BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22260.1
Length=1435
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492640 jgi|Araly1|492640|fgenesh2_kg.7__2073__AT4G22260.1 1964 0.0
> Ahg492640 jgi|Araly1|492640|fgenesh2_kg.7__2073__AT4G22260.1
Length=1345
Score = 1964 bits (1063), Expect = 0.0
Identities = 1256/1347 (93%), Gaps = 22/1347 (2%)
Strand=Plus/Plus
Query 1 GCGTCGACGTCGATGGGGATGAGAAGTAGTGGAGAATCCGCTCACATTGGGA-T--TCGT 57
||||||||||||||||| ||||||||||| ||||||||| |||||||||||| | ||||
Sbjct 1 GCGTCGACGTCGATGGGCATGAGAAGTAGCGGAGAATCCTCTCACATTGGGATTCGTCGT 60
Query 58 CATTCTTCTTCTAAAACCCGCAAAAT--------T-TCTCCATTTCTACCAAAAATATCC 108
|||||||| |||||||||| |||||| | ||||||||||||| |||||| | |
Sbjct 61 CATTCTTCGTCTAAAACCCACAAAATCCCCAAAATATCTCCATTTCTACGAAAAATCTTC 120
Query 109 AACTTTTACTTTTCTTTCCTGTGAAATTATCTGCTC-AAATCTTTGGTTCCTGACGGAGA 167
||| |||||||||||||||||||||||| ||||||| ||||||| |||||||||||| ||
Sbjct 121 AACCTTTACTTTTCTTTCCTGTGAAATT-TCTGCTCAAAATCTTGGGTTCCTGACGGCGA 179
Query 168 TGGCGGCGATTTCAGGCATCTCCTCTGGTACGTTGACGATTTCACGGCCTTTGGTTACTC 227
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 TGGCGGCGATTTCAGGCATCTCCTCTGGTACGTTGACGATTTCACGACCTTTGGTTACTC 239
Query 228 TTCGACGCTCTAGAGCCGCCGTTTCGTACAGCTCCTCTCACCGATTGCTTCATCATCTTC 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 TTCGACGCTCTAGAGCCGCCGTTTCGTACAGCTCCTCTCACCGATTGCTTCATCATCGTC 299
Query 288 CTCTCTCTTCTCGTCGTCTGCTATTAAGGAACAATCATCGAGTCCAAGCAACGATTTTGC 347
|||||||||||||||||||||| || ||||||| | ||||||| ||||||||||||||||
Sbjct 300 CTCTCTCTTCTCGTCGTCTGCTCTTTAGGAACATTGATCGAGTACAAGCAACGATTTTGC 359
Query 348 AAGACGATGAAGAGAAAGTGGTGGTGGAGGAATCGTTTAAAGCCGAGACTTCTACTGGTA 407
|||| ||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct 360 AAGATGATGAAGAGAAAGTGGTGGTGGAGGAATCATTTAAAGCTGAGACTTTTACTGGTA 419
Query 408 CAGAACCACTTGAGGAGCCAAATATGAGTTCTTCTTCAACTAGTGCTTTTGAGACATGGA 467
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 420 AAGAACCACTTGAGGAGCCAAATATGAGTTCTTCTTCAAGTAGTGCTTTTGAGTCATGGA 479
Query 468 TCATCAAGCTTGAGCAAGGAGTGAATGTTTTCCTTACAGACTCGGTTATTAAGATACTTG 527
|||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||
Sbjct 480 TCATCAAGCTTGAGCAAGGAGTGAATGTCTTCCTCACAGACTCGGTGATAAAGATACTTG 539
Query 528 ACACTTTGTATCGTGACCGAACATATGCAAGGTTCTTTGTTCTTGAGACAATTGCTAGAG 587
|||| ||||| |||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 ACACATTGTACCGTGACAGAACCTATGCAAGGTTCTTTGTTCTTGAGACAATTGCTAGAG 599
Query 588 TGCCTTATTTTGCGTTTATGTCTGTGCTACATATGTATGAGACCTTTGGTTGGTGGAGGA 647
| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 TTCCTTATTTTGCCTTTATGTCTGTGCTCCATATGTATGAGACCTTTGGTTGGTGGAGGA 659
Query 648 GAGCAGATTATTTGAAAGTACACTTTGCTGAGAGCTGGAATGAAATGCATCACTTGCTCA 707
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 660 GAGCAGATTATTTGAAAGTACATTTTGCTGAGAGCTGGAATGAGATGCATCACTTGCTCA 719
Query 708 TAATGGAAGAATTGGGTGGAAATTCTTGGTGGTTTGATCGTTTTCTGGCTCAGCACATAG 767
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 720 TAATGGAAGAATTGGGTGGAAACTCTTGGTGGTTTGATCGTTTTCTGGCCCAGCACATAG 779
Query 768 CAACCTTCTACTACTTCATGACAGTGTTCTTGTATATCTTAAGCCCTAGAATGGCATATC 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CAACCTTCTACTACTTCATGACAGTGTTCTTGTATATCTTAAGCCCTAGAATGGCATATC 839
Query 828 ACTTTTCGGAATGTGTGGAGAGTCATGCATATGAGACTTATGATAAATTTCTCAAGGCCA 887
||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 ACTTTTCAGAATGCGTGGAGAGTCATGCATTTGAGACTTATGATAAATTTCTCAAGGCCA 899
Query 888 GTGGAGAGGAGTTGAAGAATATGCCTGCACCGGATATCGCAGTAAAATACTATACGGGAG 947
|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 900 GTGGAGAGGAATTGAAGAATATGCCTGCACCCGATATCGCAGTAAAATATTATACCGGAA 959
Query 948 GTGACTTGTACTTATTTGATGAGTTCCAAACATCAAGAACTCCCAATACTCGAAGACCAG 1007
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct 960 GTGACTTGTACTTATTTGATGAGTTCCAAACATCCAGAGCTCCCAATACTCGAAGGCCAA 1019
Query 1008 TAATAGAAAATCTATACGATGTGTTTGTGAACATAAGAGATGATGAAGCAGAACACTGCA 1067
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1020 TAATAGAGAATCTATACGATGTGTTTGTGAACATAAGAGACGATGAAGCAGAACACTGCA 1079
Query 1068 AGACAATGAGAGCTTGTCAGACTCTAGGCAGTCTGCGTTCTCCACACTCCATTTTAGAAG 1127
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 1080 AGACAATGAGAGCTTGTCAGACTCTGGGCAGTCTACGTTCTCCACATTCCATTTTAGAAG 1139
Query 1128 ATGATGATACTGAAGAAGAATCAGGGTGTGTTGTTCCTGAGGAGGCTCATTGCGAAGGTA 1187
||| |||| |||| ||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1140 ATGGTGATGGAGAAGGAGAATCAGGCTGTGTTGTTCCTGAGGCGGCTCATTGCGAAGGTA 1199
Query 1188 TTGTAGACTGCCTCAAGAAATCCATTACAAGTTAA--T-AA-A--TTAGAAAGTAAACTA 1241
||||||||||| ||||||||||||||||||||||| | || | |||||||||||||||
Sbjct 1200 TTGTAGACTGCATCAAGAAATCCATTACAAGTTAAAATTAATAAATTAGAAAGTAAACTA 1259
Query 1242 AAAAAGATTATTTGTATCAGCTCATGAACAATAGATAT-AATCCCATATACTTGGGAATA 1300
|||| ||||| ||||||||||||||||| ||||||||| |||||||||||||| |||| |
Sbjct 1260 AAAA-GATTAATTGTATCAGCTCATGAAGAATAGATATGAATCCCATATACTTTGGAACA 1318
Query 1301 AAGGAATAATGTGAAATTCCCATCGTT 1327
|||||||||||||||||||||||||||
Sbjct 1319 AAGGAATAATGTGAAATTCCCATCGTT 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53669155205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5