BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22120.1
Length=2819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492658 jgi|Araly1|492658|fgenesh2_kg.7__2091__AT4G22120.2 3871 0.0
Ahg943210 jgi|Araly1|943210|scaffold_603754.1 2156 0.0
> Ahg492658 jgi|Araly1|492658|fgenesh2_kg.7__2091__AT4G22120.2
Length=2920
Score = 3871 bits (2096), Expect = 0.0
Identities = 2287/2379 (96%), Gaps = 13/2379 (1%)
Strand=Plus/Plus
Query 331 GGTTGAATTGTTAGTTAA--TAGATGGCGACACTTCAGGATATTGGTGTATCAGCTGGGA 388
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 464 GGTTGAATTTTTAGTTAAGGGAGATGGCGACACTTCAGGATATTGGTGTATCAGCTGGGA 523
Query 389 TAAACATTCTCAGTGCCTTTGTTTTCTTCATAATCTTTGCGGTTTTGAGGCTTCAGCCTT 448
|||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 524 TAAACATTCTCAGTGCATTTGTTTTCTTCATCATCTTTGCTATTTTGAGGCTTCAGCCTT 583
Query 449 TCAATGATAGAGTTTACTTCTCAAAATGGTATCTCAAGGGGTTAAGAAGCAGCCCTGCTC 508
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 584 TCAATGATAGAGTTTACTTCTCAAAATGGTATCTCAAGGGGTTAAGAAGCAGCCCTTCGC 643
Query 509 GTGGTGGCGCCTTTGCGCAGAGGTTTGTGAACCTGGACTTCAGGTCTTATATGAAGTTCT 568
|||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct 644 GTGGTGGCGCCTTTGCGCAGCGCTTTGTGAACCTGGACTTCAGGTCTTATGTGAAGTTCT 703
Query 569 TGAATTGGATGCCAGAGGCTCTGAAGATGCCTGAGCCTGAGCTTATTGATCATGCTGGTT 628
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 704 TGAATTGGATGCCAGAGGCTTTGAAGATGCCTGAGCCTGAGCTGATTGATCATGCTGGTT 763
Query 629 TGGATTCAGTTGTTTATCTCCGGATTTACTGGCTGGGGCTTAAGATCTTTACTCCAATAG 688
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 764 TGGATTCAGTTGTTTATCTCCGGATTTACTGGCTGGGGCTGAAGATCTTTGCTCCAATAG 823
Query 689 CAGTGCTTGCTTGGGCAGTTCTTGTGCCAGTCAACTGGACTAATAACACATTGGAGATGG 748
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 824 CAGTGCTTGCTTGGGCAGTTCTTGTGCCAGTCAACTGGACAAATAACACACTGGAGATGG 883
Query 749 CTAAGCAGTTAAGGAATGTAACTTCGAGCGACATTGACAAACTCTCTGTTTCAAATATTC 808
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 CTAAACAGCTAAGGAATGTAACTTCGAGCGACATTGACAAACTCTCTGTTTCAAATATTC 943
Query 809 CAGAGTATTCAATGAGGTTTTGGACTCATATAGTAATGGCTTATGCCTTTACCATCTGGA 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 CAGAGTATTCAATGAGGTTTTGGACTCATATAGTAATGGCTTATGCCTTTACCATCTGGA 1003
Query 869 CTTGTTATGTGCTGATGAAAGAATATGAGACAATTGCTAACATGAGGCTCCAGTTTGTTG 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 CTTGTTATGTGCTGATGAAAGAATATGAGACAATTGCTAACATGAGGCTCCAGTTTGTTG 1063
Query 929 CATCAGAAGCTCGTCGACCTGACCAGTTCACTGTCCTTGTTAGGAATGTACCTCCGGACG 988
|||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1064 CATCTGAAGCTCGTCGACCTGACCAGTTCACTGTTCTGGTTAGGAATGTACCTCCGGACG 1123
