BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G22160.2

Length=698
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492649 jgi|Araly1|492649|fgenesh2_kg.7__2082__AT4G22160.1         560    4e-159


> Ahg492649 jgi|Araly1|492649|fgenesh2_kg.7__2082__AT4G22160.1
Length=608

 Score =  560 bits (303),  Expect = 4e-159
 Identities = 395/437 (90%), Gaps = 15/437 (3%)
 Strand=Plus/Plus

Query  60   ATGGGCAAGTCGGCAAGACTTCGCCGGAGCCAGACCTCATCG-C----------CGGA--  106
            |||||||||||||||||| ||||||||||||||||||||||| |          | ||  
Sbjct  1    ATGGGCAAGTCGGCAAGATTTCGCCGGAGCCAGACCTCATCGTCGGAGAATAATCCGACC  60

Query  107  GA--ATGTCTTGTTGGGTAAAGATAGCTCCGATGATCCTTACAGATCCGACTCAGAGACT  164
            ||  ||||||||  |||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct  61   GACGATGTCTTGACGGGTAAAGATAGCTCCGACGATCCTTACAGCTCCGACTCAGACACT  120

Query  165  GAATCAAACTCGAGCTCCGGGACCGAGTCGAACATGAGCTCTGACTCTACAACTTCGGCA  224
            || ||||||| |||||||||||||||||| |||||||||| ||||||  |||||||| | 
Sbjct  121  GAGTCAAACTTGAGCTCCGGGACCGAGTCAAACATGAGCTGTGACTCGGCAACTTCGACG  180

Query  225  GGAGTGTCGGCGATGATACGAGTCTTGTCTGATTCTCTGCTTCGAACGGAACTCGCGGAG  284
            ||| |||||||||| |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct  181  GGACTGTCGGCGATCATACGAGTCTTGTCTGATTCTCTGCTTCGAACGGAATTAGCGGAG  240

Query  285  ATGGAGATGATCAAGGCTCGTGAAGCAGCGAGGTTGGAAGCTGAGAAGAGAAGGTTGGAA  344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ATGGAGATGATCAAGGCTCGTGAAGCAGCGAGGTTGGAAGCTGAGAAGAGAAGGTTGGAA  300

Query  345  ATGGAAGTCGACTTGACTCAGATGGTGCTTCAGACTCATTTGCAAGCGATGTCGTCGTTA  404
            |||||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||
Sbjct  301  ATGGAAGTCGACTTGACTCAGATGATGCTTCAGACTCATTTGCAAGCTACGACGTCGTTA  360

Query  405  CCCGTCGGAGAACATAAGATTTATCAGGCACAGAGGAAGAGGAAGAGATCAGACGTTGAA  464
              |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct  361  TTCGTCGGAGAACATAAGATTTCTCCGGCACAGAGGAAGAGGAAGAGATCAGACGTTGAA  420

Query  465  GAACTCGAGTCCTCTAC  481
            |||||||||||||||||
Sbjct  421  GAACTCGAGTCCTCTAC  437



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25656723141


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5