BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G22170.1 Length=1092 Score E Sequences producing significant alignments: (Bits) Value Ahg889961 jgi|Araly1|889961|Al_scaffold_0007_1947 1271 0.0 Ahg492647 jgi|Araly1|492647|fgenesh2_kg.7__2080__AT4G22180.1 357 1e-97 Ahg945916 jgi|Araly1|945916|scaffold_702145.1 329 2e-89 Ahg945918 jgi|Araly1|945918|scaffold_702147.1 303 1e-81 Ahg945917 jgi|Araly1|945917|scaffold_702146.1 300 2e-80 Ahg354506 jgi|Araly1|354506|fgenesh1_pg.C_scaffold_7001679 294 8e-79 > Ahg889961 jgi|Araly1|889961|Al_scaffold_0007_1947 Length=1095 Score = 1271 bits (688), Expect = 0.0 Identities = 980/1115 (88%), Gaps = 43/1115 (4%) Strand=Plus/Plus Query 1 ATGGAGAGGAAAC-ATAACCCTAATTCCTGGTCTGATCTTCCTC-ACGATCTCTTGAACT 58 ||||||| | ||| ||||||||||||| ||||| || ||||||| | ||||||||||||| Sbjct 1 ATGGAGAAG-AACTATAACCCTAATTCTTGGTCGGAGCTTCCTCTA-GATCTCTTGAACT 58 Query 59 TGGTGTTCGAACGCCTCAGCTTTGCTAATTT-CAACCGAGCCAGGTCCGTGTGTTCGTCT 117 | || |||||||||||||||||||||||||| ||| ||||| | || |||||||||||| Sbjct 59 TAGTTTTCGAACGCCTCAGCTTTGCTAATTTCCAA-CGAGCTAAATCAGTGTGTTCGTCT 117 Query 118 TGGTACTCTGCTTCGAGACAA-TCGGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTT 176 |||||||||||||| |||||| || ||||| |||||||| |||||||||||||||||||| Sbjct 118 TGGTACTCTGCTTCCAGACAAGTC-GTGCCAAAAAATCATATCCATTGGCTGATTCTCTT 176 Query 177 CCCT-GAAGACAACAACAACAAGAACAACAGTTCATGCACGTTGTTCAATCCCGATGAAA 235 |||| | ||| ||||||||||| ||||| | |||||||||||||||||||||||| |||| Sbjct 177 CCCTCG-AGAAAACAACAACAACAACAAAAATTCATGCACGTTGTTCAATCCCGAGGAAA 235 Query 236 AAGACAAACTTTACAAAACGC-A-A----CATCTTGATGAGGAATTTGCAAAGA-GTGTT 288 |||| |||||||||||||| | | | |||||| ||| ||||||||||| | ||| Sbjct 236 AAGAAAAACTTTACAAAACCCAAGATTTTGATCTTGGTGAAGAATTTGCAAA-ATGTGAA 294 Query 289 TGTAGGGCAACCTATGGAAGTTGG-TTCCTAATGGTAGATCCTCTGTTTAATCTCTATAT 347 |||||||||||||||||||||||| || |||||| ||||||||||||||||||||| || Sbjct 295 TGTAGGGCAACCTATGGAAGTTGGCTT-CTAATGCAAGATCCTCTGTTTAATCTCTACAT 353 Query 348 TTTGAATCTCTTTACCCGCGAGAGAATCAATCTACATCCCGTGGAGTTACTGTGGAAAGA 407 | |||||||||||||| |||||| |||||||||| ||||||||||||| ||||| ||| Sbjct 354 TGTGAATCTCTTTACCAACGAGAGGATCAATCTACTTCCCGTGGAGTTATTGTGGGAAGG 413 Query 408 TTACGAGTTAGGCGTTTCAAGTCGC-AA--CCGAATGAAGTCGAGAGGTGGGAACGTACG 464 ||| ||||||||||||||| ||||| || ||||||||||| ||||||||| | ||||| Sbjct 414 TTATGAGTTAGGCGTTTCAGGTCGCAAAGGACGAATGAAGTCCAGAGGTGGGTATGTACG 473 Query 465 ATCTCCTGTGTTTTGGATTGACGAGATAACCAAAGATTATGTTGTTCTTTGGGGACTTAG 524 |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 