Query 989 CAGATGAATCTGTAAGTGAACTGGTAGAGCATTTTTTCCTGGTCAATCATCCTGATCACT 1048
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1124 CAGATGAATCTGTAAGTGAACTGGTGGAGCATTTTTTCCTGGTCAATCATCCTGATCACT 1183
Query 1049 ACCTAACACATCAGG----T-T-GTATGCAATGCAAACAAGCTGGCCGATTTGGTGAAAA 1102
|||| |||||||||| | | |||||||||||||||||||| ||||||||||||||||
Sbjct 1184 ACCTGACACATCAGGCAAATGTTGTATGCAATGCAAACAAGCTTGCCGATTTGGTGAAAA 1243
Query 1103 AGAAGAAAAAGCTGCAGAATTGGCTTGATTACTACCAGCTCAAATACGCTAGGAATAACT 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1244 AGAAGAAAAAGCTGCAGAATTGGCTTGATTACTACCAGCTCAAATACGCTAGGAAAAACT 1303
Query 1163 CTCAGAGAATTATGGTGAAGCTTGGCTTTCTTGGGCTATGGGGACAAAAAGTCGATGCCA 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 CTCAGAGAATTATGGTGAAGCTTGGCTTTCTTGGGCTATGGGGACAAAAAGTCGATGCCA 1363
Query 1223 TTGAACATTACATTGCTGAAATTGACAAAATATCAAAAGAGATCAGTAAAGAAAGAGAGG 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 TTGAACATTACATTGCTGAAATTGACAAAATATCAAAAGAGATCAGTAAAGAAAGAGAGG 1423
Query 1283 AAGTGGTGAATGATCCTAAGGCCATTATGCCAGCAGCGTTTGTCTCCTTTAAAACACGAT 1342
|||||||||||||||| ||| ||||||||||||| || ||||||||||||||||| ||||
Sbjct 1424 AAGTGGTGAATGATCCCAAGTCCATTATGCCAGCTGCATTTGTCTCCTTTAAAACCCGAT 1483
Query 1343 GGGCTGCTGCGGTTTGTGCTCAGACTCAACAGACCCGAAACCCAACCCAATGGCTGACCG 1402
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1484 GGGCTGCTGCTGTTTGTGCTCAGACTCAACAGACCCGAAACCCAACCCAGTGGCTGACCG 1543
Query 1403 AATGGGCTCCAGAACCGCGTGATGTGTTTTGGTCAAATCTTGCTATTCCATATGTTTCTC 1462
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 AATGGGCTCCAGAACCGCGTGATGTGTTTTGGTCAAATCTTGCTATTCCATATGTTTCTT 1603
Query 1463 TGACAGTAAGGAGGTTGATCATGCATGTTGCCTTCTTCTTCCTAACCTTCTTCTTCATTG 1522
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 TGACAGTAAGGAGGTTAATCATGCATGTTGCCTTCTTCTTCCTAACCTTCTTCTTCATTA 1663
Query 1523 TCCCCATCGCGTTTGTTCAATCTCTTGCTACCATTGAAGGGATTGTGAAAGCTGCTCCGT 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 TCCCCATCGCGTTTGTTCAATCTCTTGCTACCATTGAAGGGATTGTGAAAGCTGCTCCGT 1723
Query 1583 TCTTGAAGTTTATTGTAGATGATAAATTCATGAAATCGGTGATACAAGGTTTCCTTCCGG 1642
||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 1724 TCTTGAAGTTTATTGTAGAGGATAAATTCATGAAATCGGTGATACAAGGTTTTCTACCGG 1783
Query 1643 GTATTGCACTGAAGCTTTTCCTCGCCTTTCTGCCATCCATTTTGATGATCATGTCCAAAT 1702
|||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1784 GTATCGCACTGAAGATTTTCCTCGCCTTTCTGCCATCCATTCTGATGGTCATGTCCAAAT 1843
