BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22165.1
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354506 jgi|Araly1|354506|fgenesh1_pg.C_scaffold_7001679 483 2e-135
Ahg492647 jgi|Araly1|492647|fgenesh2_kg.7__2080__AT4G22180.1 457 9e-128
Ahg945916 jgi|Araly1|945916|scaffold_702145.1 438 3e-122
Ahg889961 jgi|Araly1|889961|Al_scaffold_0007_1947 303 1e-81
Ahg337411 jgi|Araly1|337411|fgenesh1_pg.C_scaffold_1003976 224 1e-57
> Ahg354506 jgi|Araly1|354506|fgenesh1_pg.C_scaffold_7001679
Length=1296
Score = 483 bits (261), Expect = 2e-135
Identities = 582/727 (80%), Gaps = 61/727 (8%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAACCATAACCCTAATACATGGTCGGAGCTTCCTCTAGATCTCTTGAACTTA 60
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGAACCAAAACCCTAATACCTGGTCGGAGCTTCCTCTAGATCTCTTGAACTTA 60
Query 61 GTTTTCAAACGCCTCAGCTTAGTTAATTTCCAACGAGCTAAATCCGTATGCTCCACTCGG 120
||||||||||||||||| || | |||||| | |||||| ||||| || || || || ||
Sbjct 61 GTTTTCAAACGCCTCAGTTTTGCTAATTTTCGACGAGCGAAATCGGTGTGTTCGTCTTGG 120
Query 121 TACTCTGTTTCGAGACAATGCGTGCCCGAACGTCAGATCGCTTTGCTGATTCTCTTCCCC 180
||||||| ||||| ||||||||||||| || ||||||| ||| |||||| |||||||||
Sbjct 121 TACTCTGCTTCGAAACAATGCGTGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTCCCC 180
Query 181 AAAGA-AGACAACACCGATAACA-GTACTTGTAAGTTGTTCAATCCCGACGAAAAAGACA 238
||||| | | |||| | || || | || || || ||||||||||| || |||||
Sbjct 181 AAAGACAAA-AACAGCAATT-CATGCAC--GT---TT-TTCAATCCCGAGGACAAAGATT 232
Query 239 AACTT-TACAAGATGCAAGATCTTGGTGTGGAATTTGCAAAGAGTGTTTGTAGGGCAACT 297
|| ||||| | |||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 233 TT-TTATACAAAACGCAAGATCTTGGTGTGGAATTTGCCAAGAGTGTTTGTATAGCAACC 291
Query 298 TATGGAAGTTGGCTCCTGATGCAAGATTCAAAGTATCATCTATACATTTTGAATATATTC 357
|| ||||||||||| || |||||||||||||||||| || |||||||||||||| ||||
Sbjct 292 TACGGAAGTTGGCTTCTTATGCAAGATTCAAAGTATAATTTATACATTTTGAATCCATTC 351
Query 358 ACTCGCAAGAG-G-ATCAATCTTCCTCCTGTGGAGTCACAACT---TGGCATGGTAAAGA 412
|| | ||||| | ||| ||||||| ||||||| ||||||| || ||||||||||
Sbjct 352 AC-CA-AAGAGAGTATCGATCTTCCGGCTGTGGAATCACAACAACCTGCCATGGTAAAGG 409
Query 413 TTGAACGAACCATATATGATTGGTTT---CACTTTT--C-A-CACGGTCAC-TATA-GCT 463
|||||||||||||| ||||| | ||| |||||| | | ||| ||| | || | |
