BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22280.1
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911724 jgi|Araly1|911724|Al_scaffold_0001_1978 316 2e-85
> Ahg911724 jgi|Araly1|911724|Al_scaffold_0001_1978
Length=741
Score = 316 bits (171), Expect = 2e-85
Identities = 382/479 (80%), Gaps = 33/479 (7%)
Strand=Plus/Plus
Query 526 TGGTTGAGCTGAAACTCGC-A-AGAG-GATTTTATGCCATGGTT-CCTGAT---TATGTT 578
|||||||||||||||| || | || | |||| | || || ||| |||||| |||||
Sbjct 2 TGGTTGAGCTGAAACTAGCAACAGGGAGATTCGAGGCTAT-GTTACCTGATGAGAATGTT 60
Query 579 TCTCTTCCATCGCTTAAGACTCTCTTTCTTAGTTC-CATTTGGTTCTGTAACAGGGATTG 637
||||||||||| |||||||||||||||||| | | ||||| |||| || | ||||
Sbjct 61 TCTCTTCCATCACTTAAGACTCTCTTTCTT-GAGCGGATTTGTTTCTACAATACTGATTT 119
Query 638 TTGCCCTTTGGGAAGGCTTCTTTCTGCTTGC-CCTGTGCTTGAGGAATTAACCATT-ATT 695
||| |||||||| |||||||| ||||| | ||| ||||||||||||| |||||| ||
Sbjct 120 TTGTGTTTTGGGAAAGCTTCTTTTTGCTT-CTCCTTTGCTTGAGGAATTTACCATTCGTT 178
Query 696 G-G-TGGGTGCTGGCAACATAT-AGAATT-TTGTCGCACCGTCTCCTCTTCGACCCTTAA 751
| | |||| |||||| | |||| || || || |||| ||||||||||| || || ||
Sbjct 179 GTGTTGGGAGCTGGC-A-ATATGGGAGTTGCTGCCGCAATGTCTCCTCTTCCACACTAAA 236
Query 752 GAAACTTACTATTACGTCTTCTTTTCA-CTATGAATATTGGGGCATCAC-TATCGATACA 809
|||||||||||| |||| || ||| || ||| | ||||| ||| | | | |||||
Sbjct 237 GAAACTTACTATCGTGTCTACTCCTCAGCT-TGATTTTTGGGACAT-GCTTTTTGATACT 294
Query 810 CCGAGTCTTGCCTACTTAGAATACTCTGATCTAGTTCCAAGACACTTTCCGTTTGTGAAT 869
|||| ||||||||||||||||||| ||| | ||||||||||| | | ||| |||||||
Sbjct 295 CCGAATCTTGCCTACTTAGAATACACTGGTTTAGTTCCAAGAGAATATCCAACTGTGAAT 354
Query 870 CTTGAATCCCTTGTCGAAGCTAAGCTCGCTCTT-GATCTATGTTCT-G--AT-AGCAATC 924
|||||||||||||||||||||||||| | |||| | | | ||| || | || |||||||
Sbjct 355 CTTGAATCCCTTGTCGAAGCTAAGCTTGATCTTAGTTTT-TGT-CTTGGTATCAGCAATC 412
Query 925 CAACAAATCTGATTAAGGGGTTAA-GAAATGTTGAGGTCTTGGAGTTATCATCTGGTTA 982
|||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| |||
Sbjct 413 CAACAAATCTGATTAAGGGGTTAACGAA-TGTTGAGGTCTTAGAGTTATCATCTG-TTA 469
Score = 303 bits (164), Expect = 2e-81
Identities = 221/247 (89%), Gaps = 9/247 (4%)
Strand=Plus/Plus
Query 1135 TCA-AGGGTCCATTGTC-CGCTGATAG-ATATGAACGAGAATATGGATTGTCATGTCCTG 1191
||| ||||||||||| | ||||||| | || |||| ||||||||||||||||||||||||
Sbjct 475 TCAGAGGGTCCATTG-CACGCTGAT-GAATGTGAAGGAGAATATGGATTGTCATGTCCTG 532
Query 1192 TGAAAGTATTGGAGATAACTGAGTATGGAGGAAAATA-TGAAGAGCTAGAGCAAATGGAA 1250
||||||||||| ||||||||||||||||||||||| | || ||||||| ||| |||| ||
Sbjct 533 TGAAAGTATTGAAGATAACTGAGTATGGAGGAAAA-AGTGGAGAGCTAAAGCGAATGAAA 591
Query 1251 CATTT-CTTAAAGAAACTGCCATGTCTTGAGCTTGTCAAAGTTCGTGCTTCTGCAATAAA 1309
|| || || | |||| ||| |||||||||||||||||||||||||||||| |||||| ||
Sbjct 592 CACTTACT-AGAGAAGCTGTCATGTCTTGAGCTTGTCAAAGTTCGTGCTTGTGCAATTAA 650
Query 1310 CGACAAGGAAAAGTCTCGTATCACCAAAGATCTGCTAATGGTTCCTAGATCGTCCAATTG 1369
|||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 651 CGACAAAGAAAAGTCTCGAATCACCAAAGATCTGCTAATGGTTCCTAGATCGTTCAATTG 710
Query 1370 CAATATC 1376
||| |||
Sbjct 711 CAACATC 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55345125985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5