Query 1703 TTGAAGGCTTCACATCGATCTCATCTTTAGAGAGACGAGCAGCGTTTCGATATTACATCT 1762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1844 TTGAAGGCTTCACATCGATCTCATCTTTAGAGAGACGAGCAGCGTTTCGATATTACATCT 1903
Query 1763 TCAACTTAGTGAACGTCTTTCTTGCTAGCGTTATCGCTGGAGCTGCGTTTGAACAGCTTA 1822
||||||| ||||||||||||||||| || |||||| ||||||||||||| ||||||||||
Sbjct 1904 TCAACTTGGTGAACGTCTTTCTTGCAAGTGTTATCACTGGAGCTGCGTTCGAACAGCTTA 1963
Query 1823 ACTCTTTCCTCAATCAATCCGCAAACCAAATCCCCAAAACCATTGGTGTGGCGATACCGA 1882
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1964 ACTCTTTCCTCAATCAATCCCCAAACCAAATCCCCAAAACCATTGGTGTGGCGATACCGA 2023
Query 1883 TGAAAGCAACTTTCTTCATCACGTATATAATGGTTGATGGTTGGGCAGGAGTTGCAGGAG 1942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2024 TGAAAGCAACTTTCTTCATCACGTATATAATGGTTGATGGTTGGGCAGGAGTTGCAGGAG 2083
Query 1943 AGATTCTAATGCTGAAACCATTGATTATGTTCCATCTCAAAAACGCCTTCTTGGTTAAGA 2002
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2084 AGATTCTAATGCTGAAACCACTGATTATGTTCCATCTCAAAAACGCCTTCTTGGTTAAGA 2143
Query 2003 CTGATAAAGACAGAGAGGAAGCAATGGACCCGGGAAGCATTGGTTTTAACACGGGTGAGC 2062
|||| ||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 2144 CTGAGAAAGACAGAGAAGAAGCAATGGACCCGGGAAGCATCGGTTTTAACACAGGCGAGC 2203
Query 2063 CTCGGATACAGCTCTACTTTCTTCTCGGTCTTGTCTACGCTCCTGTGACACCGATGCTTC 2122
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2204 CTCGGATACAGCTCTACTTTCTTCTCGGTCTTGTCTACGCTCCCGTGACACCGATGCTTC 2263
Query 2123 TTCCTTTTATCTTGGTCTTCTTCGCCCTTGCTTACATTGTATATCGCCACCAAATCATTA 2182
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2264 TTCCTTTTATCTTAGTCTTCTTCGCCCTTGCTTACATTGTGTATCGCCACCAAATCATTA 2323
Query 2183 ACGTATACAATCAAGAATACGAGAGTGCTGCAGCGTTTTGGCCAGACGTTCATGGACGAG 2242
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2324 ACGTATACAACCAAGAATACGAGAGCGCTGCAGCGTTTTGGCCAGACGTTCATGGACGAG 2383
Query 2243 TCATAGCAGCATTGGTAATATCACAGTTGCTTCTGATGGGTCTATTGGGAACAAAGCACG 2302
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2384 TCATAGCGGCATTAATAATATCACAGTTGCTTCTGATGGGTCTATTGGGAACAAAGCACG 2443
Query 2303 CTGCATTAGCTGCACCGTTTCTCATTGCTTTGCCTGTGCTTACCATTGGTTTCCACCACT 2362
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2444 CTGCATTAGCTGCACCTTTTCTCATTGCTTTGCCTGTGCTTACCATCGGTTTCCACCACT 2503
Query 2363 TCTGCAAAGGTCGTTATGAGCCAGCTTTCATCAGATACCCTTTACAGGAAGCTATGATGA 2422
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2504 TCTGCAAAGGTCGTTATGAGCCAGCCTTCATCAGATACCCTTTACAGGAAGCTATGATGA 2563
Query 2423 AAGATACATTAGAAACCGCAAGAGAACCAAACCTGAACCTTAAAGGCTACTTGCAAAATG 2482
|||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2564 AAGATACATTGGAAAGCGCAAGAGAACCAAACCTCAACCTTAAAGGCTACTTGCAAAATG 2623
