACTATTTCCCTTCTCTTGCCTTCCACAAAGCCGCTGGTGCATTTGGAG 435
Query 521 CCATCCGTGTCTGGAGTCGTCCTCGCATCCCTGTCCCGTTCTCTCCCCCTGACGGTGATT 580
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 436 CCATCCGTGTTTGGAGTCGTCCTCGCATCCCCGTCCCGTTCTCTCCCCCTGACGGTGACT 495
Query 581 TCTGGCTTCTCGCCGGAGATTGGTACAAAACCAATCACTATGTTTTGAGACGTCTACTAG 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TCTGGCTTCTCGCCGGAGATTGGTACAAAACCAATCACTATGTTTTGAGACGTCTACTAG 555
Query 641 AAGCCGGAAGGAATCTACCGAATCCTGATGGAGTTCTCATCAATGGTCGCGGCTGGGGAG 700
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 556 AAGCCGGAAGGAATCTACCGAATCCTGATGGAGTTCTCATCAATGGTCGAGGCTGGGGAG 615
Query 701 GCAATACCTTCACCGTTCAACCCGGTAAGACCTATAGATTCAGAATATCAAACGTTGGGG 760
|||||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||
Sbjct 616 GCAATACCTTCACCGTTCAACCTGGTAAGACATATAGATTTAGAATATCAAACGTCGGGG 675
Query 761 TCGCGACTTCATTAAACTTCAGAATCCAAGGACACACGATGAAGCTCGTTGAAGTAGAAG 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TCGCGACTTCATTAAACTTCAGAATCCAAGGACACACGATGAAGCTCGTTGAAGTAGAAG 735
Query 821 GCTCTCACACTGTTCAAAACATCTACACTTCACTTGACATTCATTTAGGACAGTCTTACT 880
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GGTCTCACACTGTTCAAAACATCTACACTTCACTTGACATTCATTTAGGACAGTCTTACT 795
Query 881 CTGTTCTTGTGACGGCTAACCAAGCTCCTCAAGACTATTACATCGTCATCTCCTCGAGGT 940
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 796 CTGTTCTCGTGACGGCTAACCAAGCGCCTCAAGACTATTACATCGTCATCTCCTCGAGGT 855
Query 941 TCACGCGGAAAGTCCTTACAACGACTTCGATTCTCCATTACAGTAACTCGAGAAAAGGCG 1000
||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 856 TCACGCGAAAAGTCCTCACAACGACTTCGATTCTCCATTACAGTAACTCGAGAAGAGGCG 915
Query 1001 TATCTGGCCCTGTTCCAAATGGTCCTACTTTGGACATCGCATCTTCACTCTACCAAGCTC 1060
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 916 TCTCTGGCCCTGTTCCAAATGGTCCCACTTTGGACATCGCATCTTCGCTCTACCAAGCTC 975
Query 1061 GAACTATCCGGAGAAATCTTACAGCGAGTGGTCCGAGACCGAATCCGCAAGGCTCGTATC 1120
||||||| ||||| |||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 976 GAACTATACGGAGGAATCTTACCGCGAGTGGTCCGAGACCAAACCCGCAAGGCTCGTATC 1035
Query 1121 ATTACGGTTTGATCAAACCAGGCCGTACGATCATACTCGCCAACTCAGCTCCTTGGATCA 1180
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1036 ATTACGGTTTGATTAAACCAGGCCGTACGATCATACTGGCCAACTCGGCTCCTTGGATCA 1095
Query 1181 ACGGCAAGCAAAGGTACGCCGTGAACGGTGCCTCGTTTGTTGCGCCTGACACACCATTGA 1240
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 ACGGCAAGCAACGGTTCGCCGTGAACGGTGCCTCGTTTGTTGCGCCTGACACACCATTGA 1155
Query 1241 AGCTCGCCGATTACTTCAAGATTCCCGGAGTTTTTAACCTCGGAAGCATCCCAACGAGTC 1300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1156 AGCTCGCCGATTACTTCAAGATTCCCGGAGTTTTTAACCTTGGAAGCATCCCAACGAGTC 1215
Query 1301 CCTCTGGTGGAAACGGAGGGTATCTTCAAAGCTCTGTTATGGCCGCTAACTTTAGAGAAT 1360
| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1216 CTTCTGGTGGAAACGGAGGGTACCTTCAAAGCTCTGTTATGGCCGCTAACTTCAGAGAAT 1275
Query 1361 TCATCGAGGTTGTTTTCCAAAACTGGGAAAATTCAGTCCAGTCTTGGCACGTCTCCGGTT 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 TCATCGAGGTTGTTTTCCAAAACTGGGAAAATTCAGTCCAGTCTTGGCACGTCTCCGGTT 1335
Query 1421 ACTCTTTCTTCGTCGTCGGTATGGATGGAGGACAATGGACTCCCGGAAGCCGAGCAAAGT 1480
||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||
Sbjct 1336 ACTCTTTCTTCGTCGTCGGAATGGATGGAGGACAATGGACACCCGGAAGCCGATCAAAGT 1395
Query 1481 ACAACCTGCGGGACGCGGTTTCACGGTCCACCGTTCAAGTATATCCGAGGGCATGGACAG 1540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 ACAACCTGCGGGATGCGGTTTCACGGTCCACCGTTCAAGTATATCCGAGGGCATGGACAG 1455
Query 1541 CGATCTACATAGCGTTGGATAATGTTGGGATGTGGAACATAAGGTCGGAGAATTGGGCAA 1600
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1456 CGATCTACATAGCATTGGATAATGTGGGGATGTGGAACATAAGGTCGGAGAATTGGGCAA 1515
Query 1601 GACAGTATTTGGGGCAACAATTCTATCTTCGAGTTTACACTTCCTCTACTTCGTACCGAG 1660
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1516 GACAGTATTTAGGGCAACAATTCTATCTCCGAGTTTACACTTCCTCTACTTCGTACAGAG 1575
Query 1661 ATGAATATCCACCACCAAAGAACGCTCTTATGTGCGGACGAGCTAAAGGCCGCCACACTA 1720
|||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct 1576 ATGAGTATCCACCACCAAAGAACGCTCTTATGTGCGGACTAGCTAGAGGCCGCCACACCA 1635
Query 1721 GGCCATTCTAAAAGGGATATTGGACGCAACG 1751
||||||||||||||||||||||||||| |||
Sbjct 1636 GGCCATTCTAAAAGGGATATTGGACGCGACG 1666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74542609465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5