BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22290.1
Length=1718
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492638 jgi|Araly1|492638|fgenesh2_kg.7__2071__AT4G22290.1 2632 0.0
Ahg895488 jgi|Araly1|895488|Al_scaffold_0006_3484 922 0.0
> Ahg492638 jgi|Araly1|492638|fgenesh2_kg.7__2071__AT4G22290.1
Length=1684
Score = 2632 bits (1425), Expect = 0.0
Identities = 1619/1709 (95%), Gaps = 28/1709 (2%)
Strand=Plus/Plus
Query 13 tctctctcttctgaagcactcaaagagtaaagtttctctgcatttcagcttctctctctc 72
||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 1 TCTCTCTCTTCTGAAGCACTCAAAGAGTAAAGTTTCTCTGCATTTTAG---CT-TCTCTC 56
Query 73 ttctctctGTAGAAATGGCGGGTCGGATCCAATCCCACCAGCTACCAAATGGACTCTACG 132
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 -TCTCTC--TAGAAATGGCGGGTCGGATCCAATCCCACCAGCTACCAAATGGACTCTACG 113
Query 133 TATCGGGAAAGCTTGAGCAACCAAAAGAGCGACCACCGACAATGGCGGCTCGAGCTGTGC 192
||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 114 TATCGGGTAAGCTCGAGCAACCAAAAGAACGACCACCGACAATGGCGGCTCGAGCTGTGC 173
Query 193 CTTACACCGGAGGCGACATCAAGAAATCCGGCGAGCTCGGAAGGATGTTCGACATCTCCG 252
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 CTTACACCGGAGGCGATATCAAGAAATCCGGCGAGCTCGGAAGGATGTTCGACATCTCCG 233
Query 253 TCGTCGATTCAGCTTCTTTTCAAGGACCACCGCCGTTAATCGTCGGTGGTAATAGCAGCG 312
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TCGTCGATTCGGCTTCTTTTCAAGGACCACCGCCGTTAATCGTCGGTGGTAATAGCAGCG 293
Query 313 GAGGTA-CGTCAAGGCTTCAGGCGCCGCCACGTGTCTCCGGTTCTTCTTCAAACCCTAAC 371
|||| | | ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 294 GAGG-AGCATCAAGGCTTCAGGCGCCGCCACGCGTCTCCGGTTCTTCTTCAAACCCTAAC 352
Query 372 AGTGGATCCGTTCGATCTGGTCCCAACTCTGGTTCGGTTAAGAAATTCTCAGGTCCACTC 431
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 353 AGTGGATCCGTTCGATCTGGTCCCAACTCCGGTTCGGTTAAGAAATTCTCAGGTCCACTC 412
Query 432 TCTCAGCTTCAGCCAACCGGTTTAATTACCTCCGGTTCTCTTGGTTCTTCGGGTCCAATT 491
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 413 TCTCAGCTTCAGCCAACCGGTTTAATTACCTCCGGTTCTCTCGGTTCTTCGGGTCCAATT 472
Query 492 TTGTCCGGGTCTAGAAGGTCGGGTCAATTGGATCACCAATTGAGTAATCTAGCGTCGAGC 551
|| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 473 TTATCCGGGTCTAGAAGGTCGGGTCAATTGGATCACCAGTTGAGTAATTTAGCGTCGAGC 532
Query 552 AAGCCTAAATACGGGTCGTCGGTGACGAGTCTTAACGTAGACCCGGTTCGGGTCGGGTTT 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 AAGCCTAAATACGGGTCGTCGGTGACGAGTCTTAACGTAGACCCGGTTCGGGTCGGGTTT 592
Query 612 AAAGTACCAAAAGCAATGGTTTGGGCGGTTTTGATAGTGGCGGCGATGGGATTGCTTGTG 671
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 593 AAAGTACCAAAAGCGATGGTTTGGGCGGTTTTGATTGTGGCGGCGATGGGATTGCTTGTT 652
Query 672 GGAGCTTTTCTTACTGTGGCGGTGAAGAAACCGGTGGTGATTGCTGCGGTTTTAGCAGCA 731
||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 653 GGAGCGTTTCTTACCGTGGCGGTGAAGAAACCGGTGGTGATTGCAGCGGTTTTAGCGGCG 712
