BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G22030.1 Length=1881 Score E Sequences producing significant alignments: (Bits) Value Ahg945944 jgi|Araly1|945944|scaffold_702173.1 1929 0.0 > Ahg945944 jgi|Araly1|945944|scaffold_702173.1 Length=1451 Score = 1929 bits (1044), Expect = 0.0 Identities = 1169/1230 (95%), Gaps = 5/1230 (0%) Strand=Plus/Plus Query 1 ATGGCGTCATTACAGGCTTCAAGATTTATGCTTACTACTTCTTGTTCTTCTTGCACAAGA 60 ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 21 ATGGCTTCACTACAGGCTTCAAGACTTATGCTTACTACTTCTTGTTCTTCTTGCACAAGA 80 Query 61 ACAAGATCCGCAATCTCAATCCC-AAAGTTACCAAAATTTAATGTCTCGATTCCGCAAAT 119 |||||||||||| | |||||||| ||| |||| |||||||||||| | || |||||||| Sbjct 81 ACAAGATCCGCAGTTTCAATCCCTAAA-TTACGGAAATTTAATGTCGCAATCCCGCAAAT 139 Query 120 ACCGATCAAGAACCGGAATTTCAGAGTCGAAGAACCGA-TTCTTCGGTTGGATGGGTTTG 178 |||||||||||||||||||||||||||||| ||||||| || ||||||||||||| |||| Sbjct 140 ACCGATCAAGAACCGGAATTTCAGAGTCGAGGAACCGAGTT-TTCGGTTGGATGGTTTTG 198 Query 179 CTGAAGATCTTGATCTTTCGTTGTCAGAGAGACAAAGGCAAAAGAAGAGAGGGTGCGATG 238 |||||||| ||||||||||| ||| ||||| ||||||||| ||||||||||||||||||| Sbjct 199 CTGAAGATTTTGATCTTTCGCTGTTAGAGAAACAAAGGCAGAAGAAGAGAGGGTGCGATG 258 Query 239 ATCAGGTTTTGCAAAGGTCGCGGCTCATGGCGGTTCTTGAAGAAGTTATAGATAGAGTGG 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 259 ATCAGGTTTTGCAAAGGTCGCGGCTCATGGCGGTTCTTGAAGAAGTTATAGATAGAGTAG 318 Query 299 AGATGCACAAGAACATTGGAGAGCAACGCAATAACTGGAACTCTCTCTTGCTCAATTCCG 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 319 AGATGCACAAGAACATTGGAGAGCAACGCAATAACTGGAACTCTCTCTTGCTCAATTCCG 378 Query 359 TCAATATGATCACTCTCACTGCCGCTTTGATGGCCGGAATAGCCTCTATGAACGCCAGTG 418 |||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||| ||| Sbjct 379 TCAACATGATTACTCTCACTGCTGCTTTGATGGCCGGAATAGCTTCTATGAACGCCGGTG 438 Query 419 GAATAGATTCCGTTTCCGCGGTGAGTATAGCTTCTACGGTGTTGCTGGCTTCTGCTACAG 478 || |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 439 GAGTAGATTCCGTTTCCGCGGTGAGTATAGCCTCTACGGTGTTGCTTGCTTCTGCTACAG 498 Query 479 GTTTGGCTGCCTTGATGAACAAGATTCAGCCTTCACAGCTTGTGGAGGAGCAGAGGAACG 538 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 499 GTTTGGCTGCCTTGATGAACAAGATTCAGCCGTCACAGCTTGTGGAAGAGCAGAGGAACG 558 Query 539 CAACGAGGCTGTTCAAGCAGCTAAGAAACAGAATCGAGATGGTTCTGAGGGAGAAAAGTG 598 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 559 CGACGAGGTTGTTCAAGCAGCTAAGAAACAGAATCGAGATGGTTCTGAGGGAGAAAAGTG 618 Query 599 AAGATGGAATCAGTGAAGAAGACGTGAAAGAAGCGATAAAGAGAGTGCTCTGTTTGGACA 658 |||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |||| Sbjct 619 AAGATGGAATCAGTGAAGCAGACGTGAAAGAAGCTATAAAGAGAGTACTCTGTTTAGACA 678 Query 659 AAGCTTACCCACTTCCTCTAGTTGGCACCATGCTCGAGAAGTTCCCTCAAGAATTCAAGC 718 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 679 AAGCTTATCCACTTCCTCTAGTCGGCACCATGCTCGAGAAGTTCCCTCAAGAATTCAAGC 738 Query 719 CAGCGACTTGGTGGCCTGAAACAAAACCCGAACCCACTCATTCCAGAACGGAAGCTAACG 778 |||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||| Sbjct 739 CAGCGACTTGGTGGCCCGAAACAAAACCCGAATCCACTCATTCCAGAGCCGAAGCTAACG 798 Query 779 GGTGGAACTCGGAGCTagagatggagatgagagaggtggttgaggtaattaagagtagag 838 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 799 GGTGGAACTCGGAGCTAGAGATGGAGATGAGAGAGGTGGTTGAGGTTATTAAGAGTAGAG 858 Query 839 atgcagaggagtacgagaAGTTAGGTAACGTGGCCTTGAAGTTAAACCGGGTTTTGGCAA 898 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 859 ATGCAGAGGAGTACGAGAAATTAGGTAACGTGGCATTGAAGTTAAACCGGGTTTTGGCAA 918 Query 899 TCTCTGGACCAGTGTTGACCGGAATTGCTGCCGTAAGTTCCGGTTTTATAGGTCACGGTT 958 |||||||||| ||||| |||||||| ||||| |||||||||||||||||||| ||||||| Sbjct 919 TCTCTGGACCGGTGTTAACCGGAATCGCTGCTGTAAGTTCCGGTTTTATAGGGCACGGTT 978 Query 959 CAGGTTTAGCTGGAGTAGTAGCAACAACGTGTGCTTCATTGGCTGCCGTAGTGAACACGT 1018 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 979 CAGGTTTAGCTGGAGTAGTAGCAACAACGTGTGCTTCATTGGCTGCCGTAATGAACACGT 1038 Query 1019 TAGAGCACGGAGGTCAAGTAGGGATGGTGGTTGAGATGTATAGAAACTCCGCCGGATTCT 1078 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1039 TAGAGCACGGAGGTCAAGTAGGGATGGTGTTTGAGATGTATAGAAACTCCGCCGGATTCT 1098 Query 1079 TCTCTCTTATGGAAGATACGATCAAAACAGAGAGACGAGAGAATGGACAAGTTTTCGAGA 1138 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1099 TCTCTCTTTTGGAAGATACGATCAAAACAGAGAGAAGAGAGAATGGACAAGTTTTCGAGA 1158 Query 1139 CCAAAGTAGCGTTGAAACTTGGGAGAAGCTTGTCTGAATTGAGAGATCTGGCCAGAAGAT 1198 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1159 CCAAAGTAGCGTTGAAACTTGGGAGAAGCTTGTCTGAATTGAGAGATCTCGCCAGAAGAT 1218 Query 1199 CTAGCTTGTCTAGGTTTGATGGATCAAGCT 1228 |||||||||||||||| | |||||| ||| Sbjct 1219 CTAGCTTGTCTAGGTTACAAGGATCA-GCT 1247 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70657404475 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5