Query 2483 CTTACGTTCATCCGGTTTTCAAAGGCGATGAAGACGATTATGACATTGATGACAAGCTCG 2542
||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2624 CTTACATTCATCCAGTTTTCAAAGGCGATGAAGACGATGATGACATTGATGACAAGCTCG 2683
Query 2543 GGAAGTTTGAGGATGAAGCCATTATTGTTCCCACCAAACGTCAGTCGAGGAGAAATACTC 2602
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 2684 GGAAGTTTGAGGATGAAGCCATCATTGTTCCCACCAAACGTCAGTCGCGGAGAAATACTC 2743
Query 2603 CGGCTCCTAGCATAATCAGTGGGGACGATTCGCCGTCTTTGCCCTTTAGTGGTAAACTAG 2662
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2744 CGGCTCCTAGCAGAATCAGTGGGGAAGATTCGCCGTCTTTGCCCTTTAGTGGTAAACTAG 2803
Query 2663 TCTA----A-GAGAAGCTTCACTCATGGTCAAAAGAAAG 2696
|||| | ||||||||| |||||| |||||||||||
Sbjct 2804 TCTAGTCTAAGAGAAGCTTTGCTCATGATCAAAAGAAAG 2842
Score = 150 bits (81), Expect = 5e-35
Identities = 117/132 (89%), Gaps = 12/132 (9%)
Strand=Plus/Plus
Query 204 TTTGTGTGTTGCGTGTGTTACTAAATCACTGAAGAGGGTAAAGAGaaaaacaaaacaaaa 263
|||||||||||| |||||||||||||||||| |||||| | |||||| ||||
Sbjct 100 TTTGTGTGTTGC--GTGTTACTAAATCACTGACGAGGGT-----G---CACAAAA-AAAA 148
Query 264 a-GTTCTTAGCTTTGGATGAATCTGGAAGTGATCCAAAACACTGGCTTATTCCACTCCTC 322
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 AGGTTCTTAGCTTTGGATGAATCTGGAAGTGATCCAAAACACTGGCTTATTCCACTCCTC 208
Query 323 TTCTCTAGGGTT 334
|||| |||||||
Sbjct 209 TTCTTTAGGGTT 220
Score = 139 bits (75), Expect = 1e-31
Identities = 91/99 (92%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 61 ACTCTCTTAAATCTTAACCCTTCGTCCGTAACTGCTTCTCTTGTCAGTTTCTATAGCAAC 120
|||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct 1 ACTCTCTTAAATCTTAACCCTTTGTTCGTAACTGCTTCTCTTATCAGTTTCTATAGCAAC 60
Query 121 ATTATCTCAAATAGTTCTATTGATAAATTTTATATCAAA 159
||||||||||| |||||| | ||||||| ||||| ||||
Sbjct 61 ATTATCTCAAACAGTTCTCTAGATAAATATTATAACAAA 99
> Ahg943210 jgi|Araly1|943210|scaffold_603754.1
Length=2359
Score = 2156 bits (1167), Expect = 0.0
Identities = 1926/2293 (84%), Gaps = 49/2293 (2%)
Strand=Plus/Plus
Query 352 ATGGCGACACTTCAGGATATTGGTGTATCAGCTGGGATAAACATTCTCAGTGCCTTTGTT 411
||||| |||||||| || |||||||||||||| ||||||||||| |||| ||| || ||
Sbjct 21 ATGGCAACACTTCAAGACATTGGTGTATCAGCAGGGATAAACATCCTCACTGCATTCATT 80
Query 412 TTCTTCATAATCTTTGCGGTTTTGAGGCTTCAGCCTTTCAATGATAGAGTTTACTTCTCA 471
|||||||| |||||||| |||| || |||||||| ||||| || ||||||||||||||
Sbjct 81 TTCTTCATTATCTTTGCTTTTTTAAGACTTCAGCCATTCAACGACAGAGTTTACTTCTCG 140
Query 472 AAATGGTATCTCAAGGGGTTAAGAAGCAGCCCTGCTCGTGGTGGCGCCTTTGCGCAGAGG 531
|||||||| |||||||||||||||||||||||||| |||| || | || ||| | ||
Sbjct 141 AAATGGTACCTCAAGGGGTTAAGAAGCAGCCCTGCAAGTGGCGGTGGATTCGCGGGGCGG 200