474 ATCTCCTGTGTTTTGGATTGACGAGAAAACCAAAGATTATGTAGTTCTTTGGGGACTTAG 533 Query 525 AGATTGGTGTGTATTTTATTCCAAGAAAGGAGATACCTCCTGGAATCAAATCCCCCAAAC 584 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 534 AGATTGGTGTGTATTTTATTCCAAGAAAGGAGATACCTCTTGGAATCAAATCCCTCAAAC 593 Query 585 TCCAGATTGTTACCGTTTGCGTTACAAGGATCACAAGCTTTACTTCCAAGGCTACTTCTC 644 ||||||||||| |||| | | |||||||||||||||||||||||||| |||||||||| | Sbjct 594 TCCAGATTGTTCCCGTATCCTTTACAAGGATCACAAGCTTTACTTCCTAGGCTACTTC-C 652 Query 645 -TAGTTTCAAAATCTTCGATCTTTCTGGAGAGATTCCACAACAAACCTTTGACTCGCTTG 703 ||||||||||||||||||||||||||||||||| |||||||||| |||||||||| || Sbjct 653 ATAGTTTCAAAATCTTCGATCTTTCTGGAGAGATCCCACAACAAATCTTTGACTCGAGTG 712 Query 704 TTTTTG-TGGACCATTGT-CACTTTCGTCGTTGGGTCCTTTATTCCACA-C--TTGTAGT 758 ||| | | ||||||| | | ||| ||| | ||| | ||| | ||||| | ||||||| Sbjct 713 TTTG-GATAGACCATTTTTC-CTTACGTGGACGGGACGTTTGTACCACAACACTTGTAGT 770 Query 759 CACACTCACAGGAAAAGTCCTCAACGTTGAAAAAATGATGGACT-GCTCTTTCACGGTTT 817 |||||||||||||||||||||||| ||||||||||||| |||| | || |||| ||||| Sbjct 771 CACACTCACAGGAAAAGTCCTCAAGGTTGAAAAAATGAGGGACAAG-TCCTTCAAGGTTT 829 Query 818 TCGAGGTTTGTTCATCAGGAAGACGGATTCATTCTCTGGGAGATGAGTCAATTCTTTTGG 877 ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 830 TCGAGGTTTATTCATCAAGAAGACGGATTCATTCTCTGGGAGATGAGTCAATTTTTTTGG 889 Query 878 AACAAGGCATCACTGTGCTCGCCAATGACACTAATGGATTCATTAGAAATTCCATCTATT 937 | |||||||||||||||| ||||||||||||| |||||||||||| ||||||||| |||| Sbjct 890 ATCAAGGCATCACTGTGCCCGCCAATGACACTGATGGATTCATTAAAAATTCCATTTATT 949 Query 938 TCAATAATGATTGTGAAAACATTGAAAAGCACACTTACGACATGTTTATCTTCAATCTTG 997 ||| |||| | || | || | || |||||| | |||||||||||||||||||||| Sbjct 950 TCAGTAAT--T-GTTATAA-A---AA--GCACACAAAGGACATGTTTATCTTCAATCTTG 1000 Query 998 AGACACAGAAGACGGAGCCACTACACACATTTGATAGTTCTTCATTTCAATTCTCTAGAG 1057 ||||||| ||||||||||| || || |||||||||||||||||||||||||||||||||| Sbjct 1001 AGACACATAAGACGGAGCCGCTGCATACATTTGATAGTTCTTCATTTCAATTCTCTAGAG 1060 Query 1058 CTCATTGGTTCGTACCTAGTTTCACGCTTACATGA 1092 |||| |||||||||||||||||||||| || |||| Sbjct 1061 CTCAATGGTTCGTACCTAGTTTCACGCATAGATGA 1095 > Ahg492647 jgi|Araly1|492647|fgenesh2_kg.7__2080__AT4G22180.1 Length=1197 Score = 357 bits (193), Expect = 1e-97 Identities = 319/378 (84%), Gaps = 16/378 (4%) Strand=Plus/Plus Query 14 ATA-ACCCTAATTCCTGGTCTGATCTTCCTC-ACGATCTCTTGAACTT-GGTGTTCGAAC 70 ||| |||| ||||||||||| || ||||||| | ||||||||| |||| ||||||||| Sbjct 47 ATACACCC-AATTCCTGGTCGGAGCTTCCTCTA-GATCTCTTG-ACTTCATTGTTCGAAC 