BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22217.1
Length=387
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492644 jgi|Araly1|492644|fgenesh2_kg.7__2077__AT4G22217.1 436 4e-122
> Ahg492644 jgi|Araly1|492644|fgenesh2_kg.7__2077__AT4G22217.1
Length=304
Score = 436 bits (236), Expect = 4e-122
Identities = 282/304 (93%), Gaps = 3/304 (1%)
Strand=Plus/Plus
Query 1 ACAAAGAGAGATCAGCAATGAGGAGCTTGAGGTTGAGAACAGTTGTTGTTGCTACAATAG 60
|||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||
Sbjct 1 ACAAAGAGAGATCAGCAATGAGGAGCTTGAAGTTGAGAACAGTTTTTGTTGCTGCAATAG 60
Query 61 TCGTTTGTCTATCGGT-C-C-TCCTATCTCCCACCGAAGTGGATGGAAGCTGTGACTTCC 117
|||||||||| || | | | ||||||||||||| |||||||| ||||||||||||||||
Sbjct 61 TCGTTTGTCTCTCTATCCTCTTCCTATCTCCCACTGAAGTGGAGGGAAGCTGTGACTTCC 120
Query 118 CATTAGGTGCTTGTACTCCTTTCCGTGATTGCAAGGAGAGTTGCATCAAGTTCAAAACGA 177
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CATTTGGTGCGTGTACCCCTTTCCGTGATTGCAAGGAGAGTTGCATCAAGTTCAAAACGA 180
Query 178 GGGCTGGACAGACtttttttGATGGCAAGTGCCGTCCAAGGGATAGGCCGAGCGTGTGGA 237
||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||
Sbjct 181 GGGCTGGACAGACTTTTTTTGATGGCAAGTGCCGTCCGAGGGATAGACCAAGTGTGTGGA 240
Query 238 CGGCTTGTTTCTGCTGCTATTATGATAGTATCGGTGCTCAATAAGAAAACATGTGATTCC 297
||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 241 CGGCTTGCTTCTGCTGCTATTATGATAGTATCGGTGCTCAATAAGAAAGCATGCGATTCC 300
Query 298 GAAA 301
|||
Sbjct 301 AAAA 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13850478807
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5