BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22300.1
Length=1064
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492637 jgi|Araly1|492637|fgenesh2_kg.7__2070__AT4G22300.1 1583 0.0
Ahg951560 jgi|Araly1|951560|scaffold_803447.1 558 2e-158
Ahg354569 jgi|Araly1|354569|fgenesh1_pg.C_scaffold_7001742 322 3e-87
Ahg354574 jgi|Araly1|354574|fgenesh1_pg.C_scaffold_7001747 316 2e-85
Ahg951802 jgi|Araly1|951802|scaffold_17700001.1 130 2e-29
> Ahg492637 jgi|Araly1|492637|fgenesh2_kg.7__2070__AT4G22300.1
Length=1880
Score = 1583 bits (857), Expect = 0.0
Identities = 1006/1074 (94%), Gaps = 25/1074 (2%)
Strand=Plus/Plus
Query 1 ATCGATCTCGAGAG-AAAATGGTGAAGGCATGCGAAC-A--AGTAGACTGAAGAAGCCGA 56
||||||||| | || |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 812 ATCGATCTCCAAAGAAAAATGGTGAAGGCATGCGAACAAGTAGTAGACTGAAGAAGCCGA 871
Query 57 TTGTTCTTCTCACTATCGCACTATTGAGCTCTGTCTTCTTCTTCGCATTCTTCTTCCTAA 116
| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 872 TCGTTCTTCTCACTATCGCACTATTGAGCTCTGTCTTCTTCTTCGTAATCTTCTTCCAAA 931
Query 117 ACAAATCTGACGTATCATCTACCTCT-G--------C-T-TT-ACGGAACCGAGACTCCA 164
||||||||||| |||||||||||||| | | | || |||||||| ||||||||
Sbjct 932 ACAAATCTGACTTATCATCTACCTCTGGTATCACATCTTCTTCACGGAACCCAGACTCCA 991
Query 165 TGGCTCGAACCTTCATCTTATGGCTTCACGGGCTAGGTGATTCCGGACCTGCCAACGAAC 224
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 992 TGGCTCGAACCTTCATCTTATGGCTTCACGGGCTTGGTGATTCCGGACCTGCCAACGAAC 1051
Query 225 CCATCAAAACACTTTTCAGGTC-CCAGGAGTTTAGAAACACTAAGTGGCTCTTCCCTTCT 283
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1052 CCATCAAAACACTTTTCAGGTCACC-GGAGTTTAGAAACACTAAGTGGCTCTTCCCTTCT 1110
Query 284 GCTCCACCAAATCCAGTCTCTTGCAATTATGGTGCAGTGATGCCTTCTTGGTTTGACATC 343
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1111 GCTCCACCAAATCCAGTCTCTTGCAATTATGGTGCAGTGATGCCTTCGTGGTTTGACATC 1170
Query 344 CCTGAGCTTCCTCTTACTGCGGGATCTCCGAAAGATGAAAGCAGTTTGCTTAAAGCAGTT 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 CCTGAGCTTCCTCTTACTGCGGGATCTCCGAAAGATGAAAGCAGTTTGCTTAAAGCAGTT 1230
Query 404 AAGAACGTTCATGCCATTATAGATAAGGAGATTGCAGGAGGAATCAATCCAGAAAATGTG 463
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 ACGAACGTTCATGCCATTATAGATAAGGAGATTGCAGGAGGAATCAATCCAGAAAATGTG 1290
Query 464 TATATCTGTGGATTTAGCCAAGGAGGTGCATTAACCTTGGCGAGTGTTCTTCTTTACCCT 523
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1291 TATATCTGTGGATTTAGCCAAGGAGGTGCATTAACCTTGGCTAGTGTTCTTCTTTACCCT 1350
Query 524 AAAACTATTGGAGGAGGTGCAGTCTTTAGCGGATGGATTCCATTCAATTCTTCGATCACC 583
||| || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1351 AAAGCTCTTGGAGGAGGTTCAGTCTTTAGCGGATGGATTCCATTCAATTCTTCAATCACC 1410
Query 584 AATCAGTTTACCGAAGATGCTAAAAAGACACCAATCTTGTGGTCTCATGGCATTGATGAC 643