103 Query 71 GCCTCAGCTTTGCTAATTT-CAACCGAGCCAGGTCCGTGTGTTCGTCTTGGTACTCTGCT 129 ||||||||||||||||||| ||| ||||| | ||||| |||||||||||| |||| || Sbjct 104 GCCTCAGCTTTGCTAATTTCCAA-CGAGCTAAATCCGTCTGTTCGTCTTGGCACTCCGCA 162 Query 130 TCGAGACAATCGGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTTCCCTGAAGACAAC 189 ||| ||||||| || ||| | | ||||||| |||||| ||||||||||| |||| || Sbjct 163 TCGCGACAATCCGTTCCC--ATA-CAGATCCCTTGGCTAATTCTCTTCCCGGAAG--AA- 216 Query 190 AACAACAAGAACAACAGTTCATGCACGTTGTTCAATCCCGATGAAAAAGACAAACTTTAC 249 ||||||| ||||||| |||||||||||||||||||||||| ||||||| |||| ||||| Sbjct 217 GACAACAACAACAACAATTCATGCACGTTGTTCAATCCCGAGGAAAAAGGCAAAGTTTAC 276 Query 250 AAAACGCAACATCTTGATGAGGAATTTGCAAAGAGTGTTTGTAGGGCAACCTATGGAAGT 309 |||||| || |||||| || |||||||||||||||||||||| |||||||| ||||| Sbjct 277 AAAACGAAAGATCTTGGTGTTGAATTTGCAAAGAGTGTTTGTACTGCAACCTACGGAAGC 336 Query 310 TGGTTCCTAATG-GTAGATCCTCTGTTTAATCTCTATATTTTGAATCTCTTTACCCGCGA 368 ||| |||| ||| | |||||| | || ||||||||||||| ||||||| || |||||||| Sbjct 337 TGGCTCCTTATGCG-AGATCCACCGTATAATCTCTATATTCTGAATCTATTCACCCGCGA 395 Query 369 GAGAATCAATCTACATCC 386 ||| |||||||||| ||| Sbjct 396 GAGGATCAATCTACCTCC 413 > Ahg945916 jgi|Araly1|945916|scaffold_702145.1 Length=1249 Score = 329 bits (178), Expect = 2e-89 Identities = 322/388 (83%), Gaps = 23/388 (6%) Strand=Plus/Plus Query 14 ATA-ACCCTAATTCCTGGTCTGATCTTCCTC-ACGATCTCTTGAACTT-GGTGTTCGAAC 70 ||| |||| ||||||||||| || ||||||| | ||||||||| |||| |||||||||| Sbjct 67 ATACACCC-AATTCCTGGTCGGAGCTTCCTCTA-GATCTCTTG-ACTTCAGTGTTCGAAC 123 Query 71 GCCTCAGCTTTGCTAATTTCAACCGAGCCAGGTCCGTGTGTTCGTCTTGGTACTCTGCTT 130 |||||||||||||||||||| | ||||| | | ||| ||||| | |||| |||| |||| Sbjct 124 GCCTCAGCTTTGCTAATTTCCATCGAGCTAAATTCGTCTGTTCATTTTGGCACTCCGCTT 183 Query 131 CGAGACAA-TCGGTGCCCAAAAATCAGATCCA-TTGGCTGATTCTCTTCCCT-GAAGACA 187 |||||||| || | |||||| |||| ||| |||||||||||||||||| || |||| Sbjct 184 CGAGACAAATCA-TCCCCAAA---CAGA-CCAGTTGGCTGATTCTCTTCCCCAGA-GACA 237 Query 188 ACAACAACAAGAACAACAGTTCATGCACGTTGTTCAATCCCGATGAAAAAGACAAACTTT 247 | ||||||| ||| | |||||||||||||||||||||| || ||| ||||||||| Sbjct 238 ATGACAACAATAAC-----T-CATGCACGTTGTTCAATCCCGAGGAGAAACACAAACTTT 291 Query 248 ACAAAACGCAACATCTTGATGAGGAATTTGCAAAGAGTGTTTGTAGGGCAACCTATGGAA 307 |||||||| || |||||| ||| |||||||||||||| |||||| |||||||||||||| Sbjct 292 ACAAAACGAAAGATCTTGGTGAAGAATTTGCAAAGAGCCTTTGTAAGGCAACCTATGGAA 351 Query 308 GTTGGTTCCTAATG-GTAGATCCTCTGTTTAATCTCTATATTTTGAATCTCTTTACCCGC 366 ||||| |||| ||| | |||||||| ||||||| | || ||||||||| | || ||||| Sbjct 