BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G22217.1 Length=387 Score E Sequences producing significant alignments: (Bits) Value Ahg492644 jgi|Araly1|492644|fgenesh2_kg.7__2077__AT4G22217.1 436 4e-122 > Ahg492644 jgi|Araly1|492644|fgenesh2_kg.7__2077__AT4G22217.1 Length=304 Score = 436 bits (236), Expect = 4e-122 Identities = 282/304 (93%), Gaps = 3/304 (1%) Strand=Plus/Plus Query 1 ACAAAGAGAGATCAGCAATGAGGAGCTTGAGGTTGAGAACAGTTGTTGTTGCTACAATAG 60 |||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| Sbjct 1 ACAAAGAGAGATCAGCAATGAGGAGCTTGAAGTTGAGAACAGTTTTTGTTGCTGCAATAG 60 Query 61 TCGTTTGTCTATCGGT-C-C-TCCTATCTCCCACCGAAGTGGATGGAAGCTGTGACTTCC 117 |||||||||| || | | | ||||||||||||| |||||||| |||||||||||||||| Sbjct 61 TCGTTTGTCTCTCTATCCTCTTCCTATCTCCCACTGAAGTGGAGGGAAGCTGTGACTTCC 120 Query 118 CATTAGGTGCTTGTACTCCTTTCCGTGATTGCAAGGAGAGTTGCATCAAGTTCAAAACGA 177 |||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CATTTGGTGCGTGTACCCCTTTCCGTGATTGCAAGGAGAGTTGCATCAAGTTCAAAACGA 180 Query 178 GGGCTGGACAGACtttttttGATGGCAAGTGCCGTCCAAGGGATAGGCCGAGCGTGTGGA 237 ||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||| Sbjct 181 GGGCTGGACAGACTTTTTTTGATGGCAAGTGCCGTCCGAGGGATAGACCAAGTGTGTGGA 240 Query 238 CGGCTTGTTTCTGCTGCTATTATGATAGTATCGGTGCTCAATAAGAAAACATGTGATTCC 297 ||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 241 CGGCTTGCTTCTGCTGCTATTATGATAGTATCGGTGCTCAATAAGAAAGCATGCGATTCC 300 Query 298 GAAA 301 ||| Sbjct 301 AAAA 304 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13850478807 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5