BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22150.1
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492650 jgi|Araly1|492650|fgenesh2_kg.7__2083__AT4G22150.1 1434 0.0
Ahg490080 jgi|Araly1|490080|fgenesh2_kg.6__3214__AT4G04210.1 527 9e-149
> Ahg492650 jgi|Araly1|492650|fgenesh2_kg.7__2083__AT4G22150.1
Length=1039
Score = 1434 bits (776), Expect = 0.0
Identities = 874/921 (95%), Gaps = 8/921 (1%)
Strand=Plus/Plus
Query 292 GAGATATGTCGTCTAAGGACAAGAAACTATCGAAGCCAACAAGTGGTCGTACTGGTGGTA 351
||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct 123 GAGATATGTCGTCTAAGGACAAGAAACCGGCGAAGCCAACGAGTGGTCGGACTGGTGGTA 182
Query 352 TCCGTACACTTTCCGATCTGAACCGAAGATCAGAACCTGATTCCGATAGTGACTCCGATG 411
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 183 TCCGTACACTTTCCGATCTGAACCGAAGATCAGAGCCTGATTCCGATAGTGACTCCGATG 242
Query 412 GACCTCAAGAATACTTCACCGGTGGCGAAAAAAGTGGTATGCTTGTTCAAGATCCTACAA 471
|||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 243 GACCTCAAGAGTACTACACCGGTGGCGAAAAAAGTGGTATGCTTGTTCAGGATCCTACAA 302
Query 472 AAGAACCAAAACACGATGATGTTGATGAGATATTTAATCAAGCAAGACAGCTAGGAGCTG 531
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 303 AAGAACCAAAACACGATGATGTTGATGAGATATTTAATCAAGCAAGACAACTAGGAGCTG 362
Query 532 TGGAAGGACCTCTTGAGCATCCTTCGAGTTCTAGAAGCTTTACAGGAACAGGAAGATTGC 591
| |||||||||||||||| |||||| ||||| ||||||||||| ||||| || |||||||
Sbjct 363 TAGAAGGACCTCTTGAGCGTCCTTCAAGTTCCAGAAGCTTTACTGGAACCGGGAGATTGC 422
Query 592 TTTCTGGAGAAAGTGTGCCAACGGCTCTTCAACAGCCTGAGCCTGTGATTCACAATATTA 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TTTCTGGAGAAAGTGTGCCAACGGCTCTTCAACAGCCTGAGCCTGTGATTCACAATATTA 482
Query 652 TTTTCTGGTCTAATGGATTCACTGTAGATGATGGACCTTTGAGGAAGTTGGATGATCCAG 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TTTTCTGGTCTAATGGATTCACTGTAGATGATGGACCTTTGAGGAAGTTGGATGATCCAG 542
Query 712 AGAATGCTTCTTTTCTTGATAGCATTCGAAAGTCTGAATGTCCGAAAGAGCTTGAGCCTG 771
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 543 AGAATGCATCTTTTCTTGATAGCATTCGAAAGTCTGAATGCCCGAAAGAGCTTGAGCCTG 602
Query 772 TTGATAAAAGAGCTCCTGTACATGTTAATCTTATGAGAAGAGATGAGAAGTGCCCTGAGA 831
|||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 603 CTGATAAGAGAGCTCCGGTACATGTCAATCTTATGAGAAGAGATGAGAAATGCCCTGAGA 662
Query 832 AAGA-AAAGCTTAAGGTTTCATTTCAAGGAGTTGGAAGGACTCTAGGTGGTGCAAGCTCA 890
|||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 663 AAGAGAAA-CTTAAGGTTGCATTTCAAGGAGTTGGAAGGACTCTAGGTGGTGCAAGCTCA 721
Query 891 TCAACAGCTTCAAGCCAA-AGTAACCTAACTGATGTAGCAGCGGTT-CAATCACCGTTAC 948
||| |||||||||||| | | |||||||||||||||||||||||| || ||||||| ||
Sbjct 722 TCAGCAGCTTCAAGCCTAGAC-AACCTAACTGATGTAGCAGCGGTTTCA-TCACCGTCAC 779
Query 949 AGAGCCTTGTAGTAGATGAAACTCTTCCATCCACATCGATCCAGCTTAGACTCGCGGATG 1008
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 780 AGAGCCTTGTTGTAGATGAAACTCTTCCATCCACATCGATCCAGCTTAGACTCGCGGACG 839
Query 1009 GGACACGCATGGTAGCAAAGTTCAACAACCATCACACGGTTAACGACATTCGTGGTTTCA 1068
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 840 GGACACGCATGGTAGCTAAGTTCAACAACCATCACACGGTCAACGACATTCGTGGTTTCA 899
Query 1069 TTGAGTTTTCTCGACCAGGGAATCCAAACAACTATACCCTTCAGGTCATGGGGTTCCCAC 1128
| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 900 TCGAGTTTTCTCGACCAGGGAATCCAATGAACTACACCCTTCAGGTCATGGGGTTCCCAC 959