Query 732 GTTTGTCCTGCAATCGTGGTTTTGGTTTGGAATTGCGTTTGGAGAAGAAAAGGGTTGTTG 791
|||||||| ||||||||||||||| ||||||||||||||||||||||||| || || |||
Sbjct 713 GTTTGTCCCGCAATCGTGGTTTTGATTTGGAATTGCGTTTGGAGAAGAAACGGATTATTG 772
Query 792 AGTTTTATCAAAAAGTATCCAGATGCTGAGCTTAGAGGTGCCATTGATGGACAATTCGTT 851
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 773 AGTTTCATCAAAAAGTATCCAGATGCTGAGCTTAGAGGCGCCATTGATGGACAATTCGTC 832
Query 852 AAGGTTACAGGGGTTGTGACATGTGGAAGCATTCCTTTGGAATCTTCGTTCCAAAGAACA 911
|| |||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 833 AAAGTTACAGGGGTTGTGACATGTGGAAGCATTCCTTTGGAGTCTTCATACCAAAGAACA 892
Query 912 CCAAGATGCGTTTATGTATCCACGGAGTTGTATGAATACAAAGGTTTTGGTGGGAAATCC 971
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 893 CCAAGATGTGTTTATGTATCCACGGAGTTGTATGAGTACAAAGGTTTTGGTGGGAAATCC 952
Query 972 GCAAACCCAAAACATCGATGCTTTTCTTGGGGATCTAGACATGCAGAGAAATATGTGTCG 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 GCAAACCCAAAACATCGATGCTTTTCTTGGGGATCTAGACATGCAGAGAAATATGTGTCG 1012
Query 1032 GATTTTTACATCTCGGATTTCCAATCTGGATTGCGAGCACTAGTAAAAGCAGGATATGGA 1091
|| ||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1013 GACTTTTACATCTCAGATTTCCAATCTGGATTGCGGGCGCTAGTAAAAGCTGGATATGGA 1072
Query 1092 TCAAAAGTTTCTCCTTTTGTCAAACCGGCGACAGTGGCTAATGTAACAACGCAGAACAAA 1151
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TCAAAAGTTTCTCCTTTTGTTAAACCGGCGACAGTGGCTAATGTAACAACGCAGAACAAA 1132
Query 1152 GATTTATCTCCCAGCTTCTTAAAGTGGCTGTCAGATCGCAACCTCTCAGCTGATGACCGT 1211
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1133 GATTTGTCTCCCAGCTTCTTAAAGTGGCTGTCGGATCGCAACCTCTCAGCCGATGACCGT 1192
Query 1212 GTTATGCGTCTCAAAGAAGGATACATAAAAGAAGGAAGCACAGTGAGCGTGATGGGGATG 1271
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1193 GTCATGCGCCTCAAAGAAGGATATATAAAAGAAGGAAGCACAGTGAGCGTGATGGGGATG 1252
Query 1272 GTAAGAAGGCACGACAACGTTCTGATGATAGTTCCTCCGGCAGAAGCAGTCTCCAGTGGG 1331
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1253 GTGAGAAGACACGACAACGTGCTGATGATAGTTCCTCCGGCAGAAGCAGTCTCCAGTGGG 1312
Query 1332 TGCCGGTGGTGGCACTGCCTCTTCCCAACCTACGCAGATGGCTTAATCATAACCTGCGAC 1391
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 1313 TGCCGGTGGTGGCACTGCCTCTTCCCAACCTATGCAGATGGCTTAATCATCACCTGTGAC 1372
Query 1392 GATAATCAAAACGCTGATGTCATTCCTGTCTGAAACCAATATGTATGTAATGCTTCTTTT 1451
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1373 GATAATCAAAACGCTGATGTCATTCCTGTCTGAA-CCAATATGTATGTAATGCTCCTTTT 1431
Query 1452 GCCCGATATTCAAATATAAAAATGCTTAAACAGTTAGGCTCACgagactgaaggaaggaa 1511
|||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 1432 GCCCAATATTCAAATATATAAATGCTTAAAGAGTTAGGCTCACGAGACTGAAGGAAG-A- 1489
Query 1512 gagaagagaagagaagagagggaatgagaggaCAGCCAAATTGGTTCAAAAA-GAAAACC 1570
|| | |||| | | || |||||||||||||||||||||||||||| |||||||
Sbjct 1490 GA-A-GAGA-G-G--GA-------TGAGAGGACAGCCAAATTGGTTCAAAAAAGAAAACC 1536
