BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22180.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492647 jgi|Araly1|492647|fgenesh2_kg.7__2080__AT4G22180.1 1609 0.0
Ahg945916 jgi|Araly1|945916|scaffold_702145.1 1173 0.0
Ahg354506 jgi|Araly1|354506|fgenesh1_pg.C_scaffold_7001679 505 4e-142
Ahg889961 jgi|Araly1|889961|Al_scaffold_0007_1947 279 2e-74
Ahg337411 jgi|Araly1|337411|fgenesh1_pg.C_scaffold_1003976 134 2e-30
> Ahg492647 jgi|Araly1|492647|fgenesh2_kg.7__2080__AT4G22180.1
Length=1197
Score = 1609 bits (871), Expect = 0.0
Identities = 1051/1136 (93%), Gaps = 19/1136 (2%)
Strand=Plus/Plus
Query 6 AAAGTGGCAT-AACCCTAGTTCTCCTAAGCGTCTCAGAGGAGATACACCCAATTCCTGGT 64
|||| ||||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 7 AAAG-GGCATGAA-CCTAGTTCTCCTAAGCGTCTCAGACGAGATACACCCAATTCCTGGT 64
Query 65 CGGAGCTTCCTCTAGATCTCTTGACTGCAGTGTTCGAACGCCTCAGCTATGCAAATTTCC 124
|||||||||||||||||||||||||| || |||||||||||||||||| ||| |||||||
Sbjct 65 CGGAGCTTCCTCTAGATCTCTTGACTTCATTGTTCGAACGCCTCAGCTTTGCTAATTTCC 124
Query 125 AACGAGCTAAATCCGTCTGTTCGTCTTGGCACTCCGGATCGAGACAATCCGTTCCCATAC 184
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 125 AACGAGCTAAATCCGTCTGTTCGTCTTGGCACTCCGCATCGCGACAATCCGTTCCCATAC 184
Query 185 AGATCCCTTGGCTGATTCTCTTCCC-G--G-A-A-TACGACAACAACAATTCATGCACGT 238
||||||||||||| ||||||||||| | | | | || |||||||||||||||||||||
Sbjct 185 AGATCCCTTGGCTAATTCTCTTCCCGGAAGAAGACAACAACAACAACAATTCATGCACGT 244
Query 239 TGTTCAATCCCGAGGAAAAAGGCCAAGTTTACAAAATGAAAGATCTTGGTGTTGAATTTT 298
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 245 TGTTCAATCCCGAGGAAAAAGGCAAAGTTTACAAAACGAAAGATCTTGGTGTTGAATTTG 304
Query 299 CAAAGAGTGTTTGTACTGCAACCTACGGAAGCTGGCTCCTTATGCGAGATCCACTGTATA 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 305 CAAAGAGTGTTTGTACTGCAACCTACGGAAGCTGGCTCCTTATGCGAGATCCACCGTATA 364
Query 359 ATCTCTATATTTTGAATCTATTCACCCACGAGAGGGTAAATCTACCTCCTTTCGAGTCAC 418
||||||||||| ||||||||||||||| ||||||| | |||||||||||||| |||||||
Sbjct 365 ATCTCTATATTCTGAATCTATTCACCCGCGAGAGGATCAATCTACCTCCTTTTGAGTCAC 424
Query 419 AACTTGGCATGGTAAAGATTGAACGAACCATATATGATTGGTTTCAC-TCTACACTCCAT 477
||||||| ||| |||||| || ||||||||| ||||| ||||| | | | ||| ||||
Sbjct 425 AACTTGGGATGACAAAGATCGAGCGAACCATAGATGATCAGTTTCGCATTT-CACCCCAT 483
Query 478 TACAACGGTAAGGAGTACCACAAACGTATTAGAATACTATCCACTGTGTTTTGGATCGAT 537
|||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 484 TACAACGGTAGGGAGTACCACAAACGTATTAGAATACAATCCCCTGTGTTTTGGATCGAC 543
Query 538 GAGAAAACAAAAGATTACGTAGTTATATGGGGACTTGGAAGTTCATGTGTGGTTTATTCC 597