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 AATCAGTTTAGCGAAGATGCTAAAAAGACACCAATCTTGTGGTCTCATGGCATTGATGAC 1470
Query 644 AAGACTGTACTATTCGAAGCTGGTCAAGCAGCTCTTCCTTTTCTTCAACAAGCGGGTGTG 703
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1471 AAGACTGTGCTATTCGAAGCTGGTCAAGCAGCTCTTCCTTTTCTTCAACAAGCTGGTGTG 1530
Query 704 ACTTGTGAATTCAAGGCTTATCCGGGTCTTGGACACTCAATCAGTAATGAGGAGCTGCAG 763
||||||||||||||||| ||||| | |||||||||||||||||||||| ||||||||||
Sbjct 1531 ACTTGTGAATTCAAGGCGTATCCTGATCTTGGACACTCAATCAGTAATAAGGAGCTGCAA 1590
Query 764 TATCTGGAGTCATGGTTAAAACAACGGATGCAGAGCTCTTCTTCTTCTTCATAAAATGGT 823
||| |||||| |||| | ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1591 TATTTGGAGTTATGGATCAAACAACGGATGCAGAGCTCTTCGTCTTCTTCTTAAAATGGT 1650
Query 824 TTTTAAAGGCAACTTTGTACTCAAGGTAACAACATCCTAGTACCTATCAAGATTAGAAGA 883
|| ||||||||| ||||||||||||||| ||||||||| | |||| |||||||||||||
Sbjct 1651 ATTAAAAGGCAACATTGTACTCAAGGTAATAACATCCTATTGCCTA-CAAGATTAGAAGA 1709
Query 884 AAAATGATAACATCAGCTCATCTCTGGTCCAAGTTTCTCTATCATGAAAACCGGTTCT-G 942
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | |
Sbjct 1710 AAAATGATAACATCAGCTCATCTCTGGTCCA-GTTTCTCTATAATGAAAACCGGTTTTTG 1768
Query 943 GTTGAACCAATCTTGTTTGGTTATGTAAACCGTTACTTTTGTTAACTACAA--CATTTTG 1000
||| || | |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1769 GTTTAATCG-TCTTGTTTGGTTATGTAAACGGTTACTTTTGTTAACTACAAAACATTTTG 1827
Query 1001 CGTACTTTGCATTGATTTGAAAAATTATATGTCAACACTAGAATTCTTTTATTT 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 T-TACTTTGCATTGATTTGAAAAATTATATGTCAACACTAGAATTCTTTTATTT 1880
> Ahg951560 jgi|Araly1|951560|scaffold_803447.1
Length=534
Score = 558 bits (302), Expect = 2e-158
Identities = 339/357 (95%), Gaps = 2/357 (1%)
Strand=Plus/Plus
Query 364 GGGATCTCCGAAAGATGAAAGCAGTTTGCTTAAAGCAGTTA-AGAACGTTCATGCCATTA 422
||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 102 GGGATCTTCGAAAGATGAAAGCAGTTTGCTTAAAGCAGTTACA-AACGTTCATGCCATTA 160
Query 423 TAGATAAGGAGATTGCAGGAGGAATCAATCCAGAAAATGTGTATATCTGTGGATTTAGCC 482
|||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 161 TAGATAAGGAAATTGCAGGAGAAATAAATCCAGAAAATGTGTATATCTGTGGATTTAGCC 220
Query 483 AAGGAGGTGCATTAACCTTGGCGAGTGTTCTTCTTTACCCTAAAACTATTGGAGGAGGTG 542
||||||||||||||||| |||| ||||||||||||||||||||| || |||||||||||
Sbjct 221 AAGGAGGTGCATTAACCCTGGCTAGTGTTCTTCTTTACCCTAAAGCTCTTGGAGGAGGTT 280
Query 543 CAGTCTTTAGCGGATGGATTCCATTCAATTCTTCGATCACCAATCAGTTTACCGAAGATG 602
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 281 CAGTCTTTAGCGGATGGATTCCATTCAATTCTTCAATCATCAATCAGTTTACCGAAGATG 340
Query 603 CTAAAAAGACACCAATCTTGTGGTCTCATGGCATTGATGACAAGACTGTACTATTCGAAG 662
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 341 CTAAAAAGACACCAATCGTGTGGTCTCATGGCATTGATGACAAGACTGTACTATTTGAAG 400