Query 532 TTTGTGAACCTGGACTTCAGGTCTTATATGAAGTTCTTGAATTGGATGCCAGAGGCTCTG 591
|||||||| ||||||| || || || | ||||||||| |||||||||| || |||||
Sbjct 201 TTTGTGAATTTGGACTTGAGATCATACCTCAAGTTCTTGCATTGGATGCCTGAAGCTCTC 260
Query 592 AAGATGCCTGAGCCTGAGCTTATTGATCATGCTGGTTTGGATTCAGTTGTTTATCTCCGG 651
||||||||||||| |||||||||||||||||||||||| || || ||||| |||||||||
Sbjct 261 AAGATGCCTGAGCGTGAGCTTATTGATCATGCTGGTTTAGACTCTGTTGTCTATCTCCGG 320
Query 652 ATTTACTGGCTGGGGCTTAAGATCTTTACTCCAATAGCAGTGCTTGCTTGGGCAGTTCTT 711
||||||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct 321 ATTTACTGGCTCGGGCTTAAGATTTTTGCTCCAATAGCAATGCTTGCTTGGGCAGTTCTT 380
Query 712 GTGCCAGTCAACTGGACTAATAACACA-TTGGAGATGGCTAAGCAGTTAAGGAATGTAAC 770
|| || || || ||||| || ||| | |||||| |||||||||| |||| |||||| ||
Sbjct 381 GTACCGGTTAATTGGACGAACAAC-GAGTTGGAGTTGGCTAAGCATTTAAAGAATGTTAC 439
Query 771 TTCGAGCGACATTGACAAACTCTCTGTTTCAAATATTCCAGAGTATTCA-ATGAGGTTTT 829
||| || || || ||||| || | |||||||||| ||||||| |||| || |||||||
Sbjct 440 TTCAAGTGATATCGACAAGCTAACAATTTCAAATATCCCAGAGTCTTCACAT-AGGTTTT 498
Query 830 GGACTCATATAGTAATGGCTTATGCCTTTACCATCTGGACTTGTTATGTGCTGATGAAAG 889
|| |||| || ||||||||||| ||||| || ||||||||||||||| || ||||||| |
Sbjct 499 GGGCTCACATTGTAATGGCTTACGCCTTCACAATCTGGACTTGTTATATGTTGATGAAGG 558
Query 890 AATATGAGACAATTGCTAACATGAGGCTCCAGTTTGTTGCATCAGAAGCTCGTCGACCTG 949
| ||||||||| ||||||| |||||||| ||||||||||| |||||||| ||||||||||
Sbjct 559 AGTATGAGACAGTTGCTAATATGAGGCTTCAGTTTGTTGCCTCAGAAGCCCGTCGACCTG 618
Query 950 ACCAGTTCACTGTCCTTGTTAGGAATGTACCTCCGGACGCAGATGAATCTGTAAGTGAAC 1009
||||||| ||||| |||||||||||||||||||||||| | || ||| |||| ||||| |
Sbjct 619 ACCAGTTTACTGTTCTTGTTAGGAATGTACCTCCGGACCCCGACGAAACTGTGAGTGAGC 678
Query 1010 TGGTAGAGCATTTTTTCCTGGTCAATCATCCTGATCACTACCTAACACATCAGGTTGTAT 1069
| || |||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||
Sbjct 679 TTGTGGAGCATTTTTTCCTAGTCAATCACCCTGATAACTACCTCACACATCAGGTTGTAT 738
Query 1070 GCAATGCAAACAAGCTGGCCGATTTGGTGA-AAAAGAAGAAAAAGCTGCAGAATTGGCTT 1128
||| ||||||||||| ||||||||||| | ||| ||||| ||||||||||||||||||
Sbjct 739 ACAACGCAAACAAGCTCGCCGATTTGGTTAGTAAA-AAGAAGAAGCTGCAGAATTGGCTT 797
Query 1129 GATTACTACCAGCTCAAATACGCTAGGAATAACTCTCAG---AGAATTATGGTGAAGCTT 1185
|| ||||| |||||||||||| |||| |||||||||||| ||| ||| |||||||
Sbjct 798 GACTACTATCAGCTCAAATACACTAGAAATAACTCTCAGACCAGACCTATTACGAAGCTT 857
Query 1186 GGCTT-TCTTGGGC-TATGGGGACAAAAAGTCGATGCCATTGAACATTACATTGCTGAAA 1243
|| || ||| ||| | || ||||||||||| || || || ||||||||||||||||||
Sbjct 858 GG-TTGCCTT-GGCTTGTGTGGACAAAAAGTTGACGCAATCGAACATTACATTGCTGAAG 915