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 544 GAGAAAACCAAAGATTACGTAGTTATATGGGGACTTGGAAGTTTGTGTGTGGTTTATTCC 603
Query 598 AAGAAAGGAGATAAATGTTGGAATCAAATTCCAGAAACTTCAAATTGTCATCACATGGTT 657
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 604 AAGAAAGGAGATAAATGTTGGAATCAAATTCCAGAAAGTTCACATTGTCATCACATGGTT 663
Query 658 TACAAGGATCACAAGCTTTACTTCTCTACGTCTACCTACAAATATGAATTCAGAATCTTT 717
||||||||||||||||||||| |||| | ||||| |||||||||||||||||||||||||
Sbjct 664 TACAAGGATCACAAGCTTTACCTCTCCAAGTCTAACTACAAATATGAATTCAGAATCTTT 723
Query 718 GATTTCTCTAGAGAGATTCCTCAACAAATCTTTCAAGGCTATGTCATTATGCAAGGACTT 777
|||||||||||||||||||| ||||||| ||||||||| | |||||||||||||||||||
Sbjct 724 GATTTCTCTAGAGAGATTCCGCAACAAACCTTTCAAGGTTGTGTCATTATGCAAGGACTT 783
Query 778 ACATTAAATCGTCATCGTGGTCAACCAGGTTATCCCTTT-GCTACTATTGATACAAAACT 836
|||||||||| ||||| |||||||||||||||||||||| | ||||||||||||||||||
Sbjct 784 ACATTAAATCATCATCCTGGTCAACCAGGTTATCCCTTTAG-TACTATTGATACAAAACT 842
Query 837 TGTTGTCACAGTAACTGGAGATGTCCTTAAGGTTGACAGAATAGTGGA--GAAAGAGACT 894
||||||||||||||||||||||||||| |||||||| ||||||||||| | || | |
Sbjct 843 TGTTGTCACAGTAACTGGAGATGTCCTCAAGGTTGATAGAATAGTGGAACGTAACAC-C- 900
Query 895 AGAATCTGCAGAtttttttACGTCTACAAGGTTTATTCATCGGGGTCCTATAAGAAATAT 954
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 901 AGAATCTGCAGATTTTTCGACGTCTACAAGGTTTATTCATCGGTGTCCTATAAGAAATAT 960
Query 955 GAAAAAGTTGAATCTTTGGGGGACGAGGCAATTCTTTTGGATCTAGGTATCACTATGCTC 1014
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 961 GAAAAAGTTGAATCTTTGGGCAACGAGGCAATTCTTTTGGATCTAGGTATCACTATGCTA 1020
Query 1015 GCCAATGACACTGTGGGACTCCTAGGAAATTCCATTTATTTCAGTGGTACTCATACAAAG 1074
|||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 1021 GCCAATGACATTGTGGGACTCGAAAAAAATTCCATCTATTTCAGTGGTACTCATACAAAG 1080
Query 1075 TC-GAAGGTCATTAACGATACATTTATCTTCAGTCTCGAGACACAGAAGATGGATC 1129
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TCAGA-GGTCATTAACGATACATTTATCTTCAGTCTCGAGACACAGAAGATGGATC 1135
> Ahg945916 jgi|Araly1|945916|scaffold_702145.1
Length=1249
Score = 1173 bits (635), Expect = 0.0
Identities = 1043/1235 (84%), Gaps = 48/1235 (4%)
Strand=Plus/Plus
Query 1 ATGGA-AAAGTGGCAT-AACCCTAGTTCTCCTAAGCGTCTCAGAGGAGATACACCCAATT 58
||||| |||| ||||| || |||||||||||||||||||||||| |||||||||||||||
Sbjct 21 ATGGAGAAAG-GGCATGAA-CCTAGTTCTCCTAAGCGTCTCAGACGAGATACACCCAATT 78
Query 59 CCTGGTCGGAGCTTCCTCTAGATCTCTTGACTGCAGTGTTCGAACGCCTCAGCTATGCAA 118
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
Sbjct 79 CCTGGTCGGAGCTTCCTCTAGATCTCTTGACTTCAGTGTTCGAACGCCTCAGCTTTGCTA 138
Query 119 ATTTCCAACGAGCTAAATCCGTCTGTTCGTCTTGGCACTCCGGATCGAGAC-AATCCGTT 177
