BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22170.1
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889961 jgi|Araly1|889961|Al_scaffold_0007_1947 1271 0.0
Ahg492647 jgi|Araly1|492647|fgenesh2_kg.7__2080__AT4G22180.1 357 1e-97
Ahg945916 jgi|Araly1|945916|scaffold_702145.1 329 2e-89
Ahg945918 jgi|Araly1|945918|scaffold_702147.1 303 1e-81
Ahg945917 jgi|Araly1|945917|scaffold_702146.1 300 2e-80
Ahg354506 jgi|Araly1|354506|fgenesh1_pg.C_scaffold_7001679 294 8e-79
> Ahg889961 jgi|Araly1|889961|Al_scaffold_0007_1947
Length=1095
Score = 1271 bits (688), Expect = 0.0
Identities = 980/1115 (88%), Gaps = 43/1115 (4%)
Strand=Plus/Plus
Query 1 ATGGAGAGGAAAC-ATAACCCTAATTCCTGGTCTGATCTTCCTC-ACGATCTCTTGAACT 58
||||||| | ||| ||||||||||||| ||||| || ||||||| | |||||||||||||
Sbjct 1 ATGGAGAAG-AACTATAACCCTAATTCTTGGTCGGAGCTTCCTCTA-GATCTCTTGAACT 58
Query 59 TGGTGTTCGAACGCCTCAGCTTTGCTAATTT-CAACCGAGCCAGGTCCGTGTGTTCGTCT 117
| || |||||||||||||||||||||||||| ||| ||||| | || ||||||||||||
Sbjct 59 TAGTTTTCGAACGCCTCAGCTTTGCTAATTTCCAA-CGAGCTAAATCAGTGTGTTCGTCT 117
Query 118 TGGTACTCTGCTTCGAGACAA-TCGGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTT 176
|||||||||||||| |||||| || ||||| |||||||| ||||||||||||||||||||
Sbjct 118 TGGTACTCTGCTTCCAGACAAGTC-GTGCCAAAAAATCATATCCATTGGCTGATTCTCTT 176
Query 177 CCCT-GAAGACAACAACAACAAGAACAACAGTTCATGCACGTTGTTCAATCCCGATGAAA 235
|||| | ||| ||||||||||| ||||| | |||||||||||||||||||||||| ||||
Sbjct 177 CCCTCG-AGAAAACAACAACAACAACAAAAATTCATGCACGTTGTTCAATCCCGAGGAAA 235
Query 236 AAGACAAACTTTACAAAACGC-A-A----CATCTTGATGAGGAATTTGCAAAGA-GTGTT 288
|||| |||||||||||||| | | | |||||| ||| ||||||||||| | |||
Sbjct 236 AAGAAAAACTTTACAAAACCCAAGATTTTGATCTTGGTGAAGAATTTGCAAA-ATGTGAA 294
Query 289 TGTAGGGCAACCTATGGAAGTTGG-TTCCTAATGGTAGATCCTCTGTTTAATCTCTATAT 347
|||||||||||||||||||||||| || |||||| ||||||||||||||||||||| ||
Sbjct 295 TGTAGGGCAACCTATGGAAGTTGGCTT-CTAATGCAAGATCCTCTGTTTAATCTCTACAT 353
Query 348 TTTGAATCTCTTTACCCGCGAGAGAATCAATCTACATCCCGTGGAGTTACTGTGGAAAGA 407
| |||||||||||||| |||||| |||||||||| ||||||||||||| ||||| |||
Sbjct 354 TGTGAATCTCTTTACCAACGAGAGGATCAATCTACTTCCCGTGGAGTTATTGTGGGAAGG 413
Query 408 TTACGAGTTAGGCGTTTCAAGTCGC-AA--CCGAATGAAGTCGAGAGGTGGGAACGTACG 464
||| ||||||||||||||| ||||| || ||||||||||| ||||||||| | |||||
Sbjct 414 TTATGAGTTAGGCGTTTCAGGTCGCAAAGGACGAATGAAGTCCAGAGGTGGGTATGTACG 473
Query 465 ATCTCCTGTGTTTTGGATTGACGAGATAACCAAAGATTATGTTGTTCTTTGGGGACTTAG 524
