BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22070.1
Length=1778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329411 jgi|Araly1|329411|fgenesh1_pm.C_scaffold_7001638 2621 0.0
Ahg475116 jgi|Araly1|475116|fgenesh2_kg.2__246__AT1G62300.1 390 2e-107
> Ahg329411 jgi|Araly1|329411|fgenesh1_pm.C_scaffold_7001638
Length=1617
Score = 2621 bits (1419), Expect = 0.0
Identities = 1552/1618 (96%), Gaps = 2/1618 (0%)
Strand=Plus/Plus
Query 159 ATGTTCCGGTTTCCAGTGAGTCTAGGCGGTTCACGTGACGAAGACCGTCACGATCAGATC 218
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1 ATGTTCCGGTTTCCAGTGAGTCTAGGTGGTTCACGTGACGAAGCCCGTCACGATCAGATC 60
Query 219 ACACCGTTGGATGACCATCGTGTGGTGGTTGATGAGGTTGACTTCTTCTCAGAGAAGAGA 278
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACACCGTTGGATGAGCATCGTGTGGTGGTTGATGAGGTTGACTTCTTCTCAGAGAAGAGA 120
Query 279 GATAGGGTTTCACGTGAGAACATCAACGACGACGACGACGAAGGCAATAAGGTTCTCATC 338
|||||||||||||||||||||||||||||||| |||||||||| |||||||| || | ||
Sbjct 121 GATAGGGTTTCACGTGAGAACATCAACGACGAAGACGACGAAGCCAATAAGGCTCACGTC 180
Query 339 AAAATGGAGGGTTCACGAGTTGAAGAAAACGATCGTTCCAGAGATGTCAATATCGGTCTG 398
||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 181 AAAATGGAGAATTCACGAGTTGAAGAAAACGATCGTTCCAGAGATGTCATTATCGGGCTG 240
Query 399 AATCTTCTGACCGCGAATACGGGAAGCGATGAGTCAACGGTGGATGATGGACTATCAATG 458
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 AATCTTCTCACCGCGAATACGGGAAGCGATGAATCAACGGTGGATGATGGACTATCAATG 300
Query 459 GATATGGAAGATAAACGTGCAAAGATTGAGAACGCACAACTACAAGAAGAGCTCAAGAAG 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATATGGAAGATAAACGTGCAAAGATTGAGAACGCACAACTACAAGAAGAGCTCAAGAAG 360
Query 519 ATGAAAATAGAGAATCAAAGGCTAAGAGATATGTTGAGCCAAGCGACGACCAACTTCAAT 578
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 361 ATGAAAATAGAGAATCAAAGGCTAAGAGATATGTTGAACCAAGCGGCGACCAACTTCAAT 420
Query 579 GCCTTACAAATGCAACTTGTTGCCGTCATGAGGCAACAAGAACAACGTAACTCTTCACAA 638
||||||||||||||||||||| |||| |||||||||||||||||||||||||| || |||
Sbjct 421 GCCTTACAAATGCAACTTGTTACCGTTATGAGGCAACAAGAACAACGTAACTCCTCCCAA 480
Query 639 GATCATCTCCTGGCT-CAGGAGAGCAAAGCAGAAGGAAGGAAACGGCAGGAACTGCAAAT 697
||||||||||||||| | |||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 481 GATCATCTCCTGGCTAC-GGAGGGCAGAGCGGAAGGAAGGAAACGGCAGGAACTGCAAAC 539
Query 698 CATGGTGCCAAGGCAGTTCATGGACCTTGGGCCGTCGTCTGGAGCAGCAGAGCATGGAGC 757
||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 540 CATGGTGCCAAGGCAGTTCATGGACCTCGGGCCGTCGTCTGGCGCGGCAGAGCATGGAGC 599
Query 758 CGAAGTGTCATCTGAAGAGAGGACAACGGTTCGTTCAGGTTCTCCTCCTTCGCTTCTAGA 817
