BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22115.1
Length=261
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945930 jgi|Araly1|945930|scaffold_702159.1 375 6e-104
> Ahg945930 jgi|Araly1|945930|scaffold_702159.1
Length=302
Score = 375 bits (203), Expect = 6e-104
Identities = 242/261 (93%), Gaps = 2/261 (1%)
Strand=Plus/Plus
Query 1 ATGAGATCTGCTACTTTATTGTTGGTTTCTTGTGTTCTTTTGTCTTTCATTTTGGGCAAT 60
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 21 ATGAGATCTGCTACTTTGTTGTTGGTTTCTTGTGTTCTTATGTCTTTCATTTTGGGCCAT 80
Query 61 GTTAAAGAAGTGGAAGCTGTGTTGAAGCCAATGGACCAATGCGGCCGGAAGGATATATTT 120
||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct 81 GTTAAAGAAGTGGAAGCTGCGTTGAATCCAATGGACCAATGTGGCCGGAAGGATATATTT 140
Query 121 TTGGGAGGATGCGGCAGCAACGGAAGCAAAACATGCATAAACGACTTTGTTAAGAAAGGA 180
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 141 TTGGGAGGATGCGGCGGCAACGGAAACAAAACATGCATAAACGACTTTGTTAAGAAAGGA 200
Query 181 GGTGTA-GCCGCTAAGCCTAGTAGTTGCGAGTGTGATGACTTTGGGGAAGAACATTTATG 239
|||| | || ||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 201 GGTGCAAGCAA-TAAACCTAGTAGTTGCGAGTGTGATAACTTTGGCGAAGAACATTTATG 259
Query 240 TAGATGTTATGTTCCTTGCTA 260
|||||||| ||||||||||
Sbjct 260 CCGATGTTATTTTCCTTGCTA 280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9088806118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5