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 474 ATCTCCTGTGTTTTGGATTGACGAGAAAACCAAAGATTATGTAGTTCTTTGGGGACTTAG 533
Query 525 AGATTGGTGTGTATTTTATTCCAAGAAAGGAGATACCTCCTGGAATCAAATCCCCCAAAC 584
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 534 AGATTGGTGTGTATTTTATTCCAAGAAAGGAGATACCTCTTGGAATCAAATCCCTCAAAC 593
Query 585 TCCAGATTGTTACCGTTTGCGTTACAAGGATCACAAGCTTTACTTCCAAGGCTACTTCTC 644
||||||||||| |||| | | |||||||||||||||||||||||||| |||||||||| |
Sbjct 594 TCCAGATTGTTCCCGTATCCTTTACAAGGATCACAAGCTTTACTTCCTAGGCTACTTC-C 652
Query 645 -TAGTTTCAAAATCTTCGATCTTTCTGGAGAGATTCCACAACAAACCTTTGACTCGCTTG 703
||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||
Sbjct 653 ATAGTTTCAAAATCTTCGATCTTTCTGGAGAGATCCCACAACAAATCTTTGACTCGAGTG 712
Query 704 TTTTTG-TGGACCATTGT-CACTTTCGTCGTTGGGTCCTTTATTCCACA-C--TTGTAGT 758
||| | | ||||||| | | ||| ||| | ||| | ||| | ||||| | |||||||
Sbjct 713 TTTG-GATAGACCATTTTTC-CTTACGTGGACGGGACGTTTGTACCACAACACTTGTAGT 770
Query 759 CACACTCACAGGAAAAGTCCTCAACGTTGAAAAAATGATGGACT-GCTCTTTCACGGTTT 817
|||||||||||||||||||||||| ||||||||||||| |||| | || |||| |||||
Sbjct 771 CACACTCACAGGAAAAGTCCTCAAGGTTGAAAAAATGAGGGACAAG-TCCTTCAAGGTTT 829
Query 818 TCGAGGTTTGTTCATCAGGAAGACGGATTCATTCTCTGGGAGATGAGTCAATTCTTTTGG 877
||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 830 TCGAGGTTTATTCATCAAGAAGACGGATTCATTCTCTGGGAGATGAGTCAATTTTTTTGG 889
Query 878 AACAAGGCATCACTGTGCTCGCCAATGACACTAATGGATTCATTAGAAATTCCATCTATT 937
| |||||||||||||||| ||||||||||||| |||||||||||| ||||||||| ||||
Sbjct 890 ATCAAGGCATCACTGTGCCCGCCAATGACACTGATGGATTCATTAAAAATTCCATTTATT 949
Query 938 TCAATAATGATTGTGAAAACATTGAAAAGCACACTTACGACATGTTTATCTTCAATCTTG 997
||| |||| | || | || | || |||||| | ||||||||||||||||||||||
Sbjct 950 TCAGTAAT--T-GTTATAA-A---AA--GCACACAAAGGACATGTTTATCTTCAATCTTG 1000
Query 998 AGACACAGAAGACGGAGCCACTACACACATTTGATAGTTCTTCATTTCAATTCTCTAGAG 1057
||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 1001 AGACACATAAGACGGAGCCGCTGCATACATTTGATAGTTCTTCATTTCAATTCTCTAGAG 1060
Query 1058 CTCATTGGTTCGTACCTAGTTTCACGCTTACATGA 1092
|||| |||||||||||||||||||||| || ||||
Sbjct 1061 CTCAATGGTTCGTACCTAGTTTCACGCATAGATGA 1095
> Ahg492647 jgi|Araly1|492647|fgenesh2_kg.7__2080__AT4G22180.1
Length=1197
Score = 357 bits (193), Expect = 1e-97
Identities = 319/378 (84%), Gaps = 16/378 (4%)
Strand=Plus/Plus
Query 14 ATA-ACCCTAATTCCTGGTCTGATCTTCCTC-ACGATCTCTTGAACTT-GGTGTTCGAAC 70
||| |||| ||||||||||| || ||||||| | ||||||||| |||| |||||||||
Sbjct 47 ATACACCC-AATTCCTGGTCGGAGCTTCCTCTA-GATCTCTTG-ACTTCATTGTTCGAAC 103