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 CGAAGTATCATCTGAAGAGAGGACAACGGTTCGTTCGGGTTCTCCTCCTTCGCTTCTAGA 659
Query 818 AAGTTCCAATCCCCGAGAGAACGGAAAGAGGTTGCTTGGAAGAGAAGAAAGCTCAGAGGA 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAGTTCCAATCCCCGAGAGAACGGAAAGAGGTTGCTTGGAAGAGAAGAAAGCTCAGAGGA 719
Query 878 ATCAGAGTCTAACGCCTGGGGAAACCCTAACAAAGTCCCCAAACATAATCCATCCTCTAG 937
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATCCGAGTCTAACGCCTGGGGAAACCCTAACAAAGTCCCCAAACATAATCCATCCTCTAG 779
Query 938 CAATAGCAATGGAAACAGAAACGGAAATGTTATTGATCAGTCGGCCGCAGAAGCCACCAT 997
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CAACAGCAATGGAAACAGAAACGGAAATGTTATTGATCAGTCGGCCGCAGAAGCCACCAT 839
Query 998 GCGGAAAGCCCGTGTCTCAGTTCGTGCCCGATCTGAAGCTGCCATGATAAGCGATGGATG 1057
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 GCGGAAAGCCCGTGTCTCAGTTCGTGCCCGATCTGAAGCTGCGATGATAAGCGATGGATG 899
Query 1058 TCAATGGAGAAAGTACGGACAAAAAATGGCTAAAGGAAACCCGTGTCCGCGGGCTTATTA 1117
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 900 TCAATGGAGAAAGTACGGACAAAAAATGGCTAAAGGAAACCCGTGTCCGCGAGCTTATTA 959
Query 1118 TCGTTGCACAATGGCCGGTGGATGTCCAGTTCGCAAGCAAGTGCAGCGTTGCGCAGAAGA 1177
||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 960 TCGCTGCACAATGGCCGGTGGATGTCCTGTTCGCAAGCAAGTGCAACGTTGCGCAGAAGA 1019
Query 1178 CAGATCTATTCTCATAACCACCTACGAAGGAAACCACAACCATCCACTCCCACCAGCCGC 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CAGATCTATTCTCATAACCACCTACGAAGGAAACCACAACCATCCACTCCCACCAGCCGC 1079
Query 1238 TACGGCCATGGCCTCAACAACCACCGCAGCTGCAAGCATGCTCCTCTCGGGCTCAATGTC 1297
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 TATGGCCATGGCCTCAACAACCACCGCAGCCGCAAGCATGCTCCTCTCGGGCTCAATGTC 1139
Query 1298 GAGTCAAGACGGTTTAATGAACCCAACAAACCTCCTAGCTCGAGCTATCTTGCCTTGCTC 1357
||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1140 GAGCCAAGACGGTTTAATGAACCCAACAAACCTCTTAGCTCGAGCCATCTTGCCTTGCTC 1199
Query 1358 CTCAAGCATGGCTACAATCTCAGCCTCCGCACCATTCCCAACCATCACATTGGACCTCAC 1417
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CTCAAGCATGGCCACAATCTCAGCCTCCGCACCATTCCCAACCATCACATTGGACCTCAC 1259
Query 1418 CAATTCACCCAACGGTAACAACCCTAATATGACCACTAATAACCCGTTGATGCAGTTCGC 1477
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CAATTCACCCAACGGCAACAACCCTAATATGACCACTAATAACCCGTTGATGCAGTTCGC 1319
Query 1478 TCAACGGCCCGGTTTCAACCCGGCAGTTTTGCCTCAAGTGGTTGGTCAAGCTATGTACAA 1537
||||||||| |||||||||||||| ||||||||||||||||| || ||| |||||| |
Sbjct 1320 TCAACGGCCTGGTTTCAACCCGGCGGTTTTGCCTCAAGTGGTCGGCCAAACTATGTTTTA 1379
Query 1538 TAACCAACAACAGTCCAAGTTTTCTGGTTTACAGTTACCGGCTCAGCCACTGCAGATCGC 1597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1380 TAACCAACAACAGTCCAAGTTTTCTGGTTTACAGTTACCGGCTCAGCCACTGCAGATCCC 1439
