BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22140.1
Length=1015
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329405 jgi|Araly1|329405|fgenesh1_pm.C_scaffold_7001632 1219 0.0
Ahg327388 jgi|Araly1|327388|fgenesh1_pm.C_scaffold_6002608 617 4e-176
> Ahg329405 jgi|Araly1|329405|fgenesh1_pm.C_scaffold_7001632
Length=753
Score = 1219 bits (660), Expect = 0.0
Identities = 711/736 (97%), Gaps = 2/736 (0%)
Strand=Plus/Plus
Query 280 ATGGCGAAAACTCGACCTGGTGTCGCCTCCAAAATTAAGACGGGAAGGAAGGAGCTGGAC 339
||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 1 ATGGCGAAAACTCGACCTGGTGTCGCCTCCAAAATTAAGCCTGGTAGGAAGGAGCTGGAC 60
Query 340 TCTTATACCATCAAGGGCACCAACAAAGTTGTGAGAGCGGGAGATTGTGTGTTGATGCGC 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTATACCATCAAGGGCACCAACAAAGTTGTGAGAGCGGGAGATTGTGTGTTGATGCGC 120
Query 400 CCATCAGATGCTGGTAAACCACCATATGTGGCCCGTGTTGAGAAGATTGAAGCTGATGCG 459
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCATCAGATGCTGGTAAACCACCATATGTGGCCCGTGTTGAGAAGATTGAAGCTGATGCT 180
Query 460 AGGAACAATGTGAAGGTGCACTGTCGATGGTATTACCGCCCTGAGGAGTCACTTGGTGGT 519
|| |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 181 AGAAACAATGTGAAGGTGCACTGCCGATGGTATTACCGTCCTGAGGAGTCCCTTGGTGGT 240
Query 520 AGGAGACAATTTCATGGAGCCAAAGAGCTTTTCTTGTCTGACCATTTTGATGTTCAAAGT 579
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 AGGAGACAATTTCATGGAGCCAAAGAGCTTTTCCTGTCTGACCATTTTGATGTTCAAAGC 300
Query 580 GCACACACCATTGAGGGAAAATGCATTGTTCACACCTTCAAAAACTACACGAGGCTTGAA 639
||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||
Sbjct 301 GCACACACCATTGAGGGGAAATGCATCGTTCACACCTTCAAGAACTACACAAGGCTTGAA 360
Query 640 AACGTTGGGGCAGAGGATTATTATTGTAGATTCGAGTACAAGGCTGCTACTGGCGCATTT 699
||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 361 AACGTCGGGGCGGAGGATTATTATTGTAGATTTGAGTACAAGGCTGCTACTGGCGCGTTT 420
Query 700 ACCCCTGATCGAGTTGCTGTGTACTGCAAATGTGAAATGCCTTACAATCCAGACGATCTC 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACCCCTGATCGAGTTGCTGTGTACTGCAAATGTGAAATGCCTTACAATCCAGACGATCTC 480
Query 760 ATGGTGCAGTGTGAAGGCTGCAAAGACTGGTATCATCCTGCGTGTGTTGGCATGACGATT 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGGTGCAGTGTGAAGGCTGCAAAGACTGGTATCATCCTGCGTGTGTTGGCATGACGATT 540
Query 820 GAAGAAGCAAAGAAGCTTGATCACTTTGTATGTGCTGAATGCAGTTCTGATGACGATGTC 879
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAAGAAGCAAAGAAGCTTGATCACTTTGTATGTGCTGAATGCAGTTCTGATGACGATGTA 600
Query 880 AAAAAATCGCAGAATGGGTTTACTTCATCTCCAGCTGATGATGTTAAGGTCCGTTTGTCT 939
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 601 AAAAAATCGCAGAACGGGTTTACTTCATCTCCAGCTGATGATGTTAAGGTCCGTTGGTCT 660