Sbjct 410 TTGAACGAACCATAGATGAT-GATTTTATCACTTTCGGCGATCACAACCACGT-TAAGTT 467
Query 464 -TTTC--GCTAA-------GT---T-CCCCTGTGTTTTGGATTGACGAGGAATCCAAAGA 509
||| | ||| || | ||||||||||||||||||||||| || |||||||
Sbjct 468 ATTTAAAGGTAATAATACCGTACGTACCCCTGTGTTTTGGATTGACGAGAAAACCAAAGA 527
Query 510 TTATATAGTTATGTGGGGACTTGGAGT-TTATTGTGTGGTTTATGCCAAGAAAGGAGATA 568
||| |||| | ||||||| |||||| | || |||||||||||||| |||||||||||||
Sbjct 528 TTACATAGCTCTGTGGGGGCTTGGA-TATTGGTGTGTGGTTTATGCGAAGAAAGGAGATA 586
Query 569 CCTCGTGGAATCAAATCCCCCAAACTTCATATT---TT-TAT-GACATGGTTTACAAGGA 623
| |||||||||||| || ||| || || || || | | |||||||||||||||||
Sbjct 587 AGTTGTGGAATCAAATTCCAGAAA-TT-ATTTTAGATTCTCTTGACATGGTTTACAAGGA 644
Query 624 TCACAAGCTTTACTTC-TTAAGCAGTACTG-GTA-CTTTCCA-AATCTTAGATTTTTCTG 679
|||||||||||||| | || ||| ||| | | | |||| || |||||||||||||||||
Sbjct 645 TCACAAGCTTTACT-CATTTAGC--TACAGAG-AGCTTTTCACAATCTTAGATTTTTCTG 700
Query 680 AAGAGAT 686
||||||
Sbjct 701 GAGAGAT 707
Score = 111 bits (60), Expect = 8e-24
Identities = 74/81 (91%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 844 GATTCTTTGGGTGATGAGGCATTGCTTTTGGATCTAGGCATCACTGTGCTCGCCAGTGAC 903
||||||||||| || |||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 940 GATTCTTTGGGCGACGAGGCAATGCTTTTGGATCTAGGCATCACTGTGCTCGCCAATGAA 999
Query 904 GTTGAGGGATTCAAAAGAAAT 924
||||||||| |||| ||||||
Sbjct 1000 GTTGAGGGACTCAATAGAAAT 1020
> Ahg492647 jgi|Araly1|492647|fgenesh2_kg.7__2080__AT4G22180.1
Length=1197
Score = 457 bits (247), Expect = 9e-128
Identities = 523/652 (80%), Gaps = 35/652 (5%)
Strand=Plus/Plus
Query 14 ATA-ACCCTAATACATGGTCGGAGCTTCCTCTAGATCTCTTGAACTT-AGTT-TTCAAAC 70
||| |||| ||| | |||||||||||||||||||||||||||| ||| | || ||| |||
Sbjct 47 ATACACCC-AATTCCTGGTCGGAGCTTCCTCTAGATCTCTTGA-CTTCA-TTGTTCGAAC 103
Query 71 GCCTCAGCTTAGTTAATTTCCAACGAGCTAAATCCGTATGCTCCACTCGGTACTCTGTTT 130
|||||||||| | |||||||||||||||||||||||| || || || || |||| | |
Sbjct 104 GCCTCAGCTTTGCTAATTTCCAACGAGCTAAATCCGTCTGTTCGTCTTGGCACTCCGCAT 163
Query 131 CGAGACAATGCGTGCCCGA-ACGTCAGATCGCTTTGCTGATTCTCTTCCCCAAAGAAGAC 189
|| |||||| ||| ||| | || ||||| ||| ||| ||||||||||| ||||||||
Sbjct 164 CGCGACAATCCGTTCCC-ATAC---AGATCCCTTGGCTAATTCTCTTCCCGGAAGAAGAC 219