Query 1571 AAATAGGctttgccttttaccttattagcttttgtttttctttcttaattctgttttttt 1630
|||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1537 AAATGGGCTTTGCCTTTTGCCT-ATTAGCTTTTGTTTTTCTTTCTTAATTCTGTTTTTTT 1595
Query 1631 ttttt-GCCCCTTGTATGGGGTTTATGTTTGTGTACATAGAGCCCCAAAGTGTAAATGCT 1689
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 TTTTTTGCCCCTTCTATGGGGTTTATGTTTGTGTACATAGAGCCCCAAAGTGTAAATGCT 1655
Query 1690 CTTTTCTGTTAAAATAATTATTATGTCCT 1718
||||||||| ||||||||||||||||||
Sbjct 1656 ATTTTCTGTTTAAATAATTATTATGTCCT 1684
> Ahg895488 jgi|Araly1|895488|Al_scaffold_0006_3484
Length=1335
Score = 922 bits (499), Expect = 0.0
Identities = 1098/1377 (80%), Gaps = 81/1377 (6%)
Strand=Plus/Plus
Query 87 ATGGCGGGTCGGA-TCCAATCCCACCAGCTACCAAATGGACTCTACGTATC-GGGAAAGC 144
|||||||||| || | ||||| ||||| |||||| |||||||||||| || || ||| |
Sbjct 1 ATGGCGGGTC-GACTACAATCTCACCAATTACCAAGTGGACTCTACGTTTCAGGTAAA-C 58
Query 145 TTGAGCAACCAAAAGAGCGACCACCGACAATGGCGGCTCGAGCTGTGCCTTACACCGGAG 204
| || ||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 59 TCGAACAACCCAAAGAACGACCACCGACAATGGCGGCTCGTGCTATGCCTTACACCGGAG 118
Query 205 GCGACATCAAGAAATCCGGCGAGCTCGGAAGGATGTTCGACATCTCCGTC-GTCGAT-TC 262
|||| ||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 119 GCGATATCAAGAAATCCGGCGAGCTCGGAAGGATGTTCGACATCTCCGTCAAT-GATCCC 177
Query 263 AGCTTCTTTTCAAGGACCACCGCCG-TTAATCGT-CGGTGGTAATAGCAGCGGAGGTACG 320
| | || |||||| |||| ||| || || || | ||| | ||| |||| || |
Sbjct 178 A-CCTCGTTTCAAAGACCTCCGTCGATT-TTC-TCCGG-CG-AAT--CAGC-----TA-G 224
Query 321 TCAAGGCTTCAGGCGCCGCCACGTGT---CTCCGGTTCTTCTTCAAACCCTAACAGTGGA 377
| | || | | | ||||||||||| ||||| ||| ||||| || || || ||||||
Sbjct 225 AC-A-GCCACCGCCACCGCCACGTGTCCCCTCCGCTTCGTCTTCGAATCCGAATAGTGGA 282
Query 378 TCCGTTCGATCTGG-TCCCAACTCTGGTTC-GGTTAAGAAATTC-TCAGGTCCACTCTCT 434
||||||||||| || || ||| || || || || ||||| || |||||||| || ||
Sbjct 283 TCCGTTCGATCCGGATCTCAA-TC-GGGTCTAATT-AGAAAATCTTCAGGTCCTCTTTCA 339
Query 435 CAGCTTCAGCCAACCGGTTTAATTACCTCCGGTTCTCTTGGTTCTTCGGGTCCAATTTTG 494
|||||||| || ||||||||||| ||||||||| | ||| ||| || ||||||||| |
Sbjct 340 CAGCTTCAACCCACCGGTTTAATCACCTCCGGTCCGCTTAATTCGTCCGGTCCAATTGGG 399
Query 495 TCCGGGTCTAGAAGGTCGGGTCA-ATTGGAT---CA-C--CAATTGAGTAAT-CTAGCGT 546
|||||||| |||||||||||||| ||| ||| || | ||| ||||||| | || |
Sbjct 400 TCCGGGTCAAGAAGGTCGGGTCAGATT-GATCAACATCATCAAACGAGTAATACAAG-AT 457
Query 547 CGAGCAAGCCTAAATACGGGTCGTCGGTGACGAGTCTT-AACGT-AGACCCGGTTCGGGT 604
||||||| || ||||| || ||| |||| ||| || || || | || ||| |||||||
Sbjct 458 CGAGCAAACCCAAATATGGATCGGCGGTTACG-GTTTTGAA-TTCGGATCCGATTCGGGT 515
Query 605 CGGGTTTAAAGTACCAAAAGCAATGGTTTGGGCGGT-TTTGATAGTGGC-GGCGATGGGA 662
|||||||| |||||||||||| || ||||||| || ||| |||| || || ||||||
Sbjct 516 CGGGTTTAGAGTACCAAAAGCTGTGATTTGGGCAGTGATTG-TAGTTGCAGG-GATGGGT 573
Query 663 TTGCTTGTGGGAGCTTTTCTTA-CTGTGGCGGTGAAGAAACCGGT-GGTGATTGCT-GCG 719