Query 71 GCCTCAGCTTTGCTAATTT-CAACCGAGCCAGGTCCGTGTGTTCGTCTTGGTACTCTGCT 129
||||||||||||||||||| ||| ||||| | ||||| |||||||||||| |||| ||
Sbjct 104 GCCTCAGCTTTGCTAATTTCCAA-CGAGCTAAATCCGTCTGTTCGTCTTGGCACTCCGCA 162
Query 130 TCGAGACAATCGGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTTCCCTGAAGACAAC 189
||| ||||||| || ||| | | ||||||| |||||| ||||||||||| |||| ||
Sbjct 163 TCGCGACAATCCGTTCCC--ATA-CAGATCCCTTGGCTAATTCTCTTCCCGGAAG--AA- 216
Query 190 AACAACAAGAACAACAGTTCATGCACGTTGTTCAATCCCGATGAAAAAGACAAACTTTAC 249
||||||| ||||||| |||||||||||||||||||||||| ||||||| |||| |||||
Sbjct 217 GACAACAACAACAACAATTCATGCACGTTGTTCAATCCCGAGGAAAAAGGCAAAGTTTAC 276
Query 250 AAAACGCAACATCTTGATGAGGAATTTGCAAAGAGTGTTTGTAGGGCAACCTATGGAAGT 309
|||||| || |||||| || |||||||||||||||||||||| |||||||| |||||
Sbjct 277 AAAACGAAAGATCTTGGTGTTGAATTTGCAAAGAGTGTTTGTACTGCAACCTACGGAAGC 336
Query 310 TGGTTCCTAATG-GTAGATCCTCTGTTTAATCTCTATATTTTGAATCTCTTTACCCGCGA 368
||| |||| ||| | |||||| | || ||||||||||||| ||||||| || ||||||||
Sbjct 337 TGGCTCCTTATGCG-AGATCCACCGTATAATCTCTATATTCTGAATCTATTCACCCGCGA 395
Query 369 GAGAATCAATCTACATCC 386
||| |||||||||| |||
Sbjct 396 GAGGATCAATCTACCTCC 413
> Ahg945916 jgi|Araly1|945916|scaffold_702145.1
Length=1249
Score = 329 bits (178), Expect = 2e-89
Identities = 322/388 (83%), Gaps = 23/388 (6%)
Strand=Plus/Plus
Query 14 ATA-ACCCTAATTCCTGGTCTGATCTTCCTC-ACGATCTCTTGAACTT-GGTGTTCGAAC 70
||| |||| ||||||||||| || ||||||| | ||||||||| |||| ||||||||||
Sbjct 67 ATACACCC-AATTCCTGGTCGGAGCTTCCTCTA-GATCTCTTG-ACTTCAGTGTTCGAAC 123
Query 71 GCCTCAGCTTTGCTAATTTCAACCGAGCCAGGTCCGTGTGTTCGTCTTGGTACTCTGCTT 130
|||||||||||||||||||| | ||||| | | ||| ||||| | |||| |||| ||||
Sbjct 124 GCCTCAGCTTTGCTAATTTCCATCGAGCTAAATTCGTCTGTTCATTTTGGCACTCCGCTT 183
Query 131 CGAGACAA-TCGGTGCCCAAAAATCAGATCCA-TTGGCTGATTCTCTTCCCT-GAAGACA 187
|||||||| || | |||||| |||| ||| |||||||||||||||||| || ||||
Sbjct 184 CGAGACAAATCA-TCCCCAAA---CAGA-CCAGTTGGCTGATTCTCTTCCCCAGA-GACA 237
Query 188 ACAACAACAAGAACAACAGTTCATGCACGTTGTTCAATCCCGATGAAAAAGACAAACTTT 247
| ||||||| ||| | |||||||||||||||||||||| || ||| |||||||||
Sbjct 238 ATGACAACAATAAC-----T-CATGCACGTTGTTCAATCCCGAGGAGAAACACAAACTTT 291
Query 248 ACAAAACGCAACATCTTGATGAGGAATTTGCAAAGAGTGTTTGTAGGGCAACCTATGGAA 307
|||||||| || |||||| ||| |||||||||||||| |||||| ||||||||||||||
Sbjct 292 ACAAAACGAAAGATCTTGGTGAAGAATTTGCAAAGAGCCTTTGTAAGGCAACCTATGGAA 351
Query 308 GTTGGTTCCTAATG-GTAGATCCTCTGTTTAATCTCTATATTTTGAATCTCTTTACCCGC 366
||||| |||| ||| | |||||||| ||||||| | || ||||||||| | || |||||