||||||| |||||||||| ||||||||| | ||||||||||| ||||||| ||| | |
Sbjct 139 ATTTCCATCGAGCTAAATTCGTCTGTTCATTTTGGCACTCCGCTTCGAGACAAAT-CATC 197
Query 178 CCCATACAGATCC-CTTGGCTGATTCTCTT-CCC-G-GA-ATACGACAACAACAATTCAT 232
|||| ||||| || ||||||||||||||| ||| | || | | |||||||| || ||||
Sbjct 198 CCCAAACAGA-CCAGTTGGCTGATTCTCTTCCCCAGAGACA-ATGACAACAATAACTCAT 255
Query 233 GCACGTTGTTCAATCCCGAGGAAAAAGGCCAAGTTTACAAAATGAAAGATCTTGGTGTTG 292
|||||||||||||||||||||| ||| | || ||||||||| |||||||||||||| |
Sbjct 256 GCACGTTGTTCAATCCCGAGGAGAAACACAAACTTTACAAAACGAAAGATCTTGGTGAAG 315
Query 293 AATTTTCAAAGAGTGTTTGTACTGCAACCTACGGAAGCTGGCTCCTTATGCGAGATCCAC 352
||||| ||||||| |||||| |||||||| ||||| |||||||||||||||||||| |
Sbjct 316 AATTTGCAAAGAGCCTTTGTAAGGCAACCTATGGAAGTTGGCTCCTTATGCGAGATCCTC 375
Query 353 TGTATAATCTCTATATTTTGAATCTATTCACCC-ACGAGAGGGTAAATCTACCTCCTTTC 411
|| |||| | || ||||||||| ||||||||| | |||||| | |||||||||||| |
Sbjct 376 GGTTTAATTTATACATTTTGAATATATTCACCCGA-GAGAGGATCAATCTACCTCCTGTG 434
Query 412 GAGTCACAACTTGGCATGGTAAAGATTGAACGAACCATATATGATTGGTTT--CACT-CT 468
|||||||||||||| ||| |||||| || ||||||||| ||||||| ||| || | |
Sbjct 435 GAGTCACAACTTGGAATGACAAAGATGGAGCGAACCATAGATGATTGCTTTCGCATTATT 494
Query 469 ACACTCCATTACAAC--GGTAAGGA-GTACCACAAACGT-ATTAGAATACTATCCACTGT 524
||| | || ||||| | | || | | | ||| | || ||| ||| | || |||
Sbjct 495 TCACACGATCACAACATGATCAGTAGGGAGTACATAGGTCTTTA-TATAGGACCCTGTGT 553
Query 525 GTTTTGGATCGATGAGAAAACAAAAGATTACGTAGTTATATGGGGACTTGGAAGTTCATG 584
|||||||||||| |||||||| ||||||||| |||||||||||||||||||||| | |
Sbjct 554 GTTTTGGATCGACGAGAAAACCAAAGATTACATAGTTATATGGGGACTTGGAAGATGGTC 613
Query 585 TGTGGTTTATTCCAAGAAAGGAGATAAAT-GTTGGAATCAAATTCCAGAAACTTCAAATT 643
|||||||||||||||||||||||||| | | |||||||| ||||| |||| |||| |||
Sbjct 614 TGTGGTTTATTCCAAGAAAGGAGATACCTCG-TGGAATCAGATTCCGGAAATTTCAGATT 672
Query 644 GTCATCACATGGTTTACAAGGATCACAAGCTTTACTTCTCTACG-TCTACCTACAAATAT 702
|| | ||||||||||||| ||| ||||||||||||||||| | ||| |||| ||| |
Sbjct 673 GTTGTGACATGGTTTACAAAGATTACAAGCTTTACTTCTCT-GGCTCTGGCTACCAATGT 731
Query 703 GAATTCAGAATCTTTGATTTCTCTAGAGAGATTCCTCAACAAATCTTTCAAGGCTAT-GT 761
|| |||||||||||||||||||||||||||| ||| ||||||| ||||||||| ||| ||
Sbjct 732 GATTTCAGAATCTTTGATTTCTCTAGAGAGACTCCGCAACAAACCTTTCAAGG-TATTGT 790
Query 762 CATTATGCAAGGACTTACATTAAATCGTCATCGTGGTCAACCAGGTTAT-CCCTTTGCTA 820
||||||||||||||||| |||||||| || || |||||||||||| ||| ||| ||| |
Sbjct 791 CATTATGCAAGGACTTATATTAAATCATCGTCATGGTCAACCAGGCTATTCCCACTGC-A 849
Query 821 CTATT-GATACAAAACTTGTTGTCACAGTAACTGGAGATGTCCTTAAGGTTGACAGAATA 879
