BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G22020.1

Length=1191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg889972 jgi|Araly1|889972|Al_scaffold_0007_1958                    388    4e-107


> Ahg889972 jgi|Araly1|889972|Al_scaffold_0007_1958
Length=444

 Score =  388 bits (210),  Expect = 4e-107
 Identities = 286/320 (89%), Gaps = 15/320 (5%)
 Strand=Plus/Plus

Query  884   gaggtggaggcggtggtggaaatggatctggttatggaagtggtagtggttacggttctg  943
             |||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct  128   GAGGTGGAGGAGGTGGTGGAAATGGATCTGGTTACGGAAGTGGTAGTGGTTATGGTTCTG  187

Query  944   gtatgggaaaaggtagtggtagtggtggc---ggtggt------ggt---ggtggtggtg  991
             | | ||| ||||||||||||| ||| |||   ||||||      |||   ||||||||||
Sbjct  188   GAACGGGCAAAGGTAGTGGTATTGGAGGCGGTGGTGGTGGAGGAGGTGGAGGTGGTGGTG  247

Query  992   gaggtagcggtggAGGCAACGGAAGCggaagtggaagtggagaaggatatggaatgggag  1051
             ||||||| || ||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct  248   GAGGTAGTGGCGGAGGCAGCGGAAGTGGAAGTGGAAGAGGAGAAGGATATGGAATGGGAG  307

Query  1052  gaggagccggaacaggcaatggaggaggagggggagtgggttttggaatgggCATTGGAT  1111
             |||||||||||||||||||||||||||||||   |||||||||||||||||||||||| |
Sbjct  308   GAGGAGCCGGAACAGGCAATGGAGGAGGAGG---AGTGGGTTTTGGAATGGGCATTGGCT  364

Query  1112  TTGGTATTGGCATTGGAGGAGGAAGTGGTGGTGGTACCACTTATCAAACCAATCTTACCG  1171
             ||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct  365   TTGGTATAGGCATCGGAGGAGGAAGTGGTGGTGGTACCACTTACCAAACCAATCTAACCG  424

Query  1172  GTGATAAAAATTCTCCCTAG  1191
             ||||||||| ||||||||||
Sbjct  425   GTGATAAAAGTTCTCCCTAG  444


 Score =  215 bits (116),  Expect = 7e-55
 Identities = 124/128 (97%), Gaps = 0/128 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTACTCATTCAAGGTTTATATACGTGCTTCTTCTTCTTTCATGCATTGTTTTTGCA  60
            ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct  1    ATGGCTACTCATTCAAGGTTTTTATACGTGCTTCTTCTTATTTCATGCATTGTTTTTGCA  60

Query  61   TTGCTTGGGGGTAGTTGTGGAGATAGTGTGGAGAATAACAATGACGATGATGATTGTTCT  120
            ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  61   TTGCTTGGGGGAAGTTGTGGAGATAATGTGGAGAATAACAATGACGATGATGATTGTTCT  120

Query  121  TCCCGGAG  128
            ||||||||
Sbjct  121  TCCCGGAG  128



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44451321222


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5