Query 190 AACACCGATAACAGTACTTGTAAGTTGTTCAATCCCGACGAAAAAGACAAACTTTACAAG 249
|||| | | |||| | | || | ||||||||||||||| ||||||| |||| |||||||
Sbjct 220 AACAACAACAACAATTCATGCACGTTGTTCAATCCCGAGGAAAAAGGCAAAGTTTACAAA 279
Query 250 ATGCAAGATCTTGGTGTGGAATTTGCAAAGAGTGTTTGTAGGGCAACTTATGGAAGTTGG 309
| | ||||||||||||| |||||||||||||||||||||| ||||| || ||||| |||
Sbjct 280 ACGAAAGATCTTGGTGTTGAATTTGCAAAGAGTGTTTGTACTGCAACCTACGGAAGCTGG 339
Query 310 CTCCTGATGCAAGATTCAAAGTATCATCTATACATTTTGAATATATTCACTCGCAAGAGG 369
||||| |||| |||| || |||| |||| || ||| ||||| ||||||| ||| |||||
Sbjct 340 CTCCTTATGCGAGATCCACCGTATAATCTCTATATTCTGAATCTATTCACCCGCGAGAGG 399
Query 370 ATCAATCTTCCTCCTGTGGAGTCACAACTTGGCATGGTAAAGATTGAACGAACCATATAT 429
|||||||| |||||| | |||||||||||||| ||| |||||| || ||||||||| ||
Sbjct 400 ATCAATCTACCTCCTTTTGAGTCACAACTTGGGATGACAAAGATCGAGCGAACCATAGAT 459
Query 430 GATTGGTTTCACTTTTCACACGGT--CA-C--TAT--AG--CT-------T-TTCGC-TA 471
||| ||||| | |||||| | | || | || || | | || | ||
Sbjct 460 GATCAGTTTCGCATTTCACCCCATTACAACGGTAGGGAGTACCACAAACGTATTAGAATA 519
Query 472 -AGTTCCCCTGTGTTTTGGATTGACGAGGAATCCAAAGATTATATAGTTATGTGGGGACT 530
| | |||||||||||||||| |||||| || |||||||||| ||||||| ||||||||
Sbjct 520 CAAT-CCCCTGTGTTTTGGATCGACGAGAAAACCAAAGATTACGTAGTTATATGGGGACT 578
Query 531 TGGA-GTTTATTGTGTGGTTTATGCCAAGAAAGGAGATACCTCGT-GGAATCAAATCCCC 588
|||| |||| | ||||||||||| ||||||||||||||| | || |||||||||| ||
Sbjct 579 TGGAAGTTTGT-GTGTGGTTTATTCCAAGAAAGGAGATAAAT-GTTGGAATCAAATTCCA 636
Query 589 CAAACTTCATATTTTTATGACATGGTTTACAAGGATCACAAGCTTTACTTCT 640
||| |||| ||| | || ||||||||||||||||||||||||||||| |||
Sbjct 637 GAAAGTTCACATTGTCATCACATGGTTTACAAGGATCACAAGCTTTACCTCT 688
> Ahg945916 jgi|Araly1|945916|scaffold_702145.1
Length=1249
Score = 438 bits (237), Expect = 3e-122
Identities = 528/661 (80%), Gaps = 50/661 (8%)
Strand=Plus/Plus
Query 14 ATA-ACCCTAATACATGGTCGGAGCTTCCTCTAGATCTCTTGAACTT-AGTTTTCAAACG 71
||| |||| ||| | |||||||||||||||||||||||||||| ||| ||| ||| ||||
Sbjct 67 ATACACCC-AATTCCTGGTCGGAGCTTCCTCTAGATCTCTTGA-CTTCAGTGTTCGAACG 124
Query 72 CCTCAGCTTAGTTAATTTCCAACGAGCTAAATCCGTATGCTCCACTC-GGTACTCTGTTT 130
||||||||| | ||||||||| |||||||||| ||| || || | | || |||| | ||