352 GTTGGCTCCTTATGCG-AGATCCTCGGTTTAATTTATACATTTTGAATATATTCACCCGA 410 Query 367 GAGAGAATCAATCTACATCCCGTGGAGT 394 ||||| |||||||||| ||| ||||||| Sbjct 411 GAGAGGATCAATCTACCTCCTGTGGAGT 438 > Ahg945918 jgi|Araly1|945918|scaffold_702147.1 Length=1198 Score = 303 bits (164), Expect = 1e-81 Identities = 314/384 (82%), Gaps = 19/384 (5%) Strand=Plus/Plus Query 22 AATTCCTGGTCTGATCTTCCTCA-CGATCTCTTGAACTTGGTGTTCGAACGCCTCAGCTT 80 |||| |||||| || |||||| | |||||||||| ||||||||| ||||||||||||| Sbjct 78 AATTACTGGTCGGAGCTTCCT-ATATATCTCTTGAATTTGGTGTTCCAACGCCTCAGCTT 136 Query 81 TGCTAATTTCAACCGAGCCAGGTCCGTGTGTTCGTCTTGGTACTCTGCTTCGAGACAATC 140 |||||||||| | |||| | || || || || |||||| ||||||||||||||||||| Sbjct 137 TGCTAATTTCCAGAGAGCTAAATCAGTATGCTCCTCTTGGCACTCTGCTTCGAGACAATC 196 Query 141 GGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTTCCCTGAAGACAACAACAACAAGAA 200 ||||||||||| ||||| |||||||||||| |||||||| ||| ||| |||||| | ||| Sbjct 197 GGTGCCCAAAAGTCAGACCCATTGGCTGATACTCTTCCCCGAAAACATCAACAA-A-GAA 254 Query 201 CAACAGTTCATGCACGTTGTTCAATCCCGATGAAAAAGACAAACTTTACAAAACGCAACA 260 || | | | |||| ||||||||||||||| |||||||||||||||||||| |||||| | Sbjct 255 -AA-A-T-CTTGCAAGTTGTTCAATCCCGAGGAAAAAGACAAACTTTACAAGACGCAAGA 310 Query 261 TCTTGATGAGGAATTTGCAAAGAGTGTTTGTAGGGCAACCTATGGAAGTTGG-TTCCTAA 319 ||||| | |||||||| || |||| |||||| |||||||||||||||||| ||| || Sbjct 311 TCTTGGTTTGGAATTTGGAAGGAGTCTTTGTATAGCAACCTATGGAAGTTGGCTTCTTA- 369 Query 320 TGGTAGATCCTCTGT-T--T-A-A-TC-TCTATAT-TT-TGAATCTCTTTACCCGCGAGA 370 || |||| | || | | | | | |||||| || ||||||| || |||||||||| Sbjct 370 TGCAAGATTCAAAGTATACTGACAATAGTCTATACATTGTGAATCTATTCACCCGCGAGA 429 Query 371 GAATCAATCTACATCCCGTGGAGT 394 |||||||||| | ||| ||||||| Sbjct 430 GAATCAATCTTCCTCCTGTGGAGT 453 > Ahg945917 jgi|Araly1|945917|scaffold_702146.1 Length=1216 Score = 300 bits (162), Expect = 2e-80 Identities = 313/381 (82%), Gaps = 29/381 (8%) Strand=Plus/Plus Query 9 GAAACATAACCCTAATTCCTGGTCTGATCTTCCTC-ACGATCTCTTGAACTTGGTGTTCG 67 ||| |||||||||||||||||||| || ||||||| | ||||||||||| |||||||| | Sbjct 26 GAACCATAACCCTAATTCCTGGTCGGACCTTCCTCTA-GATCTCTTGAATTTGGTGTTTG 84 Query 68 AACGCCTCAGCTTTGCTAATTT-CAACCGAGCCAGGTCCGTGTGTTCGTCTTGGTACTCT 126 ||||||| |||||||||| ||| ||| ||||||| ||||||||||||||||||||||||| Sbjct 85 AACGCCTTAGCTTTGCTAGTTTCCAA-CGAGCCAAGTCCGTGTGTTCGTCTTGGTACTCT 143 Query 127 GCTTCGAGACAAT-CGGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTTCCCTGAAGA 185 ||||||||||||| || |||||||||| ||||||| |||||||||||||||||| ||||| Sbjct 