|| || | || || ||| ||| |||||||||||||||| || | | || || | | |
Sbjct 574 TTACTAATTGGTGCGTTT-TTATCTGTGGCGGTGAAGAAGCCATTAGTTG--TGGTGGTG 630
Query 720 GTTTTAGCAG-CAGTTTGTCCTGCAATCGTGGTTTTGGTTTGGAATTGCGTTTGGAGAAG 778
|| | || | || ||| ||| || |||||||||| || |||||||| ||||||||||
Sbjct 631 ATTGTGGCGGCCA-TTTTTCCGGCCGTCGTGGTTTTTGTGTGGAATTGTATTTGGAGAAG 689
Query 779 AAAAGGGTTGTTGAGTTTTATCAAAAAGTATCCAGATGCTGAGCTTAGAGGTGCCATTGA 838
|| |||||| || |||| ||||| || ||||||||||||| | ||||||| ||||||||
Sbjct 690 AAGAGGGTTAATGGGTTTCATCAAGAATTATCCAGATGCTGTGATTAGAGGCGCCATTGA 749
Query 839 TGGACAATTCGTTAAGGTTACAGGGGTTGTGACATGTGGAAGCATTCC-TTTGGAATCTT 897
|||||| ||| | ||||| ||||||||||| ||||||||||| || || || || || |
Sbjct 750 TGGACAGTTCATCAAGGTCACAGGGGTTGTAACATGTGGAAGTATCCCGCTT-GAGTCGT 808
Query 898 CGTTCCAAAGAACACCAAGATGCGTTTATGTATCCACGGAGTTGTATGAATACAAAGGTT 957
| | |||||| | ||| ||||| ||||||||||| ||||| |||||||| ||||||||||
Sbjct 809 CATACCAAAGGATACCGAGATGTGTTTATGTATCGACGGAATTGTATGAGTACAAAGGTT 868
Query 958 TTGGTGGGAAATCCGCAAACCCAAAACATCGATGCTTTTCTTGGGGAT-CTAGACATGCA 1016
|| ||||||||||||| ||| |||||| |||| ||||| ||||||| | ||||||||
Sbjct 869 TTTGTGGGAAATCCGCTAACTTGAAACATAGATGTTTTTCGTGGGGATGC-AGACATGCT 927
Query 1017 GAGAAATATGTGTCGGATTTTTACATCTCGGA-TTTCCAATCTGGATTGCGAGCACTAGT 1075
|||| |||||| |||||||||||||| ||||| ||| ||||| |||||||||||||| ||
Sbjct 928 GAGAGATATGTATCGGATTTTTACATTTCGGACTTT-CAATCCGGATTGCGAGCACTTGT 986
Query 1076 AAAAGCAGGATATGGATCAAAAGTTTCTCCTTTTGTCAAACCGGCGACAGTGGCTAATGT 1135
||||||||||||||||||||||||||||| |||||||||| | ||||| ||||||||
Sbjct 987 TAAAGCAGGATATGGATCAAAAGTTTCTCCAATTGTCAAACCAACAACAGTAGCTAATGT 1046
Query 1136 AACAACGCAGAAC-AAAGATTTATCTCCCAGC-TTCTTA-AAGTGGCT-GTCAGATCGCA 1191
||| | || ||| || ||||||||||| ||| ||| || || ||| | | | |||||||
Sbjct 1047 AACCTCACA-AACTAAGGATTTATCTCCAAGCTTTC-TACAA-TGGTTAG-CGGATCGCA 1102
Query 1192 ACCTCT-CAGCTGATGACCGTGTTATGCGTCTCAAAGAAGGATACATAAAAGAAGGAAGC 1250
|||| | || | ||| || ||| |||||||||||||||||||||||||||||||| |||
Sbjct 1103 ACCTTTCCAAC-GATAACTGTGCCATGCGTCTCAAAGAAGGATACATAAAAGAAGGGAGC 1161
Query 1251 ACAGTGAGCGTGATGGGGATGGTAAGAAGGCACGACAACGTTCTGATGAT-AGTTCCTCC 1309
|| || ||||||||||| ||||| || | |||||||| ||||||||||| | |||||||
Sbjct 1162 ACCGTAAGCGTGATGGGAATGGTGAGGCGACACGACAATGTTCTGATGATCA-TTCCTCC 1220
Query 1310 GGCAGAAGCAGTCTCCAGTGGGTGCCGGTGGTGGCACTGCCT-CTTCCCAACCTACGCAG 1368
|| ||| || || ||| ||| ||| ||||||| ||||| || |||||| || | |
Sbjct 1221 TGCCGAATCAATCGCCACTGGCTGCAAATGGTGGCGTTGCCTTCT-CCCAACTTATGTGG 1279
Query 1369 ATGGC-TTAATCATAACCTGCGACGATAATCAAAACGCTGATGTCATTCCTGTCTGA 1424
||||| ||| |||| || || || || || ||||| |||||||||||||||||||||
Sbjct 1280 ATGGCCTTA-TCATTACTTGTGATGAGAACCAAAATGCTGATGTCATTCCTGTCTGA 1335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64448694540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5