|| || | |||||||||||| |||||||||| |||||||||||| |||||||||||||||
Sbjct 850 CTGTTAG-TACAAAACTTGTAGTCACAGTAAATGGAGATGTCCTCAAGGTTGACAGAATA 908
Query 880 GTGGAGAAAG-AGA-CTAGAATCTGCAGAtttttttACGTCTACAAGGTTTATTCATCGG 937
||| || | | | | ||||| ||||| |||||| |||| ||||||||||||||||| |
Sbjct 909 -TGG-GAGCGTAAAACCAGAATTTGCAGGTTTTTTGACGTATACAAGGTTTATTCATCAG 966
Query 938 GGTCCTATAA-GAAATATGAAAAAGTTGAATCTTTGGGGGACGAGGCAATTCTTTTGGAT 996
||||| ||| ||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 967 AGTCCT-TAAAGAACTATGAAAAAGTTGAATCTTTGGGCGACGAGGCAATGCTTTTGGAT 1025
Query 997 CTAGGTATCACTATGCTCGCCAATGACACTGTGGGACTCCTAGGAAATTCCATTTATTTC 1056
|||||||||||| ||||||||||||||| || ||| ||| | |||||| ||| ||||||
Sbjct 1026 CTAGGTATCACTGTGCTCGCCAATGACATTGAGGGGCTCAAAAGAAATTGCATCTATTTC 1085
Query 1057 AGTGGTACTCAT-ACAAAGTCGAAGGTCATTAACGATACATTTATCTTCAGTCTCGAGAC 1115
||||||| || | | ||| | | ||||| | |||| ||||||||||| | |||||||
Sbjct 1086 AGTGGTAGTCTTGA-AAA-T--A---TCATTCATGATAAATTTATCTTCAATATCGAGAC 1138
Query 1116 ACAGAAGATGGATCCAGTGCACAAGTTTGATTGTTCATCAGCTCAACTCTCTAGTGCTCG 1175
|||||| ||||| | ||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1139 ACAGAAAATGGAGCGAGTGCACAAACTTGATTGTTCATCTGCTCAACTCTCTAGTGCTCG 1198
Query 1176 ATGGTTCTTACCAAGTT-CACACAAACTTGATTGA 1209
||||||||||||||||| |||||||||||||||||
Sbjct 1199 ATGGTTCTTACCAAGTTTCACACAAACTTGATTGA 1233
> Ahg354506 jgi|Araly1|354506|fgenesh1_pg.C_scaffold_7001679
Length=1296
Score = 505 bits (273), Expect = 4e-142
Identities = 788/1027 (77%), Gaps = 74/1027 (7%)
Strand=Plus/Plus
Query 51 ACCC-AATTCCTGGTCGGAGCTTCCTCTAGATCTCTTGA-CTGCAGTGTTCGAACGCCTC 108
|||| ||| |||||||||||||||||||||||||||||| || ||| ||| ||||||||
Sbjct 17 ACCCTAATACCTGGTCGGAGCTTCCTCTAGATCTCTTGAACTT-AGTTTTCAAACGCCTC 75
Query 109 AGCTATGCAAATTTCCAACGAGCTAAATCCGTCTGTTCGTCTTGGCACTCCGGATCGAGA 168
|| | ||| ||||| | |||||| ||||| || |||||||||||| |||| | |||| |
Sbjct 76 AGTTTTGCTAATTTTCGACGAGCGAAATCGGTGTGTTCGTCTTGGTACTCTGCTTCGAAA 135
Query 169 CAATCCGTTCCCATA---CAGATCCCTTGGCTGATTCTCTTCCCGGAATACGACAACAAC 225
|||| ||| |||| | ||||||||||||||||| |||||||| || || | |||| |
Sbjct 136 CAATGCGTGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTCCCCAAAGACAAAAACAGC 195
Query 226 AATTCATGCACGTTGTTCAATCCCGAGGAAAAAGGCCAAGTT-TACAAAATGAAAGATCT 284
|||||||||||||| |||||||||||||| |||| || ||||||| | |||||||
Sbjct 196 AATTCATGCACGTTTTTCAATCCCGAGGACAAAGATTTT-TTATACAAAACGCAAGATCT 254
Query 285 TGGTGTTGAATTTTCAAAGAGTGTTTGTACT-GCAACCTACGGAAGCTGGCTCCTTATGC 343
|||||| |||||| | ||||||||||||| | |||||||||||||| ||||| |||||||
Sbjct 255 TGGTGTGGAATTTGCCAAGAGTGTTTGTA-TAGCAACCTACGGAAGTTGGCTTCTTATGC 313
