BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G22220.1

Length=872
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945907 jgi|Araly1|945907|scaffold_702136.1                       1016    0.0  


> Ahg945907 jgi|Araly1|945907|scaffold_702136.1
Length=591

 Score = 1016 bits (550),  Expect = 0.0
 Identities = 578/591 (98%), Gaps = 3/591 (1%)
 Strand=Plus/Plus

Query  55   CTTCCGAAACCCTaaaaaaaaCACGATGATGCTCAAGCAAGCTGCGAAGAAGGCCCTAGG  114
            ||| |||||||||  ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  4    CTT-CGAAACCCT--AAAAAACACGATGATGCTCAAGCAAGCTGCGAAGAAGGCTCTAGG  60

Query  115  GCTTACGTCACGTCAATCAACACCGTGGTCTGTTGGTATCCTCCGAACCTACCATGAGAA  174
            ||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||
Sbjct  61   GCTTACGTCACGTCAATCAACGCCGTGGTCTGTTGGTATCTTCCGATCCTACCATGAGAA  120

Query  175  CGTCATCGACCACTACGATAATCCCCGCAACGTTGGGTCTTTCGATAAGAATGATCCCAA  234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CGTCATCGACCACTACGATAATCCCCGCAACGTTGGGTCTTTCGATAAGAATGATCCCAA  180

Query  235  CGTTGGTACGGGACTCGTAGGAGCTCCCGCTTGTGGTGATGTGATGAAGCTTCAAATCAA  294
            ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct  181  CGTTGGTACGGGACTCGTAGGAGCTCCTGCTTGTGGTGATGTCATGAAGCTTCAGATCAA  240

Query  295  GGTCGATGAGAAGACTGGTCAAATCGTTGATGCTCGCTTTAAGACTTTTGGTTGTGGTTC  354
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  241  GGTCGATGAGAAGACTGGTCAAATCGTTGATGCTCGCTTCAAGACTTTTGGTTGTGGTTC  300

Query  355  AGCCATCGCTTCTTCATCTGTTGCCACTGAATGGGTGAAAGGCAAAGCTATGGAGGATGT  414
            ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  AGCTATCGCTTCCTCATCTGTTGCCACTGAATGGGTGAAAGGCAAAGCTATGGAGGATGT  360

Query  415  TCTGACCATCAAAAACACCGAAATCGCAAAGCATCTTTCTCTCCCACCAGTCAAGCTCCA  474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  TCTGACCATCAAAAACACCGAAATCGCAAAGCATCTTTCTCTCCCACCAGTCAAGCTCCA  420

Query  475  CTGCAGTATGTTGGCGGAGGACGCTATCAAGGCAGCTGTGAAAGACTACAAGGAGAAGCG  534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  CTGCAGTATGTTGGCGGAGGACGCTATCAAGGCAGCTGTGAAAGACTACAAGGAGAAGCG  480

Query  535  TGTGAAGACAAATGGTGCTGCAGCAGCAGGAGAAACCACACAGGCTTGATTCCTTTTACT  594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  TGTGAAGACAAATGGTGCTGCAGCAGCAGGAGAAACCACACAGGCTTGATTCCTTTTACT  540

Query  595  AGTGTGTATACCATAATGTGTATATGATGGTGAAAACAGGGGAGAAGTAGA  645
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  AGTGTGTATACCATAATGTGTATATGATGGTGAAAACAGGGGAGAAGTAGA  591



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32290110699


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5