Sbjct 352 GTTGGCTCCTTATGCG-AGATCCTCGGTTTAATTTATACATTTTGAATATATTCACCCGA 410
Query 367 GAGAGAATCAATCTACATCCCGTGGAGT 394
||||| |||||||||| ||| |||||||
Sbjct 411 GAGAGGATCAATCTACCTCCTGTGGAGT 438
> Ahg945918 jgi|Araly1|945918|scaffold_702147.1
Length=1198
Score = 303 bits (164), Expect = 1e-81
Identities = 314/384 (82%), Gaps = 19/384 (5%)
Strand=Plus/Plus
Query 22 AATTCCTGGTCTGATCTTCCTCA-CGATCTCTTGAACTTGGTGTTCGAACGCCTCAGCTT 80
|||| |||||| || |||||| | |||||||||| ||||||||| |||||||||||||
Sbjct 78 AATTACTGGTCGGAGCTTCCT-ATATATCTCTTGAATTTGGTGTTCCAACGCCTCAGCTT 136
Query 81 TGCTAATTTCAACCGAGCCAGGTCCGTGTGTTCGTCTTGGTACTCTGCTTCGAGACAATC 140
|||||||||| | |||| | || || || || |||||| |||||||||||||||||||
Sbjct 137 TGCTAATTTCCAGAGAGCTAAATCAGTATGCTCCTCTTGGCACTCTGCTTCGAGACAATC 196
Query 141 GGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTTCCCTGAAGACAACAACAACAAGAA 200
||||||||||| ||||| |||||||||||| |||||||| ||| ||| |||||| | |||
Sbjct 197 GGTGCCCAAAAGTCAGACCCATTGGCTGATACTCTTCCCCGAAAACATCAACAA-A-GAA 254
Query 201 CAACAGTTCATGCACGTTGTTCAATCCCGATGAAAAAGACAAACTTTACAAAACGCAACA 260
|| | | | |||| ||||||||||||||| |||||||||||||||||||| |||||| |
Sbjct 255 -AA-A-T-CTTGCAAGTTGTTCAATCCCGAGGAAAAAGACAAACTTTACAAGACGCAAGA 310
Query 261 TCTTGATGAGGAATTTGCAAAGAGTGTTTGTAGGGCAACCTATGGAAGTTGG-TTCCTAA 319
||||| | |||||||| || |||| |||||| |||||||||||||||||| ||| ||
Sbjct 311 TCTTGGTTTGGAATTTGGAAGGAGTCTTTGTATAGCAACCTATGGAAGTTGGCTTCTTA- 369
Query 320 TGGTAGATCCTCTGT-T--T-A-A-TC-TCTATAT-TT-TGAATCTCTTTACCCGCGAGA 370
|| |||| | || | | | | | |||||| || ||||||| || ||||||||||
Sbjct 370 TGCAAGATTCAAAGTATACTGACAATAGTCTATACATTGTGAATCTATTCACCCGCGAGA 429
Query 371 GAATCAATCTACATCCCGTGGAGT 394
|||||||||| | ||| |||||||
Sbjct 430 GAATCAATCTTCCTCCTGTGGAGT 453
> Ahg945917 jgi|Araly1|945917|scaffold_702146.1
Length=1216
Score = 300 bits (162), Expect = 2e-80
Identities = 313/381 (82%), Gaps = 29/381 (8%)
Strand=Plus/Plus
Query 9 GAAACATAACCCTAATTCCTGGTCTGATCTTCCTC-ACGATCTCTTGAACTTGGTGTTCG 67
||| |||||||||||||||||||| || ||||||| | ||||||||||| |||||||| |
Sbjct 26 GAACCATAACCCTAATTCCTGGTCGGACCTTCCTCTA-GATCTCTTGAATTTGGTGTTTG 84
Query 68 AACGCCTCAGCTTTGCTAATTT-CAACCGAGCCAGGTCCGTGTGTTCGTCTTGGTACTCT 126
||||||| |||||||||| ||| ||| ||||||| |||||||||||||||||||||||||
Sbjct 85 AACGCCTTAGCTTTGCTAGTTTCCAA-CGAGCCAAGTCCGTGTGTTCGTCTTGGTACTCT 143
Query 127 GCTTCGAGACAAT-CGGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTTCCCTGAAGA 185
||||||||||||| || |||||||||| ||||||| |||||||||||||||||| |||||