Query 663 CTGGTCAAGCAGCTCTTCCTTTTCTTCAACAAGCGGGTGTGACTTGTGAATTCAAGG 719
|||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct 401 CTGGTCAAGCAGCTCTTCCTTTTCTTCAACAAGCTGGTATGACTTGTGAATTAAAGG 457
> Ahg354569 jgi|Araly1|354569|fgenesh1_pg.C_scaffold_7001742
Length=1602
Score = 322 bits (174), Expect = 3e-87
Identities = 197/208 (95%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 365 GGATCTCCGAAAGATGAAAGCAGTTTGCTTAAAGCAGTTA-AGAACGTTCATGCCATTAT 423
|||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 157 GGATCTTCGAAAGATGAAAGCAGTTTGCTTAAAGCAGTTACA-AACGTTCATGCCATTAT 215
Query 424 AGATAAGGAGATTGCAGGAGGAATCAATCCAGAAAATGTGTATATCTGTGGATTTAGCCA 483
||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 216 AGATAAGGAAATTGCAGGAGAAATAAATCCAGAAAATGTGTATATCTGTGGATTTAGCCA 275
Query 484 AGGAGGTGCATTAACCTTGGCGAGTGTTCTTCTTTACCCTAAAACTATTGGAGGAGGTGC 543
|||||||||||||||| |||| ||||||||||||||||||||| || ||||||||||| |
Sbjct 276 AGGAGGTGCATTAACCCTGGCTAGTGTTCTTCTTTACCCTAAAGCTTTTGGAGGAGGTTC 335
Query 544 AGTCTTTAGCGGATGGATTCCATTCAAT 571
||||||||||||||||||||||||||||
Sbjct 336 AGTCTTTAGCGGATGGATTCCATTCAAT 363
> Ahg354574 jgi|Araly1|354574|fgenesh1_pg.C_scaffold_7001747
Length=1230
Score = 316 bits (171), Expect = 2e-85
Identities = 196/208 (94%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 365 GGATCTCCGAAAGATGAAAGCAGTTTGCTTAAAGCAGTTA-AGAACGTTCATGCCATTAT 423
|||||| ||||||||||||||||||||||||||||||||| | ||||||||| |||||||
Sbjct 106 GGATCTTCGAAAGATGAAAGCAGTTTGCTTAAAGCAGTTACA-AACGTTCATACCATTAT 164
Query 424 AGATAAGGAGATTGCAGGAGGAATCAATCCAGAAAATGTGTATATCTGTGGATTTAGCCA 483
||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 165 AGATAAGGAAATTGCAGGAGAAATAAATCCAGAAAATGTGTATATCTGTGGATTTAGCCA 224
Query 484 AGGAGGTGCATTAACCTTGGCGAGTGTTCTTCTTTACCCTAAAACTATTGGAGGAGGTGC 543
|||||||||||||||| |||| ||||||||||||||||||||| || ||||||||||| |
Sbjct 225 AGGAGGTGCATTAACCCTGGCTAGTGTTCTTCTTTACCCTAAAGCTCTTGGAGGAGGTTC 284
Query 544 AGTCTTTAGCGGATGGATTCCATTCAAT 571
||||||||||||||||||||||||||||
Sbjct 285 AGTCTTTAGCGGATGGATTCCATTCAAT 312
> Ahg951802 jgi|Araly1|951802|scaffold_17700001.1
Length=371
Score = 130 bits (70), Expect = 2e-29
Identities = 80/85 (94%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 487 AGGTGCATTAACCTTGGCGAGTGTTCTTCTTTACCCTAAAACTATTGGAGGAGGTGCAGT 546
||||||||||||| |||| ||||||||||||||||||||| || ||||||||||| ||||
Sbjct 108 AGGTGCATTAACCCTGGCTAGTGTTCTTCTTTACCCTAAAGCTCTTGGAGGAGGTTCAGT 167
Query 547 CTTTAGCGGATGGATTCCATTCAAT 571
|||||||||||||||||||||||||
Sbjct 168 CTTTAGCGGATGGATTCCATTCAAT 192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39609710763
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5