Query 940 CTCTTTAGTCATCTCCTATATAGATGTTCTATCACTTATTTATAACTTTAGTCTCTGCCC 999
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 661 TTCTTTAGTCATCTCCTATATAGATGTTCTATCACTT-TG-ATAACTTTAGTCTCTGCCC 718
Query 1000 CTCTGTGTGCACCTGT 1015
||||||||||||||||
Sbjct 719 CTCTGTGTGCACCTGT 734
> Ahg327388 jgi|Araly1|327388|fgenesh1_pm.C_scaffold_6002608
Length=693
Score = 617 bits (334), Expect = 4e-176
Identities = 484/557 (87%), Gaps = 7/557 (1%)
Strand=Plus/Plus
Query 378 GGGAGATTGTGTGTTGATGCGCCCATCAGATGCTGGTAAACCACCATATGTGGCCCGTGT 437
||| ||||||||||| ||||| ||||| ||||||||||| | || || ||||| |||||
Sbjct 114 GGGTGATTGTGTGTTAATGCGTCCATCGGATGCTGGTAAGGCTCCTTACGTGGCGCGTGT 173
Query 438 TGAGAAGATTGAAGCTGATGCGAGGAACAATGTGAAGGTGCACTGTCGATGGTATTACCG 497
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 174 TGAGAAGATTGAAGCAGATGCAAGGAACAATGTGAAGGTGCATTGTCGATGGTATTACCG 233
Query 498 CCCTGAGGAGTCACTTGGTGGTAGGAGACAATTTCATGGAGCCAAAGAGCTTTTCTTGTC 557
||||| || |||||||| || |||||||| || |||||||| |||||||| ||||||||
Sbjct 234 TCCTGAAGAATCACTTGGGGGAAGGAGACAGTTCCATGGAGCTAAAGAGCTCTTCTTGTC 293
Query 558 TGACCATTTTGATGTTCAAAGTGCACACACCATTG-AGGGAAAATGCATTGTTCACACCT 616
||| || | |||||||||||||||||||| |||| |||| ||||| || ||||| ||||
Sbjct 294 TGATCACTACGATGTTCAAAGTGCACACACTATTGAAGGG-AAATGTATCGTTCATACCT 352
Query 617 TCAAAAACTACACGAGGCTTGAAAACGTTGGGGCAGAGGATTATTATTGTAGATTCGAGT 676
| ||||||||||| ||||||||||| ||||| | || ||||||||||||||||||||||
Sbjct 353 TTAAAAACTACACAAGGCTTGAAAATGTTGGAGTGGAAGATTATTATTGTAGATTCGAGT 412
Query 677 ACAAGGCTGCTACTGGCGCATTTAC-CCCTGATCGAGTTGCTGTGTACTGCAAATGTGAA 735
| ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct 413 ATAAGGCTGCTACTGGCGCGTTTACTCCC-GATCGAGTTGCTGTGTACTGCAAATGTGAA 471
Query 736 ATGCCTTACAATCCAGACGATCTCATGGTGCAGTGTGAAGGCTGCAAAGACTGGTATCAT 795
||||| || || ||||| ||||| |||||||| |||||||||||||| |||||||||||
Sbjct 472 ATGCCGTATAACCCAGATGATCTGATGGTGCAATGTGAAGGCTGCAAGGACTGGTATCAC 531
Query 796 CCTGCGTGTGTTGGCATGACGATTGAAGAAGCAAAGAAGCTTGATCACTTTGTATGTGCT 855
|| |||||||| |||||||||||||||||||| |||||||| || ||||||||||||| |
Sbjct 532 CCAGCGTGTGTAGGCATGACGATTGAAGAAGCCAAGAAGCTGGAACACTTTGTATGTGTT 591
Query 856 GAATGCAGTTCTGATGACGATG---TCAAAAAATCGCAGAATGGGTTTACTTCATCTCCA 912
|||||||| ||||| || |||| |||||| ||| ||||| || ||| ||||||| |||
Sbjct 592 GAATGCAGCTCTGACGAAGATGGAGTCAAAAGATCTCAGAACGGATTTGCTTCATCGCCA 651
Query 913 GCTGATGATGTTAAGGT 929
| ||||| |||||||
Sbjct 652 ACCAATGATCTTAAGGT 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37741687830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5