Sbjct 125 CCTCAGCTTTGCTAATTTCCATCGAGCTAAATTCGTCTGTTC-ATTTTGGCACTCCGCTT 183
Query 131 CGAGACAA-TGCGTGCCCGAACGTCAGATC-GCTTTGCTGATTCTCTTCCCCAAAGA-A- 186
|||||||| | | | ||| ||| ||| | | || ||||||||||||||||| ||| |
Sbjct 184 CGAGACAAAT-CATCCCCAAAC---AGACCAG-TTGGCTGATTCTCTTCCCCAGAGACAA 238
Query 187 -GACAACACCGATAACAGTACTTGTAAGTTGTTCAATCCCGACGAAAAAGACAAACTTTA 245
||||||| ||||| | | || | ||||||||||||||| || ||| ||||||||||
Sbjct 239 TGACAACA---ATAAC--T-CATGCACGTTGTTCAATCCCGAGGAGAAACACAAACTTTA 292
Query 246 CAAGATGCAAGATCTTGGTGTGGAATTTGCAAAGAGTGTTTGTAGGGCAACTTATGGAAG 305
||| | | |||||||||||| |||||||||||||| |||||| |||||| ||||||||
Sbjct 293 CAAAACGAAAGATCTTGGTGAAGAATTTGCAAAGAGCCTTTGTAAGGCAACCTATGGAAG 352
Query 306 TTGGCTCCTGATGCAAGATTCAAAGTATCATCTATACATTTTGAATATATTCACTCGCA- 364
||||||||| |||| |||| | || | || |||||||||||||||||||||| || |
Sbjct 353 TTGGCTCCTTATGCGAGATCCTCGGTTTAATTTATACATTTTGAATATATTCACCCG-AG 411
Query 365 AGAGGATCAATCTTCCTCCTGTGGAGTCACAACTTGGCATGGTAAAGATTGAACGAACCA 424
||||||||||||| ||||||||||||||||||||||| ||| |||||| || |||||||
Sbjct 412 AGAGGATCAATCTACCTCCTGTGGAGTCACAACTTGGAATGACAAAGATGGAGCGAACCA 471
Query 425 TATATGATTGGTTTCAC-TT-TT-CACACGGTCACTATA-GCTT--T------T-C---G 468
|| ||||||| |||| | || || |||||| |||| | | | | | | | |
Sbjct 472 TAGATGATTGCTTTCGCATTATTTCACACGATCACAACATGATCAGTAGGGAGTACATAG 531
Query 469 --CT--A-A--GTTCCCC-TGTGTTTTGGATTGACGAGGAATCCAAAGATTATATAGTTA 520
|| | | | ||| |||||||||||| |||||| || |||||||||| |||||||
Sbjct 532 GTCTTTATATAGGACCCTGTGTGTTTTGGATCGACGAGAAAACCAAAGATTACATAGTTA 591
Query 521 TGTGGGGACTTGGA-GTTTATTGTGTGGTTTATGCCAAGAAAGGAGATACCTCGTGGAAT 579
| |||||||||||| | | | |||||||||| ||||||||||||||||||||||||||
Sbjct 592 TATGGGGACTTGGAAGATGGTC-TGTGGTTTATTCCAAGAAAGGAGATACCTCGTGGAAT 650
Query 580 CAAATCCCCCAAACTTCATATTTTTATGACATGGTTTACAAGGATCACAAGCTTTACTTC 639
|| || || ||| |||| ||| || ||||||||||||||| ||| ||||||||||||||
Sbjct 651 CAGATTCCGGAAATTTCAGATTGTTGTGACATGGTTTACAAAGATTACAAGCTTTACTTC 710
Query 640 T 640
|
Sbjct 711 T 711
> Ahg889961 jgi|Araly1|889961|Al_scaffold_0007_1947
Length=1095
Score = 303 bits (164), Expect = 1e-81
Identities = 328/405 (81%), Gaps = 19/405 (5%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAACCATAACCCTAATACATGGTCGGAGCTTCCTCTAGATCTCTTGAACTTA 60
