BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22060.1
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354556 jgi|Araly1|354556|fgenesh1_pg.C_scaffold_7001729 797 0.0
> Ahg354556 jgi|Araly1|354556|fgenesh1_pg.C_scaffold_7001729
Length=1515
Score = 797 bits (431), Expect = 0.0
Identities = 825/1004 (82%), Gaps = 71/1004 (7%)
Strand=Plus/Plus
Query 229 GAAAAAGAG-AAGATATATAGGATTCAAAATCTTGGTGTTGAATTCGCAAATAGTCACTG 287
||||||||| ||| | |||||||| ||| ||||||||||||| |||| || |||||| ||
Sbjct 547 GAAAAAGAGAAAG-TGTATAGGATACAAGATCTTGGTGTTGAGTTCGTAAGTAGTCATTG 605
Query 288 TTTGGCGATTTATGGAAGTTGGCTCTTTATGAGAGATCCTAGATATAAGCTCTATATAAT 347
|||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 606 TTTGGCAATTTATGGAAGTTGGCTCTTTATGAAAGATCCTAGATATAATCTCTATATTAT 665
Query 348 GAATTTGTTTACTCGTGAGAGAATTAATCTTCCGTCTGTGGAGTCTCAATTTGGTAGGAT 407
|||| | |||||||| ||||| ||||||||||||||||||||| | |||||||||| ||
Sbjct 666 GAATCTATTTACTCGCGAGAGGATTAATCTTCCGTCTGTGGAGGCAGAATTTGGTAGAAT 725
Query 408 AAAGATTGAACAAATTA-ACGATGATTTGTT-C-TATAGAAAAGTTGATGATGAATATGA 464
||||||||||| || | | |||||| |||| | |||| |||| ||||||||||||||
Sbjct 726 AAAGATTGAACGAACCATA-GATGATATGTTCCGTATA-AAAA-TTGATGATGAATAT-- 780
Query 465 TTACC---ATCCT-AAAAGACACATGATCGATATTAGTG-ACCATATATTATGGATAGAT 519
|| || ||||| |||| | || ||| ||||| | | || |||||| |||||||||
Sbjct 781 TT-CCATTATCCTGAAAA-AGAC---ATCCATATT-GAGCTCCCTATATTGTGGATAGAT 834
Query 520 GATAAGACCAAAGATTATGTGGTTATGTGG-TCATTC-GAGTGCGGATACACATATATGG 577
|| || |||||||||||||||||||||||| | || | || || |||| | | | |||
Sbjct 835 GAAAAAACCAAAGATTATGTGGTTATGTGGTTAATGCAAAG-GC-AATACCCGTGTCTGG 892
Query 578 TTTATTGCAGAACTGGAGATAATATTTGGAATTAC-CGCAGTCTTGATAT-ATCGACTGT 635
||||||| |||| |||||||||| ||||||| || || | || | || || || |
Sbjct 893 TTTATTGTAGAAATGGAGATAATCTTTGGAA--ACATGC--TATT-A-ATGAT-TACAG- 944
Query 636 TAACATAGTATACAAAGATCATAAGATGTACTTGTATAGTTA-CACTCGTGATGTCAAAG 694
| | || |||||||||||||||||||| |||||||||| || | | |||||||||||||
Sbjct 945 TGATATGGTATACAAAGATCATAAGATTTACTTGTATA-ATAGCTCGCGTGATGTCAAAG 1003
Query 695 TCTTGGATTTTTGTGAAGATATTCCGCGACAAATCTTTGAAACGCAAGTTAATTATGATA 754
| ||||| |||| || ||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 1004 TTTTGGAATTTTCTGGAGATATTCCACGACAAATCTTTGAAACGCACGTTAACTATGAT- 1062
Query 755 TA-TTAATGGAAAAAGG-AT-TCAGAA-G---TGA--C---G-TTGATGATGTGTT-GAA 800
| || ||||| || || ||||| | | | | | ||| |||||| || | |
Sbjct 1063 GAGGCGATAGAAAAGGGAATGCCAGAACGTATTTACCCAGAGCTTGGTGATGT-TTGGCA 1121
Query 801 TGATAAAAAGGAA--CATCTTGTAGTCACATTAAATGGAGATGTCCTTAGAGTTAAGAGC 858
| || |||| ||| ||||||||||||||| | | |||||| ||| ||||||||||||
Sbjct 1122 T-ATCAAAA-GAACGCATCTTGTAGTCACACTGACTGGAGAAACCCTCAGAGTTAAGAGC 1179
Query 859 AAAATATGGGA-TAATAGT-GACGTTTGGTCCTTCTGCATCTACAAGTTGAATTCTTCTA 916
| |||| ||| | || | || |||||||||||| |||| ||||| | |||||||| |
Sbjct 1180 ATGATAT-GGAGTCAT-CTGGATGTTTGGTCCTTCCGCATTTACAAACTAAATTCTTCAA 1237
Query 917 ATACTTACTGGGAGAAACTCACTTCTTTGGGAGACGAGGCAATACTTTTGGATCTAGGTA 976
||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |||||
Sbjct 1238 ATACTGACTGGGAGAAACTTACTTCTTTGGGAGACGAGGCAGTACTTTTGGATCAAGGTA 1297
Query 977 TCACTGTACTTGCCAACACCATCGAAGGAATCAATAGAAATTCAATATATTTCAGTGGTT 1036
||||||| || |||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TCACTGTGCTAGCCAGCGCCACCGAAGGAATCAATAGAAATTCAATATATTTCAGTGGTT 1357
Query 1037 ATCATCGCC-CTCATTATTTCAGATTCGATCATGTTTGGAGTGAAAAAGATAT-TTGTGT 1094
||||| | || | ||| ||| |||| ||||||||||||||||||||| || |||
Sbjct 1358 ATCAT-GATTCTGAATAT----GAT--GATCGTGTTTGGAGTGAAAAAGATATATT-TGT 1409
Query 1095 CTTCAATCTTGACACACAAGAAGTTGAAAGACCACATCAAAGTATTTGTTCGTCCATTCA 1154
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1410 CTTCAATCTCGACACACAAGAAGTTGAAAGACCACATCAAAGTTTTTGTTCGTCCATTCA 1469
Query 1155 AATATCTGGTGCACGATGGTTTGTGCCAAATTTCAAACATATAT 1198
| |||| | |||||||||||||||||||||||||||||||||||
Sbjct 1470 ATTATCCGATGCACGATGGTTTGTGCCAAATTTCAAACATATAT 1513
Score = 56.5 bits (30), Expect = 5e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 169 CCTTGGCTCATTATGTTTCCAGAAAAAGGTAAA 201
||||||||||||||||||||||||||||| |||
Sbjct 519 CCTTGGCTCATTATGTTTCCAGAAAAAGGAAAA 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52412177120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5