Query 344 GAGATCCACTGTATAATCTCTATATTTTGAATCTATTCACCCACGAGAGGGTAAATCTAC 403
|||| || ||||||| | || |||||||||| ||||||| | ||||| | |||| |
Sbjct 314 AAGATTCAAAGTATAATTTATACATTTTGAATCCATTCACCAAAGAGAGTATCGATCTTC 373
Query 404 CTCCTTTCGAGTCACAACT---TGGCATGGTAAAGATTGAACGAACCATATATGATTGGT 460
| || | || ||||||| || |||||||||| |||||||||||||| ||||| | |
Sbjct 374 CGGCTGTGGAATCACAACAACCTGCCATGGTAAAGGTTGAACGAACCATAGATGAT-GAT 432
Query 461 TTCACTCTACACTC--C-ATTACAACG--GTAAGGAGT-ACCACAAACGTATTAGA-A-- 511
|| | || || || | || ||||| || | ||| | ||| ||| || | |
Sbjct 433 TTTA-TC-ACTTTCGGCGATCACAACCACGTTA--AGTTATTT-AAAGGTAATA-ATACC 486
Query 512 -TAC-TATCCACTGTGTTTTGGATCGATGAGAAAACAAAAGATTACGTAGTTATATGGGG 569
||| || || ||||||||||||| || |||||||| ||||||||| ||| | | |||||
Sbjct 487 GTACGTACCC-CTGTGTTTTGGATTGACGAGAAAACCAAAGATTACATAGCTCTGTGGGG 545
Query 570 ACTTGGA-AGTTCATGTGTGGTTTATTCCAAGAAAGGAGATAAAT-GTTGGAATCAAATT 627
|||||| | || |||||||||||| | |||||||||||||| | || |||||||||||
Sbjct 546 GCTTGGATA-TTGGTGTGTGGTTTATGCGAAGAAAGGAGATAAGTTGT-GGAATCAAATT 603
Query 628 CCAGAAACT-TCA-A-ATTGTCATCACATGGTTTACAAGGATCACAAGCTTTACTTCTCT 684
||||||| | | | ||| || | |||||||||||||||||||||||||||||| | |
Sbjct 604 CCAGAAATTATTTTAGATTCTCTTGACATGGTTTACAAGGATCACAAGCTTTACT-CA-T 661
Query 685 ACGTCTACCTACAAATATGAATT-CAGAATCTTTGATTTCTCTAGAGAGATTCCTCAACA 743
| || ||||| | | | || || |||||| ||||| ||| |||||||||||| |||
Sbjct 662 ---T-TAGCTACAGAGA-GCTTTTCACAATCTTAGATTTTTCTGGAGAGATTCCTCGACA 716
Query 744 AATCTTTCAAGGCT--ATGTCATTATGCA-AGGACTT-ACA--TTAAATCGTCATCGTGG 797
| ||||||| | | ||| ||| || | || | || | |||| || || | || |
Sbjct 717 GACCTTTCAACGTTTTATG-CATG-TGTATAG-ATTTGAGTGGTTAAGTCCTCGTAGTCG 773
Query 798 TCAACCAGGTTATCCCTT-TGCTACTAT--TGATACAAAACTTGTTGTCACAGTAACTGG 854
||||| | || || | | ||| || | ||| ||||||||||| ||||||||||| ||
Sbjct 774 TCAACTAAGTAATTCATGGTGC--CT-TGCTGAGACAAAACTTGTAGTCACAGTAACCGG 830
Query 855 AGATGTCCT-TAAGGTTGACAGAATAGTGGAGAAAGAGA-CTAGAATCTGCAGAtttttt 912
|||| ||| | |||||| ||||| || ||| || |||||||| ||| | ||
Sbjct 831 GGATGCCCTCTT-GGTTGAAAGAAT-GTTAAGACCTAGGTCTAGAATC--CAG-TCATTC 885
Query 913 tACGTCTACAAGGTTTATTCATCGGGG--TCCTATA-AGAAATATGAAAAAGTTGAATCT 969
||||||||||| ||||||| || ||| | | | | ||||||||| | || |||
Sbjct 886 AACGTCTACAAGTTTTATTCGTCAGGGAATTTTTTTGATAAATATGAACTTGCAGATTCT 945
Query 970 TTGGGGGACGAGGCAATTCTTTTGGATCTAGGTATCACTATGCTCGCCAATGACACT-GT 1028
||||| ||||||||||| |||||||||||||| |||||| ||||||||||||| | | |
Sbjct 946 TTGGGCGACGAGGCAATGCTTTTGGATCTAGGCATCACTGTGCTCGCCAATGA-AGTTGA 1004
Query 1029 GGGACTC 1035