|||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGAACTATAACCCTAATTCTTGGTCGGAGCTTCCTCTAGATCTCTTGAACTTA 60
Query 61 GTTTTCAAACGCCTCAGCTTAGTTAATTTCCAACGAGCTAAATCCGTATGCTCCACTCGG 120
|||||| ||||||||||||| | ||||||||||||||||||||| || || || || ||
Sbjct 61 GTTTTCGAACGCCTCAGCTTTGCTAATTTCCAACGAGCTAAATCAGTGTGTTCGTCTTGG 120
Query 121 TACTCTGTTTCGAGACAA-TGCGTGCCCGAACGTCAGATCGCTTTG-CTGATTCTCTTCC 178
||||||| ||| |||||| | |||||| || ||| ||| | ||| |||||||||||||
Sbjct 121 TACTCTGCTTCCAGACAAGT-CGTGCCAAAAAATCATATC-CATTGGCTGATTCTCTTCC 178
Query 179 C-CAAAGAAGACAACACCGATAACAGTACTTG-TA-A-GTTGTTCAATCCCGACGAAAAA 234
| | | ||| |||||| | | |||| | || | | ||||||||||||||| ||||||
Sbjct 179 CTCGA-GAAAACAACAACAACAACAAAAATTCATGCACGTTGTTCAATCCCGAGGAAAAA 237
Query 235 GACAAACTTTACAAGATGCAAGATCTTGGT---G-TG--GAATTTGCAAAGA-GTGTTTG 287
|| ||||||||||| | |||||| ||| | | || ||||||||||| | ||| ||
Sbjct 238 GAAAAACTTTACAAAACCCAAGATTTTGATCTTGGTGAAGAATTTGCAAA-ATGTGAATG 296
Query 288 TAGGGCAACTTATGGAAGTTGGCTCCTGATGCAAGATTCAAAGTATCATCTATACATTTT 347
||||||||| |||||||||||||| || ||||||||| | || | |||| |||||| |
Sbjct 297 TAGGGCAACCTATGGAAGTTGGCTTCTAATGCAAGATCCTCTGTTTAATCTCTACATTGT 356
Query 348 GAATATATTCACTCG-CAAGAGGATCAATCTTCCTCCTGTGGAGT 391
|||| | || || | | ||||||||||||| | ||| |||||||
Sbjct 357 GAATCTCTTTAC-CAACGAGAGGATCAATCTACTTCCCGTGGAGT 400
> Ahg337411 jgi|Araly1|337411|fgenesh1_pg.C_scaffold_1003976
Length=1032
Score = 224 bits (121), Expect = 1e-57
Identities = 490/655 (75%), Gaps = 78/655 (12%)
Strand=Plus/Plus
Query 496 GAGGAATCCAAAGATTATATAGTTATGTGGGGACTTGGAGTTTATTGTGTGGTTTATGCC 555
||| || ||||||||||| ||||| | |||||| || ||| || ||||| ||||| |
Sbjct 398 GAGAAAACCAAAGATTATCTAGTTGTTTGGGGA-TTAGAGATTGGTGTGTAGTTTACATC 456
Query 556 AAGAAAGGAGATACC-TCGTGGAATCAAATCCCCCAAACTTCATATTTTTATGACATGGT 614
||||||||||||||| || ||||| |||||||| ||||||||| ||| ||| |||||||
Sbjct 457 AAGAAAGGAGATACCTTC-TGGAACCAAATCCCGCAAACTTCAGATTGTTACCACATGGT 515
Query 615 TTACAAGGATCACAAGCTTTACTTCTTAAGC-AG-T-ACTGG-TACTTTCCAAATCTTAG 670
||||||||||||||||||||||||||||||| | | | ||| || ||| ||||||| |
Sbjct 516 TTACAAGGATCACAAGCTTTACTTCTTAAGCTACATTA-TGGGTATTTTTAAAATCTTCG 574
Query 671 ATTTTTCTGAAGAGA-TGGACAACAAA-ACTTC-CAAG-GTG---GTATG---CTTGTT- 719
