BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22080.1
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492665 jgi|Araly1|492665|fgenesh2_kg.7__2098__AT4G22080.1 2283 0.0
> Ahg492665 jgi|Araly1|492665|fgenesh2_kg.7__2098__AT4G22080.1
Length=1481
Score = 2283 bits (1236), Expect = 0.0
Identities = 1405/1486 (95%), Gaps = 14/1486 (1%)
Strand=Plus/Plus
Query 1 CACCTTCTAATCTTTCCGACACAATCTCTCATCTAAACACTTCCTTAAGTACTTGCCCAT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 CACCTTCTAATCTTTCCGACACAATCTCTCATCTAAACACTCCCTTAAGTACTTGCCCAT 60
Query 61 CTTTTCTCTTTTCTTAGTATCGATCCCTACTCAAACCATAAACCCACCCAACCATGACTC 120
||||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||
Sbjct 61 CTTTTCTCTTTTCTTAG--T--ATCCCTACTCAAACCTTAAACCCACCCGACCATGACTC 116
Query 121 TTTTCACCGTTTCGTGCCTCCTCGTGGTACTATTCTTATGTCATTCCTTGGTCCATGCCG 180
||||||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct 117 TTTTCACCGTTTCTTGCCTCCTCGTGGCACTATTCTTATGTCAGTCATTGGTCCATGCCG 176
Query 181 AAAATAATGGTTATTACGGGTATACCCCCACGGTTGCCAACTACCTCCCCGAGAAACCGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 177 TAAATAATGGTTATTACGGGTATACCCCCACGGTTGCCAACTACCTCCCCGAGAAACCTC 236
Query 241 AGAACATCATGAATCCGGTGGACTCCTGTTGGCGGCTCAAGTCTGACTGGGCTGCCAATC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 237 AGAACATCATGAATCCGGTGGACTCCTGTTGGCGGCTCAAGTCTGACTGGGCTGTCAATC 296
Query 301 GTAAAGACCTAGCGGATTGCGTGGTTGGATTCGGTTCATCTACCTTGGGCGGAAAGAAAG 360
|||||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 297 GTAAAGACCTAGCGAATTGCGTGGTTGGGTTTGGTTCATCTACCTTGGGCGGCAAGAAAG 356
Query 361 GTAATTTATACGTTGTCACAAACCCTTACGACAATGCACAGAATCCTCAACCAGGTTCTT 420
|||| ||||| ||||||||||||||| ||||||||||||| || ||||||||||||||||
Sbjct 357 GTAAGTTATATGTTGTCACAAACCCTAACGACAATGCACAAAACCCTCAACCAGGTTCTT 416
Query 421 TGCGGTACGGCGTGATCCAAGCCAAACCATTGTGGATCACTTTCGCTAAGGATATGGTCA 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 417 TGCGGTACGGCGTGATCCAAGCCAAGCCATTGTGGATCACTTTCGCTAAGGATATGGTCA 476
Query 481 TAACCCTAGAAAATGAGCTCATGGTCAATAGCTATAAAACCATTGATGGGAGAGGGGCAA 540
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 477 TAACCCTAGAGAATGAGCTCATGGTCAATAGCTATAAGACCATTGATGGGAGAGGGGCAA 536
Query 541 AAGTAGAAATCGCATACGGACCATGCATCACGATACAAGACGTGACGAACGTAATCGTGC 600
|||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 537 AAGTGGAAATTGCATACGGACCATGCATTACCATACAAGACGTGACGAACGTAATCGTGC 596
Query 601 ACGGGATCAGCATCCACGACTGCAAACCGGGGAAGTACGGTATGGTGAGGAGTAGCCCGA 660
|||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 597 ACGGGATCAGTATCCATGACTGCAAACCAGGGAAGTACGGAATGGTGAGGAGCAGCCCGA 656
Query 661 CGCATGTTGGTCACCGTAAGGGATCGGACGGTGATGCGATCGCTATTTTCGGTTCATCGA 720
||||||| ||||||||| ||||||||||||||||||| ||||||||||| || || ||||
