BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22270.1
Length=1639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492639 jgi|Araly1|492639|fgenesh2_kg.7__2072__AT4G22270.1 2183 0.0
> Ahg492639 jgi|Araly1|492639|fgenesh2_kg.7__2072__AT4G22270.1
Length=1532
Score = 2183 bits (1182), Expect = 0.0
Identities = 1400/1503 (93%), Gaps = 24/1503 (2%)
Strand=Plus/Plus
Query 64 CTCTCATGGCGACGAACGGATCGTCGGAGCATCTTCTCCCGGAGACGACAAGACCAAGCG 123
|||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 25 CTCTCATGGCGACGAACGCATCATCGGAGCATCTACTCCCGGAGACGACCAGACCAAGCG 84
Query 124 CGATCATCAACAAACAACAACCGGAGTTTCCTGCATCACGATTCACGTTCATGTCCCTCG 183
||||||||||| | |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 85 CGATCATCAAC--A-AACAACCGGAGTTTCCAGCATCACGGTTCACGTTCATGTCCCTCG 141
Query 184 TGCTCTGGTTCGACCAGTCAAATTTCGGTACGGCTCTGCTTTCGTGGTCCGTTTTCTTCC 243
||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||
Sbjct 142 TGCTCTGGTTCGACCAGTCAAATCACGGCACGGCTCTGCTTTCGTGGTCCGTGTTCTTCC 201
Query 244 TTCTCGTCGTCATCGTTCCTTTGATCTCTCACTTCTTGCTCGTTTGCTCCGACTGCGATT 303
||||||||||||||||||| | |||||||||||||||||||| || || ||||||||||
Sbjct 202 TTCTCGTCGTCATCGTTCCGATAATCTCTCACTTCTTGCTCGTCTGTTCAGACTGCGATT 261
Query 304 TCCATCACCGACGTCCGTACGACGTTATTGTGCAGCTTTCGTTATCGATTTTC-GCAGGA 362
||||||||||||| |||||||||| | || ||||||||||||||||||||| || |||
Sbjct 262 TCCATCACCGACGACCGTACGACGCCGTGGTACAGCTTTCGTTATCGATTTTCGGC-GGA 320
Query 363 ATCTCGTTCGTTAGCTTATCGATTTGGTCGAGAAAATTTGGGATGCGACGGTTTTTGTTC 422
||||||||||||||| | |||||||||||||| || |||||||||||||||||||||||
Sbjct 321 ATCTCGTTCGTTAGCCTCTCGATTTGGTCGAGGAAGTTTGGGATGCGACGGTTTTTGTTT 380
Query 423 CTTGATAAGCTTTGGGATGTTAGCGACAAAGTTAGAATCGAATACGAAGCTGAAATTCAG 482
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 381 CTTGATAAGCTTTGGGATGCTAGCGACAAAGTTAGGATCGAATACGAAGCTGAAATTCAG 440
Query 483 AGATCACTAAAACGGCTAATGATCTTCGTCCTCCCATCACTAACACTCGAAGCAACCTAC 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 441 AGATCACTAAAACGGCTAATGATCTTCGTCCTCCCATCACTAACACTCGAAGCAATCTAC 500
Query 543 AGAATCTGGTGGTACATCTCTGGCT-TCAACCAGATTCCTTACATCATCAATCCTATTCT 601
||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||
Sbjct 501 AGAATCTGGTGGTACATCTCTGGCTCTC-ACGAGATTCCTTACATCATCAATCCTGTTCT 559
Query 602 TAGCCACGTCGTCGCTTGCACTCTCCAGCTCTCTTCTTGGCTTTACCGTAACTCCTTATT 661
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||
Sbjct 560 TAGCCACGTCGTCGCTTGCACTCTCCAGCTATCTTCTTGGCTTTACCGTACCTCTTTATT 619
Query 662 CATCATTGTCTGCATTCTCTACAAAATCACATGTCATCTACAAACTCTTCGTCTTGATGA 721
||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 620 CATCATTGTCTGCATTCTCTACAAAATCACATGTCATCTTCAGACTCTTCGTCTCGATGA 679
Query 722 CTTCGCTCGTTGCTTCGCTTCTGAGATCACTGACGTTAGATCAGCTCTCGGCGAGCATCA 781
|||||||| |||||||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct 680 TTTCGCTCGCTGCTTCGCTTCTGAAATCACTGACGTTCGCTCAGCTCTCGGCGAGCATCA 739