Query 1244 TTGACAAAATATCAAAAGAGATCAG-TAAAGAAAGAGAGGAA-GTGGTGAATGATCCTAA 1301
|||| |||| |||||||||||| | | |||| || || ||| ||||||||||||| ||
Sbjct 916 TTGATAAAACATCAAAAGAGAT-TGCTGAAGAGAGGGA-GAATGTGGTGAATGATCAAAA 973
Query 1302 GGCCATTATGCCAGCAG-CGTTTGTCTCCTT-TAAAACACGATGGGCTGCTGCGGTTTGT 1359
| | || |||||||| | | ||||||||||| ||||| || ||||||||||| |||||
Sbjct 974 GTCAATCATGCCAGC-GTCTTTTGTCTCCTTCAAAAAC-CGTTGGGCTGCTGCTGTTTGC 1031
Query 1360 GCTCAGACTCA-ACAGACCCGAAACCCAACCCAATGGCTGACCGAATGGGCTCCAGAACC 1418
|||||||| || ||||||||||||||||||| ||||||| |||||||||||| |||| ||
Sbjct 1032 GCTCAGAC-CACACAGACCCGAAACCCAACCGAATGGCTAACCGAATGGGCTGCAGAGCC 1090
Query 1419 GCGTGATGTGTTTTGGTCAAATCTTGCTATTCCATATGTTTCTCTGACAGTAAGGAGGTT 1478
||||||||||| |||| |||| ||||| ||||||||||||||| |||| ||||| | ||
Sbjct 1091 GCGTGATGTGTATTGGCCAAACCTTGCGATTCCATATGTTTCTTTGACTGTAAGAAATTT 1150
Query 1479 GATCATGCATGTTGCCTTCTTCTTCCTAACCTTCTTCTTCATTGTCCCCATCGCGTTTGT 1538
| | ||| |||| |||||||||||||| |||||||| ||||| |||| |||||||||||
Sbjct 1151 GGTTATGAATGTAGCCTTCTTCTTCCTTACCTTCTTTTTCATCATCCCTATCGCGTTTGT 1210
Query 1539 TCAATCTCTTGCTACCATTGAAGGG-ATTGTGAAAGCTGCTCCGTTCTTG-AAGTTTATT 1596
||||||||||||||| ||| |||| |||| ||||| ||| ||||||||| ||| | |||
Sbjct 1211 ACAATCTCTTGCTACCGTTG-AGGGAATTGAGAAAGTTGCGCCGTTCTTGAAAG-TCATT 1268
Query 1597 GTAGATGATAAATTCATGAAATCGGTGATACAAGGTTTCCT-TCCGGGTATTGCACTGAA 1655
| || |||||||| | |||||| ||||||||||| | || || ||||||| |||||
Sbjct 1269 ATCGAAGATAAATTTGTAAAATCGCTGATACAAGGTCTGCTAGCC-GGTATTGTGCTGAA 1327
Query 1656 GCTTTTCCTCGCCTTTCTGCCATCCATTTTGATGATCATGTCCAAATTTGAAGGCTTCAC 1715
|||||||||| |||||||||| ||| |||||| ||||||||||||||||||||| ||
Sbjct 1328 GCTTTTCCTCATCTTTCTGCCAGGCATACTGATGACCATGTCCAAATTTGAAGGCTTTAC 1387
Query 1716 ATCGA-TCTCATCTTTAGAGAGACGAGCAGCGTTTCGATATTACATCTTCAACTTAGTGA 1774
|| | | ||||| ||||| |||||| | |||| | ||||||||||||| ||||||||||
Sbjct 1388 TTC-AGTTTCATCCTTAGAAAGACGATCCGCGTCTAGATATTACATCTTTAACTTAGTGA 1446
Query 1775 ACGTCTTTCTTGCTAGCGTTATCGCTGGAGCTGCGTTTGAACAGCTTAACTCTTTCCTCA 1834
|||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1447 ACGTCTTTCTTGGAAATGTTATCGCTGGAGCTGCGTTTGAGCAGCTTAACTCTTTCCTCA 1506
Query 1835 ATCAATCCG-CAAACCAAATCCCCAAAACCATTGGTGTGGCGATACCGATGAAAGCAACT 1893
|||| | || | || |||||||| || || ||||| ||||||||||||||||||||||
Sbjct 1507 ATCAGT-CGCCTAATCAAATCCCTAAGACAATTGGCATGGCGATACCGATGAAAGCAACC 1565
Query 1894 TTCTTCATCACGTATATAATGGTTGATGGTTGGGCAGGAGTTGCAGGAGAGATTCTAATG 1953
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1566 TTCTTTATCACATATATAATGGTTGATGGTTGGGCAGGAGTTGCAGGAGAGATTCTTATG 1625