Sbjct 657 CGCATGTCGGTCACCGTCAGGGATCGGACGGTGATGCTATCGCTATTTTTGGGTCGTCGA 716
Query 721 ATATTTGGATCGATCATTGTTACCTAGCGAGTTGTACGGACGGGCTCATCGATGTGATCC 780
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 717 ATGTTTGGATCGATCATTGTTACCTAGCAAGTTGTACGGACGGGCTCATCGATGTGATCC 776
Query 781 ATGCTTCCACGGGAATCACTATTTCCAACAACTATTTCACTCAGCATGACAAAGTGATGT 840
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ATGCTTCCACGGGAATCACAATTTCCAACAACTATTTCACTCAGCATGACAAAGTGATGT 836
Query 841 TACTTGGGCACAACGATGATTTTGTGCAAGATGTGAAAATGAAAGTGACCGTGGCATTCA 900
| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 837 TGCTTGGACACAACGATGATTTTGTTCAAGATGTGAACATGAAAGTGACCGTGGCATTCA 896
Query 901 ATCATTTTGGACCAGGACTTGTGGAGAGAATGCCAAGAGTAAGACGAGGGTACGCTCATG 960
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 897 ATCATTTTGGACCAGGACTTGTCGAGAGAATGCCAAGGGTAAGACGAGGGTACGCTCATG 956
Query 961 TGGCAAACAATAGATACGATAAATGGATAATGTATGCAATTGGTGGTAGCGCCGATCCAA 1020
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 957 TAGCAAACAATAGATACGATAAATGGATAATGTATGCAATTGGTGGTAGCGCCGATCCCA 1016
Query 1021 CCATTTTTAGTGAAGGCAACTATTTCATTGCTTCTGATAAATCTAACAGCAAAGAGGTGA 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1017 CCATTTTTAGTGAAGGCAACTATTTCATTGCTTCTGATAAATCTAACAGCAAGGAGGTGA 1076
Query 1081 CGAAGAGAGAAGTAAAAGGAGGATGGAACAATTGGAGATGGAGAACCTCAAAAGATGTTT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CGAAGAGAGAAGTAAAAGGAGGATGGAACAATTGGAGATGGAGAACCTCAAAAGATGTTT 1136
Query 1141 TCAAGAACGGAGCTTACTTCGTACCTTCTGGTTATGGCAGCATTTCGCTACCTTACAGTT 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1137 TCAAGAACGGAGCTTACTTCGTACCTTCTGGTTATGGCAGCATTTCGCTACCGTATAGTT 1196
Query 1201 CTGCTCAGCGATTCACAGTAGCTCCGGGAAACTTGGTTCCTTCTTTAACTGCAGACGCTG 1260
||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1197 CTGCTCAGCGATTCACAGTCGCTCCAGGAAACTTGGTTCCTTCTTTAACCGCAGACGCTG 1256
Query 1261 GCCCTCTAAACTGCAACCGCAACGGCCCTTGTTATTAGTATTCAT-ACTCTTTTCACGAG 1319
||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 1257 GCCCTCTAAACTGCAACCGCAACGGCCCTTGTTATTAGTATACATGA-TCTTTTCACGAG 1315
Query 1320 ATGCATCTAATTTCTGGTATAGCACGTTAATTTTCtttttttACTTAGTTGA-----A-C 1373
|| |||||||||||||||||||||||||| ||||| ||||||||||||||| | |
Sbjct 1316 ATTCATCTAATTTCTGGTATAGCACGTTACTTTTCCTTTTTTACTTAGTTGTGTTTGATC 1375
Query 1374 TATATATGTTTTGGTCTGGACTTGCTACA--TGTAGCACTGGTTATGAAAGATGAGAAAC 1431
|||||||||||||||||||| |||||||| || | ||||||||||||||||||||||||
Sbjct 1376 TATATATGTTTTGGTCTGGATTTGCTACACATGGATCACTGGTTATGAAAGATGAGAAAC 1435
Query 1432 GTCAAGAGTTTGTAAGAAAAGAATGAAAATTTTATTTATTTTGTGT 1477
| |||||| |||||||||||||||| | ||||| ||||||||||||
Sbjct 1436 GACAAGAGGTTGTAAGAAAAGAATGCATATTTTGTTTATTTTGTGT 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55268945495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5