Query 1129 CAAAGCCACTTACTGACCCTTCTCAGACCATTGAACAAGCCGGTCTAGC-AAGTTCTGTA 1187
|||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||
Sbjct 960 CAAAGCCACTTACTGACCCTTCTCAGACCATTGATCAAGCCGGTCTCGCGAA-TTCTGTA 1018
Query 1188 GTCATTCAGAAATTCTAGAAA 1208
|||||||||||||||||||||
Sbjct 1019 GTCATTCAGAAATTCTAGAAA 1039
Score = 156 bits (84), Expect = 5e-37
Identities = 94/99 (95%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 99 TTAATGCTAGTTTTGTTTCTGGCTAAGCACACGCGCATAAGAGAACACGCTTTAGAATTA 158
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTAATGTTAGTTTTGTTTCTGGCTAAGCACACGCGCATAAGAGAACACGCTTTAGAATTA 60
Query 159 ACAAGGAGTGTATTACACGCGCTTGGTTTTCGCGTAAAA 197
|| ||||||| |||||||||||| ||||||||||||||
Sbjct 61 ACTAGGAGTGGGTTACACGCGCTTAGTTTTCGCGTAAAA 99
> Ahg490080 jgi|Araly1|490080|fgenesh2_kg.6__3214__AT4G04210.1
Length=1055
Score = 527 bits (285), Expect = 9e-149
Identities = 502/603 (83%), Gaps = 30/603 (5%)
Strand=Plus/Plus
Query 292 GAGATATGTCGTCTAAGGACAAGAAACTATCGAAG-CCAACAAGTGGTCGTACTGGTGGT 350
|||| ||||| || || |||||||||| || || ||| | | | |||| ||||||
Sbjct 7 GAGA-ATGTCTTCGAAAGACAAGAAACCGGCG-AGACCATCGACTAGTCG---TGGTGG- 60
Query 351 A-TCCGTACACTTTCCGATCTGAACCGAAGATCAGAACCTGATTCCGATAGTGACTCCGA 409
| |||| || ||||||||||| || || || || | || |||||||| ||||| |||||
Sbjct 61 AGTCCGAACTCTTTCCGATCTTAATCGTAGGTCTGGTCCAGATTCCGACAGTGATTCCGA 120
Query 410 TGGACCTCAAGAATACTTCACCGGTGGCGAAAAAAGTGGTATGCTTGTTCAAGATCCTAC 469
||||||||||||||||| |||||| || |||| |||||||||||||||||||||| | |
Sbjct 121 TGGACCTCAAGAATACTACACCGGCGGTGAAAGAAGTGGTATGCTTGTTCAAGAT-C--C 177
Query 470 AAAAGAACCAAAACACGATGATGTTGATGAGATATTTAATCAAGCAAGACAGCTAGGAGC 529
| | | |||| | ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 178 -ATCG-A--AAAA-A-GATGATGTTGATGAGATATTTAATCAAGCTAGACAATTAGGAGC 231
Query 530 TGTGGAAGGACCTCTTGAGCATCCTTCGAGTTCTAGAAGCTTT-ACAGGAACAGGAAGAT 588
|||||||||||||||||||| |||||||||||| || || ||| || ||||| || ||||
Sbjct 232 TGTGGAAGGACCTCTTGAGCCTCCTTCGAGTTCAAGGAG-TTTCACTGGAACTGGGAGAT 290
Query 589 TGCTTTCTGGAGAAAGTGTGCCAAC-GGCTCTTCAACAGCCTGAGCCTGTGATTCACAAT 647
||| ||||| |||| | || | || || |||||||||||||||||||||| |||||||
Sbjct 291 CGCTCTCTGGTGAAAATATGTCTACTGG-TCTTCAACAGCCTGAGCCTGTGGTTCACAAC 349
Query 648 ATTATTTTCTGGTCTAATGGATTCACTGTAGATGATGGACCTTTGAGGAAGTTGGATGAT 707
||| ||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||
Sbjct 350 ATTGTTTTCTGGTCTAATGGATTCACTATAGATGATGGTCCTTTGAGGAAATTGGATGAT 409
Query 708 CCAGAGAATGC-TTCTTTTCTTGATAGCATTCGAAAGTCTGAATGTCCGAAAGAGCTTGA 766
|| |||||||| || ||| || || ||||||||||||||||| || ||||||||||||||
Sbjct 410 CCTGAGAATGCATTGTTT-CTCGAGAGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGA 468
Query 767 GCCTGTTGATAAAAGAGCTCCTGTACATGTTAATCTT-ATGAGAAGAGATGAGAAGTGCC 825
||||| ||||||||||| || || ||||| ||| || ||| |||| || ||||| ||||
Sbjct 469 GCCTGCAGATAAAAGAGCCCCGGTTCATGTCAAT-TTGATGCGAAGGGAAGAGAAATGCC 527
Query 826 CTGAGA-A-AGAAAAGCTTAAGGTTTCATTTCAAGGAGTTGGAAGGACTCTAGGTGGT-G 882
|||| | | ||||| | | | ||||||||||||||| |||||||| |||||||||||| |
Sbjct 528 CTGAAAGACAGAAACG-T-AGGGTTTCATTTCAAGGTGTTGGAAGAACTCTAGGTGGTAG 585
Query 883 CAA 885
|||
Sbjct 586 CAA 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50093512938
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5