|||||||
Sbjct 1005 GGGACTC 1011
> Ahg889961 jgi|Araly1|889961|Al_scaffold_0007_1947
Length=1095
Score = 279 bits (151), Expect = 2e-74
Identities = 310/383 (81%), Gaps = 26/383 (7%)
Strand=Plus/Plus
Query 47 ATACACCC-AATTCCTGGTCGGAGCTTCCTCTAGATCTCTTGA-CTGCAGTGTTCGAACG 104
||| |||| ||||| |||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 14 ATA-ACCCTAATTCTTGGTCGGAGCTTCCTCTAGATCTCTTGAACTT-AGTTTTCGAACG 71
Query 105 CCTCAGCTATGCAAATTTCCAACGAGCTAAATCCGTCTGTTCGTCTTGGCACTCCGGATC 164
|||||||| ||| |||||||||||||||||||| || |||||||||||| |||| | ||
Sbjct 72 CCTCAGCTTTGCTAATTTCCAACGAGCTAAATCAGTGTGTTCGTCTTGGTACTCTGCTTC 131
Query 165 GAGACAA-TCCGTTCCCATA---CAGATCCCTTGGCTGATTCTCTTCCC--G-GAATACG 217
|||||| || || || | | || |||| |||||||||||||||||| | ||| ||
Sbjct 132 CAGACAAGTC-GTGCCAAAAAATCATATCCATTGGCTGATTCTCTTCCCTCGAGAAAACA 190
Query 218 ACAACAACAA------TTCATGCACGTTGTTCAATCCCGAGGAAAAAGGCCAAGTTTACA 271
|||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 191 ACAACAACAACAAAAATTCATGCACGTTGTTCAATCCCGAGGAAAAAGAAAAACTTTACA 250
Query 272 AAATG-AA-A----GATCTTGGTGTTGAATTTTCAAAGA-GTGTTTGTACTGCAACCTAC 324
||| || | |||||||||| |||||| |||| | ||| |||| ||||||||
Sbjct 251 AAACCCAAGATTTTGATCTTGGTGAAGAATTTGCAAA-ATGTGAATGTAGGGCAACCTAT 309
Query 325 GGAAGCTGGCTCCTTATGCGAGATCCACTGTATAATCTCTATATTTTGAATCTATTCACC 384
||||| ||||| || |||| |||||| |||| ||||||||| ||| ||||||| || |||
Sbjct 310 GGAAGTTGGCTTCTAATGCAAGATCCTCTGTTTAATCTCTACATTGTGAATCTCTTTACC 369
Query 385 CACGAGAGGGTAAATCTACCTCC 407
|||||||| | ||||||| |||
Sbjct 370 AACGAGAGGATCAATCTACTTCC 392
> Ahg337411 jgi|Araly1|337411|fgenesh1_pg.C_scaffold_1003976
Length=1032
Score = 134 bits (72), Expect = 2e-30
Identities = 175/222 (79%), Gaps = 18/222 (8%)
Strand=Plus/Plus
Query 538 GAGAAAACAAAAGATTA-CGTAGTTATATGGGGACTTGGAAG-TTCATGTGTGGTTTA-T 594
|||||||| |||||||| | ||||| | |||||| || | || || ||||| |||||
Sbjct 398 GAGAAAACCAAAGATTATC-TAGTTGTTTGGGGA-TTAG-AGATTGGTGTGTAGTTTACA 454
Query 595 TCCAAGAAAGGAGATAAATGT-TGGAATCAAATTCCAG-AAACTTCAAATTGTCATCACA 652
| |||||||||||||| | | ||||| |||| ||| | |||||||| ||||| | ||||
Sbjct 455 T-CAAGAAAGGAGATACCT-TCTGGAACCAAA-TCCCGCAAACTTCAGATTGTTACCACA 511
Query 653 TGGTTTACAAGGATCACAAGCTTTACTTCTCTACGTCTACCT-ACAAATATGAATTCAGA 711
|||||||||||||||||||||||||||||| || | |||| | | ||| || | |
Sbjct 512 TGGTTTACAAGGATCACAAGCTTTACTTCT-TAAG-CTACATTATGGGTATTT-TTAA-A 567
Query 712 ATCTTTGATTTCTCTAGAGAGATTCCTCAACAAATC-TTTCA 752
||||| ||||| ||| |||||| ||| ||||||| | |||||
Sbjct 568 ATCTTCGATTTTTCTGGAGAGACTCCACAACAAA-CATTTCA 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5