Query 1954 CTGAAACCAT-TGATTATGTTCCATCTCAAAAACGC-CTTCTTGGTTAAGACTGATAAAG 2011
| ||||| | | ||||| | ||| ||||||||||| || |||||| || || || ||||
Sbjct 1626 TTAAAACC-TCTCATTATATACCACCTCAAAAACGCACT-CTTGGTGAAAACAGAGAAAG 1683
Query 2012 ACAGAGAGGAAGCAATGGACCCGGGAAGCATTGGTTTTAACACGGGTGAGCCTCGGATAC 2071
||||||||||||||||| ||||||||||||| ||||| ||||| || ||||||| |||||
Sbjct 1684 ACAGAGAGGAAGCAATGAACCCGGGAAGCATCGGTTTCAACACTGGAGAGCCTCAGATAC 1743
Query 2072 AGCTCTACTTTCTTCTCGGTCTTGTCTACGCTCCTGTGACACCGATGCTTCTTCCTTTTA 2131
|||| ||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 1744 AGCTTTACTTCCTTCTCGGTCTTGTCTATGCTCCCGTGACACCAATGCTTCTTCCTTTTA 1803
Query 2132 TCTTGGTCTTCTTCGCCCTTGCTTACATTGTATATCGCCACCAAATCATTAACGTATACA 2191
|||| ||||||| || ||||||||| | ||||||||||| || ||||| || || || |
Sbjct 1804 TCTTAATCTTCTTTGCGCTTGCTTACGTCGTATATCGCCATCAGATCATAAATGTGTATA 1863
Query 2192 ATCAAGAATACGAGAGTGCTGCAGCGTTTTGGCCAGACGTTCATGGACGAGTCATAGCAG 2251
||||||| || ||||| ||||| |||||||||||||| ||||||||||| || ||| | |
Sbjct 1864 ATCAAGAGTATGAGAGCGCTGCTGCGTTTTGGCCAGATGTTCATGGACGGGTTATAACGG 1923
Query 2252 CATTGGTAATATCACAGTTGCTTCTGATGGGTCT-ATTGGGAACAAAGCACGCTGCATTA 2310
||||| | ||||| |||||||||||||||||| | || || | |||| || || || |||
Sbjct 1924 CATTGATCATATCTCAGTTGCTTCTGATGGGTTTGATAGGTA-CAAAACATGCCGCTTTA 1982
Query 2311 GCTGCACCGTTTCTCATTGCT-TTGCCTGTGCTTACCATTGGTTTCCACCACTTCTGCAA 2369
||||||||||||||||| ||| || || ||| ||||||| ||||||||| |||||| ||
Sbjct 1983 GCTGCACCGTTTCTCATCGCTCTTCCC-GTGATTACCATCAGTTTCCACCGCTTCTGTAA 2041
Query 2370 AGGTCGTTATGAGCCAGC-TTTCATCAGATACCCTTTACAGGAAGCTATGATGAAAGATA 2428
||| |||||||| || || ||| ||| ||||||| |||||||||||||||||||||||||
Sbjct 2042 AGGCCGTTATGAACCCGCCTTT-ATCCGATACCCCTTACAGGAAGCTATGATGAAAGATA 2100
Query 2429 CATTAGAAACCGCAAGAGAACCAAACCTGAACCTTAAAGGCTACTTGCAAAATGCTTACG 2488
|||| |||| |||||||| || || |||||||| ||||| ||||||||| | |||||
Sbjct 2101 CATTGGAAAGAGCAAGAGAGCCTAATCTGAACCTGAAAGGTTACTTGCAAGACGCTTATA 2160
Query 2489 TTCATCCGGTTTTCAAAGGCGATGAAGACGATTATGACATTGATGACAAGCTCGGGAAGT 2548
||||||| ||||||||||||| ||| ||||| ||| | ||||| | | || || |
Sbjct 2161 TTCATCCTGTTTTCAAAGGCGGTGATGACGAC---GACG--G-TGACATGATTGGAAAAT 2214
Query 2549 TTGAGGATGAAGCCATTATTGTTCCCACCAAACGTCAGTCGAGGAGAAATACTCCGGCTC 2608
| ||| |||||| ||| || || || || ||||| || ||| |||| || ||||| || |
Sbjct 2215 TGGAGAATGAAGTCATCATAGTGCCAACAAAACGCCAATCGCGGAGGAACACTCCCGCGC 2274
Query 2609 CTAGCATAATCAG 2621
| ||| ||||||
Sbjct 2275 CAAGCCGAATCAG 2287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106386054285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5