||||||||| ||||| | |||||||| | ||| | ||| || || ||| ||
Sbjct 575 ATTTTTCTGGAGAGACTCCACAACAAACATTTCACTCTTGTGTTCGTGTGGAACTTTTTC 634
Query 720 AGATA-GAA-A-A-CTTGTAGTCAC-------G--GT-A----A-CAGGAAAAGCCCTCA 760
| ||| | | | | ||||||||||| | || | | ||||||| | |||||
Sbjct 635 AAATACGTAGACAGCTTGTAGTCACACAACTTGTAGTCACCGTAACAGGAAATGTCCTCA 694
Query 761 AGGTTGCAAAAATG-TGGAGACCTACATATAGAACATGGTCCTTTCGGGTTTTCAAGATT 819
|||||| ||||||| | ||| ||| ||||| | | |||||| || ||||||||| ||
Sbjct 695 AGGTTG-AAAAATGGTATAGAGCTAGGGATAGATCCTTGTCCTTCCGCGTTTTCAAGGTT 753
Query 820 TCTTCATCAGGATA--T---GAAA--A-A-C---TTGATTCTTTGGGTGATGAGGC-ATT 866
| ||||||||||| | |||| | | | || |||||||||| || ||| ||
Sbjct 754 TATTCATCAGGATTCCTCAAGAAACCAGAACAGATTTATTCTTTGGGCGACGAGTTTAT- 812
Query 867 GCTTTTGGATCTAGGCATCACTGTGCTCGCCAGTGACGT-TGAGGGATTCAAAAGAAATT 925
||||||||||| |||||||||||||||||||| | || | ||| ||||||| ||||| |
Sbjct 813 GCTTTTGGATCAAGGCATCACTGTGCTCGCCAATAAC-TCTGATGGATTCATTAGAAACT 871
Query 926 CCATCTATTTCAGTTGTAGACCTAGTGGTGGTTATGAAACTAACGCAAGTGATTTATTTC 985
|||||||||||||| | | |||| ||| | ||| | |||| | || | |||
Sbjct 872 CCATCTATTTCAGT---A--C-TAGTCATGGAAA-GAA--T---GCAAATAATATCTTTA 919
Query 986 TTTTCAATCTCGAGACACAGAAGATGGAGC---TACTGCACA-A--ATTTGATTGTTCGT 1039
| |||||||||||||| ||| ||||||||| | ||||||| | ||||||| ||||
Sbjct 920 TCTTCAATCTCGAGACGCAGGAGATGGAGCGGCTTCTGCACACATTATTTGATAGTTCA- 978
Query 1040 CCC-TTCAACTCTATAGA-TCTCGATGGTTCTTACCAAGTTTGACTCACACATGA 1092
|| ||| | ||| ||| | || |||||||||||||||||| ||||| | ||||
Sbjct 979 CCTATTCCATTCTCCAGAGT-TCAATGGTTCTTACCAAGTTTCACTCATATATGA 1032
Score = 158 bits (85), Expect = 1e-37
Identities = 103/112 (92%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 213 GTTGTTCAATCCCGACGAAAAAGACAAACTTTACAAGATGCAAGATCTTGGTGTGGAATT 272
|||||||||||| || |||||| ||||||||||||| | |||||||||||||||||||||
Sbjct 153 GTTGTTCAATCCGGAGGAAAAACACAAACTTTACAAAACGCAAGATCTTGGTGTGGAATT 212
Query 273 TGCAAAGAGTGTTTGTAGGGCAACTTATGGAAGTTGGCTCCTGATGCAAGAT 324
||||||||||||||||| |||||| ||||||||||||||||| |||| ||||
Sbjct 213 TGCAAAGAGTGTTTGTATGGCAACCTATGGAAGTTGGCTCCTAATGCGAGAT 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40677152439
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5