Query 782 AAAGATTCGTCGTAATTTGAGGATTGTTAGTCATCGATTCAGGAGATTTATTCTTTTGTC 841
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 740 AAAGATCCGTCGTAATTTGAGGATTGTTAGTCATCGGTTCAGGAGATTTATTCTTTTGTC 799
Query 842 TTTGATTCTTGTTACTGCTACTCAGTTCATGGCTTTGCTTACTACTACGAGAGCTAGTGT 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 TTTGATTCTTGTTACTGCTACTCAGTTCATGGCTTTGCTTACTACTACGAGAGCTAGTGT 859
Query 902 TGCTGTTAATATCTATGAAGTTGGCGAACTCGCGTTATGTTCGTTGAGTTTGGTTACAGG 961
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 860 TGCTGTTAATATCTATGAAGTTGGCGAGCTCGCGTTATGTTCATTGAGTTTGGTTACAGG 919
Query 962 AGTATTCATATGTTTGAGAAGTGCAACGAAGATAACTCACAAAGCTCAATCTGTAACCAG 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 AGTATTCATATGTTTGAGAAGTGCAACGAAGATAACTCACAAAGCTCAATCTGTAACCAG 979
Query 1022 CCTTGCAGCTAAATGGAACGTTTGCGCAACAGTTGACTCGTTTGATCATCTTGATGGCGA 1081
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 980 CCTTGCAGCTAAATGGAACGTTTGCGCCACAGTTGACTCGTTCGATCATCTTGATGGCGA 1039
Query 1082 AACTCCTACTGGTTCCATTATTGAATCTCAAGTTTCCCTACGCGGCAATGCGATAGAGAC 1141
|||||||||||||||||| ||||||||||||||||||| | | ||||||||||| || ||
Sbjct 1040 AACTCCTACTGGTTCCATGATTGAATCTCAAGTTTCCCCATGTGGCAATGCGATGGATAC 1099
Query 1142 GTCTGATGATGAAGAAGGAGAAGGAGACGATGATCTCGATAATACCAAGATACATCCCAT 1201
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||
Sbjct 1100 GTCTGATGATGAAGAAGGAGAAGGAGATGACGATCTTGATAATACCAAGATACATCCGAT 1159
Query 1202 CTATGCCAATACAATTTCTTACCAAAAACGTCAAGCTCTAGTGACGTATCTAGAGAACAA 1261
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1160 TTACGCCAATACAATTTCTTACCAAAAACGTCAAGCTCTAGTGACGTATTTAGAGAACAA 1219
Query 1262 CAAAGCTGGGATCACTGTGTATGGATTCCTTGTAGATAGATCATGGTTGAATACGATTTT 1321
|||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||
Sbjct 1220 CAAAGCTGGGATCACTGTGTATGGCTTCCTTGTAGATAGGTCATGGTTGCATACGATTTT 1279
Query 1322 CGGGATTGAGCTCGCTCTTCTACTATGGTTGCTCAATAAAACAATCGTGAATATACCATG 1381
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 CGGCATTGAACTCGCTCTTCTACTATGGTTGCTCAATAAAACAATCGTGAATATACCATG 1339
Query 1382 AACAAACACTTGGTTCTTTGTAATATATGAATTGTTTTGGCATGATGTTTCTCTCCAAGA 1441
|||||| | ||||||||||| ||||||||||| |||||||||||||||
Sbjct 1340 AACAAA---T-----------AATATATGAATCGTTTTGGCATGGTGTTTCTCTCCAAGA 1385
Query 1442 TATGATGAAGAACAGTAGAGGAGATTTTTCACGGTGGTGATGATATATGTCTCTCTCCAC 1501
|||||||||||||||||||| |||||||||||||||| |||||||| |||||||||| |
Sbjct 1386 TATGATGAAGAACAGTAGAGAAGATTTTTCACGGTGGCGATGATAT--GTCTCTCTCCTC 1443
Query 1502 -TTACTTGTTTAGTTACAAATGTTGAGATACAACAACTATTTTTGGTTAATATATAGATA 1560
||| |||||||||||||||| | |||||| |||||||||||||||| || ||||||||
Sbjct 1444 CTTAGTTGTTTAGTTACAAATCTGGAGATATGACAACTATTTTTGGTTCATCTATAGATA 1503
Query 1561 TAA 1563
|||
Sbjct 1504 TAA 1506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61439565185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5