BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22105.1
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945932 jgi|Araly1|945932|scaffold_702161.1 383 4e-106
> Ahg945932 jgi|Araly1|945932|scaffold_702161.1
Length=305
Score = 383 bits (207), Expect = 4e-106
Identities = 247/266 (93%), Gaps = 4/266 (2%)
Strand=Plus/Plus
Query 1 ATGAGATCTGCTACTTT-TTTCTTGGTTTCCTGTGTTCTCATGTCTTTCGTTTTGAGCCA 59
||||||||| ||||||| || |||||||| |||||| ||||||||||| |||||| |||
Sbjct 21 ATGAGATCTACTACTTTAGTT-TTGGTTTCTTGTGTTTTCATGTCTTTCATTTTGACCCA 79
Query 60 TGTTAAAGAAGTGGAAGCTGGATTGGATCCCATGGCGGCTAACCTACGCGTCCGGAAGGA 119
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 80 TGTGAAAGAAGTGGAAGCTGGATTTGATCCCATGGCGGCTAACCTACGCGTCCGGAAGGA 139
Query 120 TATATTTATCGGAGGATGCGGCCGG-GACGGAAACAAGACATGCATGAAAGACTTTGTTA 178
|||||||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 140 TATATTTATCGGGGGATGCGGC-GGCGACGGAAACAAAACATGCATGAAAGACTTTGTTA 198
Query 179 AGAAAGGAGGTGTGATGAATAAGCCCATTAGTTGCGAGTGTGATAACCTTGGATACGAAC 238
|||||||||||||||||||||| || |||||||||||||||||| || |||| |||||||
Sbjct 199 AGAAAGGAGGTGTGATGAATAAACCTATTAGTTGCGAGTGTGATGACTTTGGCTACGAAC 258
Query 239 ATTTATGCCGGTGTAATTTTTCTTGA 264
||||||||||||||||||||||||||
Sbjct 259 ATTTATGCCGGTGTAATTTTTCTTGA 284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9203370901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5