Query 1598 GGCCACTTCCTCGGTGGCCGAGAGCGTTAGTGCTGCCAGTGCAGCAATTGCGTCCGATCC 1657
| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1440 GACCACTTCCTCGGTGGCCGAGAGCGTCAGTGCTGCCAGTGCAGCGATTGCGTCCGATCC 1499
Query 1658 AAACTTTGCGGCGGCTCTAGCGGCAGCGATCACGTCCATTATGAACGGTTCCAGTCATCA 1717
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 1500 AAACTTTGCGGCGGCTCTAGCGGCAGCAATTACCTCCATTATGAACGGTTCCAGTCATCA 1559
Query 1718 AAATAATAACACCAATAATAATAATGTGGCTACGAGCAACAATGACAGTAGGCAATAA 1775
|||||||||||||||| ||||||||||||||| |||||| ||||| ||||||||||
Sbjct 1560 GAATAATAACACCAATAGTAATAATGTGGCTACAAGCAACGGTGACACTAGGCAATAA 1617
> Ahg475116 jgi|Araly1|475116|fgenesh2_kg.2__246__AT1G62300.1
Length=1958
Score = 390 bits (211), Expect = 2e-107
Identities = 371/449 (83%), Gaps = 8/449 (2%)
Strand=Plus/Plus
Query 982 CCGCAGAAGCCACCATGCGGAAAGCCCGTGTCTCAGTTCGTGCCCGATCTGAAGCTGCCA 1041
|||| ||||| || ||| |||||||||||||||| |||||||||||||| |||||| |||
Sbjct 1003 CCGCTGAAGCTACGATGAGGAAAGCCCGTGTCTCGGTTCGTGCCCGATCGGAAGCTCCCA 1062
Query 1042 TGATAAGCGATGGATGTCAATGGAGAAAGTACGGACAAAAAATGGCTAAAGGAAACCCGT 1101
||||||||||||||||||||||||||||||| || || || ||||||||||| || || |
Sbjct 1063 TGATAAGCGATGGATGTCAATGGAGAAAGTATGGCCAGAAGATGGCTAAAGGGAATCCTT 1122
Query 1102 GTCCGCGGGCTTATTATCGTTGCACAATGGCCG-GTGGATGTCCAGTTCGCAAGCAAGTG 1160
|||| ||||| ||||| || |||||||||||| | || ||||| |||||||| || ||
Sbjct 1123 GTCCTCGGGCATATTACCGCTGCACAATGGCCACG-GGTTGTCCCGTTCGCAAACAGGTT 1181
Query 1161 CAGCGTTGCGCAGAAGACAGATCTATTCTCATAACCACCTACGAAGGAAACCACAACCAT 1220
|| ||||| || ||||||||||| ||||| ||||| |||||||| |||||||| ||||||
Sbjct 1182 CAACGTTGTGCGGAAGACAGATCAATTCTGATAACGACCTACGAGGGAAACCATAACCAT 1241
Query 1221 CCACTCCCACCAGCCGCTACGGCCATGGCCTCAACAACCACCGCAGCTGC-AAGCATGCT 1279
|| | || |||||||| ||||||||| || || ||||| || || || || |||| |
Sbjct 1242 CCGTTGCCGCCAGCCGCGGTGGCCATGGCTTCTACCACCACGGCTGCGGCTAA-CATGTT 1300
Query 1280 CCTCTCGGGCTCAATGTCGAGTCAAGACGGTTTAATGAACCCAACAAACCTCCTAGCTCG 1339
|| || || |||||||| |||||||| || | |||||||| ||||| | |||||| |
Sbjct 1301 GCTATCTGGATCAATGTCTAGTCAAGATGGGATGATGAACCCTACAAATTTACTAGCTAG 1360
Query 1340 AGCTAT-CTTGCCTTGCTCCTCAAGCATGGCTACAATCTCAGCCTCCGCACCATT-CCCA 1397
||| | ||| ||||||||| |||||||||| ||||||||||||||||| || || ||||
Sbjct 1361 GGCTGTTCTT-CCTTGCTCCACAAGCATGGCCACAATCTCAGCCTCCGCGCCGTTTCCCA 1419
Query 1398 ACCATCACATTGGACCTCACCAATTCACC 1426
|| ||||||| ||||||||| | |||||
Sbjct 1420 -CCGTCACATTAGACCTCACCCACTCACC 1447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66734109240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5