Sbjct 144 GCTTCGAGACAATGCG-TGCCCAAAAAGCAGATCCCTTGGCTGATTCTCTTCCCCGAAGA 202
Query 186 CAACAACAACAAGAACAACAGTT-CATG--CA-CG-------TTGTT-CAA-T----C-- 226
|||||||||||| ||||||| || || | || | ||| | |
Sbjct 203 CAACAACAACAACAACAACAACAACAACAACAACAACAACAATTCATGCAAGTTGTTCAA 262
Query 227 -CC-GATGAAAAAGACAAACTTTACAAAACGCAACATCTTGATGAGGAATTTGCAAAGAG 284
|| ||||||||| | |||||||||||||||||| |||||| || ||||||||||||||
Sbjct 263 TCCCGATGAAAAACAAAAACTTTACAAAACGCAAGATCTTGGTGTTGAATTTGCAAAGAG 322
Query 285 TGTTTGTAGGGCAACCTATGGAAGTTGGTTCCTAATG-GTAGATCCTCTGTTTAATCTCT 343
||| ||| |||||||||||||| ||| |||| | | | |||||| | || ||||||||
Sbjct 323 TGTGTGTCTAGCAACCTATGGAAGCTGGCTCCTTACGAG-AGATCCACGGTATAATCTCT 381
Query 344 ATATTTTGAATCTCTTTACCC 364
| ||||||||||| |||||||
Sbjct 382 ACATTTTGAATCTTTTTACCC 402
> Ahg354506 jgi|Araly1|354506|fgenesh1_pg.C_scaffold_7001679
Length=1296
Score = 294 bits (159), Expect = 8e-79
Identities = 314/386 (81%), Gaps = 21/386 (5%)
Strand=Plus/Plus
Query 1 ATGGAGAGGAAACATAACCCTAATTCCTGGTCTGATCTTCCTC-ACGATCTCTTGAACTT 59
||||||| ||| || ||||||||| ||||||| || ||||||| | ||||||||||||||
Sbjct 1 ATGGAGAAGAACCAAAACCCTAATACCTGGTCGGAGCTTCCTCTA-GATCTCTTGAACTT 59
Query 60 GGTGTTCGAACGCCTCAGCTTTGCTAA-TTTCAACCGAGCCAGGTCCGTGTGTTCGTCTT 118
|| ||| |||||||||| |||||||| |||| | ||||| | || |||||||||||||
Sbjct 60 AGTTTTCAAACGCCTCAGTTTTGCTAATTTTCGA-CGAGCGAAATCGGTGTGTTCGTCTT 118
Query 119 GGTACTCTGCTTCGAGACAAT-CGGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTTC 177
||||||||||||||| ||||| || |||||||||||||||||| ||||||||| ||||||
Sbjct 119 GGTACTCTGCTTCGAAACAATGCG-TGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTC 177
Query 178 CCTGAAGACAACAACAACAAGAACAACAGTTCATGCACGTTGTTCAATCCCGATGAAAAA 237
|| ||||||| || | || | ||| |||||||||||| ||||||||||| || |||
Sbjct 178 CCCAAAGACAA-AA-A-CA-G--CAA---TTCATGCACGTTTTTCAATCCCGAGGACAAA 228
Query 238 GACAAACTT-TACAAAACGCAACATCTTGATGAGGAATTTGCAAAGAGTGTTTGTAGGGC 296
|| || |||||||||||| |||||| || ||||||||| ||||||||||||| ||
Sbjct 229 GATTTT-TTATACAAAACGCAAGATCTTGGTGTGGAATTTGCCAAGAGTGTTTGTATAGC 287
Query 297 AACCTATGGAAGTTGG-TTCCTAATGGTAGATCCTCTGTTTAATCTCTATATTTTGAATC 355
|||||| ||||||||| ||| || || |||| | || |||| | || ||||||||||
Sbjct 288 AACCTACGGAAGTTGGCTTCTTA-TGCAAGATTCAAAGTATAATTTATACATTTTGAATC 346
Query 356 TCTTT-ACCCGCGAGAGAATCAATCT 380
| || ||| ||||| ||| ||||
Sbjct 347 -CATTCACCAAAGAGAGTATCGATCT 371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40677152439
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5