BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22030.1
Length=1881
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945944 jgi|Araly1|945944|scaffold_702173.1 1929 0.0
> Ahg945944 jgi|Araly1|945944|scaffold_702173.1
Length=1451
Score = 1929 bits (1044), Expect = 0.0
Identities = 1169/1230 (95%), Gaps = 5/1230 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCATTACAGGCTTCAAGATTTATGCTTACTACTTCTTGTTCTTCTTGCACAAGA 60
||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGCTTCACTACAGGCTTCAAGACTTATGCTTACTACTTCTTGTTCTTCTTGCACAAGA 80
Query 61 ACAAGATCCGCAATCTCAATCCC-AAAGTTACCAAAATTTAATGTCTCGATTCCGCAAAT 119
|||||||||||| | |||||||| ||| |||| |||||||||||| | || ||||||||
Sbjct 81 ACAAGATCCGCAGTTTCAATCCCTAAA-TTACGGAAATTTAATGTCGCAATCCCGCAAAT 139
Query 120 ACCGATCAAGAACCGGAATTTCAGAGTCGAAGAACCGA-TTCTTCGGTTGGATGGGTTTG 178
|||||||||||||||||||||||||||||| ||||||| || ||||||||||||| ||||
Sbjct 140 ACCGATCAAGAACCGGAATTTCAGAGTCGAGGAACCGAGTT-TTCGGTTGGATGGTTTTG 198
Query 179 CTGAAGATCTTGATCTTTCGTTGTCAGAGAGACAAAGGCAAAAGAAGAGAGGGTGCGATG 238
|||||||| ||||||||||| ||| ||||| ||||||||| |||||||||||||||||||
Sbjct 199 CTGAAGATTTTGATCTTTCGCTGTTAGAGAAACAAAGGCAGAAGAAGAGAGGGTGCGATG 258
Query 239 ATCAGGTTTTGCAAAGGTCGCGGCTCATGGCGGTTCTTGAAGAAGTTATAGATAGAGTGG 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 259 ATCAGGTTTTGCAAAGGTCGCGGCTCATGGCGGTTCTTGAAGAAGTTATAGATAGAGTAG 318
Query 299 AGATGCACAAGAACATTGGAGAGCAACGCAATAACTGGAACTCTCTCTTGCTCAATTCCG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 AGATGCACAAGAACATTGGAGAGCAACGCAATAACTGGAACTCTCTCTTGCTCAATTCCG 378
Query 359 TCAATATGATCACTCTCACTGCCGCTTTGATGGCCGGAATAGCCTCTATGAACGCCAGTG 418
|||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||| |||
Sbjct 379 TCAACATGATTACTCTCACTGCTGCTTTGATGGCCGGAATAGCTTCTATGAACGCCGGTG 438
Query 419 GAATAGATTCCGTTTCCGCGGTGAGTATAGCTTCTACGGTGTTGCTGGCTTCTGCTACAG 478
|| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 439 GAGTAGATTCCGTTTCCGCGGTGAGTATAGCCTCTACGGTGTTGCTTGCTTCTGCTACAG 498
Query 479 GTTTGGCTGCCTTGATGAACAAGATTCAGCCTTCACAGCTTGTGGAGGAGCAGAGGAACG 538
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 499 GTTTGGCTGCCTTGATGAACAAGATTCAGCCGTCACAGCTTGTGGAAGAGCAGAGGAACG 558
Query 539 CAACGAGGCTGTTCAAGCAGCTAAGAAACAGAATCGAGATGGTTCTGAGGGAGAAAAGTG 598
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 CGACGAGGTTGTTCAAGCAGCTAAGAAACAGAATCGAGATGGTTCTGAGGGAGAAAAGTG 618
Query 599 AAGATGGAATCAGTGAAGAAGACGTGAAAGAAGCGATAAAGAGAGTGCTCTGTTTGGACA 658
|||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 619 AAGATGGAATCAGTGAAGCAGACGTGAAAGAAGCTATAAAGAGAGTACTCTGTTTAGACA 678
Query 659 AAGCTTACCCACTTCCTCTAGTTGGCACCATGCTCGAGAAGTTCCCTCAAGAATTCAAGC 718
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 679 AAGCTTATCCACTTCCTCTAGTCGGCACCATGCTCGAGAAGTTCCCTCAAGAATTCAAGC 738
Query 719 CAGCGACTTGGTGGCCTGAAACAAAACCCGAACCCACTCATTCCAGAACGGAAGCTAACG 778
|||||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||||
Sbjct 739 CAGCGACTTGGTGGCCCGAAACAAAACCCGAATCCACTCATTCCAGAGCCGAAGCTAACG 798
Query 779 GGTGGAACTCGGAGCTagagatggagatgagagaggtggttgaggtaattaagagtagag 838
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 799 GGTGGAACTCGGAGCTAGAGATGGAGATGAGAGAGGTGGTTGAGGTTATTAAGAGTAGAG 858
Query 839 atgcagaggagtacgagaAGTTAGGTAACGTGGCCTTGAAGTTAAACCGGGTTTTGGCAA 898
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 859 ATGCAGAGGAGTACGAGAAATTAGGTAACGTGGCATTGAAGTTAAACCGGGTTTTGGCAA 918
Query 899 TCTCTGGACCAGTGTTGACCGGAATTGCTGCCGTAAGTTCCGGTTTTATAGGTCACGGTT 958
|||||||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 919 TCTCTGGACCGGTGTTAACCGGAATCGCTGCTGTAAGTTCCGGTTTTATAGGGCACGGTT 978
Query 959 CAGGTTTAGCTGGAGTAGTAGCAACAACGTGTGCTTCATTGGCTGCCGTAGTGAACACGT 1018
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 979 CAGGTTTAGCTGGAGTAGTAGCAACAACGTGTGCTTCATTGGCTGCCGTAATGAACACGT 1038
Query 1019 TAGAGCACGGAGGTCAAGTAGGGATGGTGGTTGAGATGTATAGAAACTCCGCCGGATTCT 1078
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1039 TAGAGCACGGAGGTCAAGTAGGGATGGTGTTTGAGATGTATAGAAACTCCGCCGGATTCT 1098
Query 1079 TCTCTCTTATGGAAGATACGATCAAAACAGAGAGACGAGAGAATGGACAAGTTTTCGAGA 1138
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1099 TCTCTCTTTTGGAAGATACGATCAAAACAGAGAGAAGAGAGAATGGACAAGTTTTCGAGA 1158
Query 1139 CCAAAGTAGCGTTGAAACTTGGGAGAAGCTTGTCTGAATTGAGAGATCTGGCCAGAAGAT 1198
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1159 CCAAAGTAGCGTTGAAACTTGGGAGAAGCTTGTCTGAATTGAGAGATCTCGCCAGAAGAT 1218
Query 1199 CTAGCTTGTCTAGGTTTGATGGATCAAGCT 1228
|||||||||||||||| | |||||| |||
Sbjct 1219 CTAGCTTGTCTAGGTTACAAGGATCA-GCT 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70657404475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5