BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22250.1
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492641 jgi|Araly1|492641|fgenesh2_kg.7__2074__AT4G22250.1 1448 0.0
> Ahg492641 jgi|Araly1|492641|fgenesh2_kg.7__2074__AT4G22250.1
Length=940
Score = 1448 bits (784), Expect = 0.0
Identities = 896/948 (95%), Gaps = 16/948 (2%)
Strand=Plus/Plus
Query 1 AGATCTAAACAGTTTCTCTCTCTCCCTCACAGGGCTCTCTCATGGCGGAGCTAATCTGTC 60
||||||||||||||||||||| | || | ||||| ||||||||||||||||||||
Sbjct 1 AGATCTAAACAGTTTCTCTCTATATTTCTC---TCTCTCACATGGCGGAGCTAATCTGTC 57
Query 61 TATTTCACTGGTGATTCTGTTTCACTATCTGAGAATTTGTTT-AGAGTTTCCGTTACCGA 119
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 58 TATTTCACTGGTGATTCTGTTTCACTATCGGAGAATTTCTTTAAGAGTTTCCGTTACCGA 117
Query 120 GTCGATGATGAGTGAACTCGATCTCGGAACGAGTCAGAGGATGACGGAAACACACCGCAC 179
||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||
Sbjct 118 GTCGATGATGAGTGAACTCGAGCTCGGAACGAGTCAGAGGATGGCGGAGACACACCGCAC 177
Query 180 GACGACGACGTTTCTTGATTTGCTCCGACGACAGATGAGCGGTCACGATCTCACCAGAAG 239
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 178 AACGACGACGTTTCTTGATTTACTCCGACGACAGATGAGCGGTCACGATCTCACCAGAAG 237
Query 240 GAAACGGACGTTAAAAGAACGGTTGAGATTCAAATGCATCGGATGCTGTGGTCCAACCTG 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAAACGGACTTTAAAAGAACGGTTGAGATTCAAATGCATCGGATGCTGTGGTCCAACCTG 297
Query 300 GAATCTCCGTCTAACTAAC-A-A-CACCACTCTTCACAGTCCAACCTCAAGAGACGACGA 356
|| |||||||||||||||| | | |||||||||||||||||||| |||||||||||||||
Sbjct 298 GAGTCTCCGTCTAACTAACAACACCACCACTCTTCACAGTCCAAGCTCAAGAGACGACGA 357
Query 357 AATCGAAGAGTTACAAATTGAAACCGGACTCGTTCTCGAATCGGATCATGGATCGGGTAC 416
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 358 AATCGAAGAATTACAAATTGAAACCGGACTCGTTCCCGAATCGGATCATGGATCGGGTAC 417
Query 417 GGGTATGAATCTCGCGACAGCGTTAGAAGCGGAGAGGTATAACCGTGGAGAATCGACGGA 476
|||||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||
Sbjct 418 GGGTATGAATCTCGCGACTGCGTTAGAGGCGGAGAGGTATAACAGAGGAGAATCGACGGA 477
Query 477 GGCGGAGGCAGATATGACGCCGAGGAGAGTTTCGTTGATGAGATTGTTGGAAGAGACGGC 536
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGCGGAGGTAGATATGACGCCGAGGAGAGTTTCGTTGATGAGATTGTTGGAAGAGACGGC 537
Query 537 GGAGAAAATCGTTGATGACGACGGGAAAGAAACGGAGATATTAACGGCGTCTATTGGGAC 596
||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 538 GGAGAGAATCGTTGATGAAGACGGAAAAGAAACGGAGATATTAACGGCGTCTATTGGGAC 597
Query 597 GTTAACGGGTAATGATTCGGTGTGTTGCGTGTGTATGGGAAGAAAGAAAGGCGCTGCGTT 656
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 598 GTTAACGGGTAATGATTCGGTGTGTTGCGTGTGTATGGGAAGAAAGAAAGGTGCAGCGTT 657
Query 657 TATTCCATGTGGTCATACTTTTTGCAGAGTGTGCTCTAGAGAATTGTGGCTGAACCGTGG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TATTCCATGTGGTCATACTTTTTGCAGAGTGTGCTCTAGAGAATTGTGGCTGAACCGTGG 717
Query 717 ATCGTGTCCTCTTTGTAACCGTCCGATCATTGAGATACTCGATAT-TTTCTGAAAACGAT 775
||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 718 ATCGTGTCCTCTTTGTAACCGTCCGATCATTGAGATACTAGATATCTTT-TGAAAACGAT 776
Query 776 CGGACGGCTAAAAGTTCTCGATCCACGTGAGTAAGTGAGGTGATCCCTAGATACGTTTCC 835
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 777 CGGACGGCTAAAAGTCCTCGATCCAAGTGAGTAAGTGAGGTGATCCCTAGATACGTT-CC 835
Query 836 AAAGTTTTAACTACGGTTTGTGTACTTTGTACGTTTCTTTTGGTTATTGAAGAAGATGAT 895
||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 836 AAA-TTTTAACTACGGTTTGTGTACTTTGTACGTTTCTTTTGGTTAATG--GAAGATGAT 892
Query 896 GTAAATGCAAAAAAGAA---TACAAGAGGTTTTTTGTTCACGAGGCCC 940
|||||||||||||| || ||||||||||||||||| ||| ||||||
Sbjct 893 GTAAATGCAAAAAAAAAAAATACAAGAGGTTTTTTGTCCACAAGGCCC 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34882469055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5