BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22235.1
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889950 jgi|Araly1|889950|Al_scaffold_0007_1936 316 9e-86
> Ahg889950 jgi|Araly1|889950|Al_scaffold_0007_1936
Length=288
Score = 316 bits (171), Expect = 9e-86
Identities = 227/253 (90%), Gaps = 7/253 (3%)
Strand=Plus/Plus
Query 126 TTGCAATAGTCGTTTGTCTCTCCATCCTCCTCATATCTCCTATAGAAGTGAATGGATGGG 185
||||| |||||||||| |||||||||||||||||||||| || ||||||| |||| ||||
Sbjct 41 TTGCAGTAGTCGTTTGCCTCTCCATCCTCCTCATATCTCTTACAGAAGTGGATGGGTGGG 100
Query 186 GAAAGTGTGACTTA-CGAAAGGGTTTATGT-AGACTCGCGGACACGATCTCTACTTGCGA 243
|||||||||| ||| ||||||||||||||| | ||| ||| ||||| ||| ||||||||
Sbjct 101 GAAAGTGTGA-TTACCGAAAGGGTTTATGTAATACT-TCGGCCACGAGCTCCACTTGCGA 158
Query 244 TGTACCATGCAGGGCAGTGGACAGCAAGTATCATGGAGGCGAATGCTTAAATGTTGGTGG 303
|| |||||||| || | |||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 159 TGAACCATGCAAGGTATTGGACAGCAAGTATCATGGAGGCGAATGTTTAAACGTTGGTGG 218
Query 304 TGGTCAAGGGATATGTTGGTGCTGCCGTGATTATGATGCTGCAAAGAGCGGTGCTGAAAA 363
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 219 TGGTCAAGGGATATGTTGGTGCTGCCGTGATTATGATGC---AAAGAGTGGTGCTGAAAA 275
Query 364 GGAAAGCATGTGA 376
||| |||||||||
Sbjct 276 GGATAGCATGTGA 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22492521030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5