144 GCTTCGAGACAATGCG-TGCCCAAAAAGCAGATCCCTTGGCTGATTCTCTTCCCCGAAGA 202 Query 186 CAACAACAACAAGAACAACAGTT-CATG--CA-CG-------TTGTT-CAA-T----C-- 226 |||||||||||| ||||||| || || | || | ||| | | Sbjct 203 CAACAACAACAACAACAACAACAACAACAACAACAACAACAATTCATGCAAGTTGTTCAA 262 Query 227 -CC-GATGAAAAAGACAAACTTTACAAAACGCAACATCTTGATGAGGAATTTGCAAAGAG 284 || ||||||||| | |||||||||||||||||| |||||| || |||||||||||||| Sbjct 263 TCCCGATGAAAAACAAAAACTTTACAAAACGCAAGATCTTGGTGTTGAATTTGCAAAGAG 322 Query 285 TGTTTGTAGGGCAACCTATGGAAGTTGGTTCCTAATG-GTAGATCCTCTGTTTAATCTCT 343 ||| ||| |||||||||||||| ||| |||| | | | |||||| | || |||||||| Sbjct 323 TGTGTGTCTAGCAACCTATGGAAGCTGGCTCCTTACGAG-AGATCCACGGTATAATCTCT 381 Query 344 ATATTTTGAATCTCTTTACCC 364 | ||||||||||| ||||||| Sbjct 382 ACATTTTGAATCTTTTTACCC 402 > Ahg354506 jgi|Araly1|354506|fgenesh1_pg.C_scaffold_7001679 Length=1296 Score = 294 bits (159), Expect = 8e-79 Identities = 314/386 (81%), Gaps = 21/386 (5%) Strand=Plus/Plus Query 1 ATGGAGAGGAAACATAACCCTAATTCCTGGTCTGATCTTCCTC-ACGATCTCTTGAACTT 59 ||||||| ||| || ||||||||| ||||||| || ||||||| | |||||||||||||| Sbjct 1 ATGGAGAAGAACCAAAACCCTAATACCTGGTCGGAGCTTCCTCTA-GATCTCTTGAACTT 59 Query 60 GGTGTTCGAACGCCTCAGCTTTGCTAA-TTTCAACCGAGCCAGGTCCGTGTGTTCGTCTT 118 || ||| |||||||||| |||||||| |||| | ||||| | || ||||||||||||| Sbjct 60 AGTTTTCAAACGCCTCAGTTTTGCTAATTTTCGA-CGAGCGAAATCGGTGTGTTCGTCTT 118 Query 119 GGTACTCTGCTTCGAGACAAT-CGGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTTC 177 ||||||||||||||| ||||| || |||||||||||||||||| ||||||||| |||||| Sbjct 119 GGTACTCTGCTTCGAAACAATGCG-TGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTC 177 Query 178 CCTGAAGACAACAACAACAAGAACAACAGTTCATGCACGTTGTTCAATCCCGATGAAAAA 237 || ||||||| || | || | ||| |||||||||||| ||||||||||| || ||| Sbjct 178 CCCAAAGACAA-AA-A-CA-G--CAA---TTCATGCACGTTTTTCAATCCCGAGGACAAA 228 Query 238 GACAAACTT-TACAAAACGCAACATCTTGATGAGGAATTTGCAAAGAGTGTTTGTAGGGC 296 || || |||||||||||| |||||| || ||||||||| ||||||||||||| || Sbjct 229 GATTTT-TTATACAAAACGCAAGATCTTGGTGTGGAATTTGCCAAGAGTGTTTGTATAGC 287 Query 297 AACCTATGGAAGTTGG-TTCCTAATGGTAGATCCTCTGTTTAATCTCTATATTTTGAATC 355 |||||| ||||||||| ||| || || |||| | || |||| | || |||||||||| Sbjct 288 AACCTACGGAAGTTGGCTTCTTA-TGCAAGATTCAAAGTATAATTTATACATTTTGAATC 346 Query 356 TCTTT-ACCCGCGAGAGAATCAATCT 380 | || ||| ||||| ||| |||| Sbjct 347 -CATTCACCAAAGAGAGTATCGATCT 371 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40677152439 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5