BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22310.1
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492636 jgi|Araly1|492636|fgenesh2_kg.7__2069__AT4G22310.1 771 0.0
> Ahg492636 jgi|Araly1|492636|fgenesh2_kg.7__2069__AT4G22310.1
Length=555
Score = 771 bits (417), Expect = 0.0
Identities = 524/572 (92%), Gaps = 22/572 (4%)
Strand=Plus/Plus
Query 120 TCGATGGCGACTTCGAAGCTTCAAGCTATTTGGAATCACCCTGCCGGACCTAAAACCATT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCGATGGCGACTTCGAAGCTTCAAGCTATTTGGAATCACCCTGCCGGACCTAAAACCATT 60
Query 180 CATTTCTGGGCACCAACGTTCAAGTGGGGTATTAGCATTGCCAACATTGCAGACTTTGCC 239
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATTTCTGGGCTCCGACGTTCAAGTGGGGTATTAGCATTGCCAACATTGCAGACTTTGCC 120
Query 240 AAACCTCCAGAGAAACTTTCCTATCCTCAACAAATCGCGGTTACATGCACTGGTGTTATT 299
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 121 AAACCTCCAGAAAAACTTTCCTATCCTCAACAAATCGCCGTTACATGCACTGGAGTTATT 180
Query 300 TGGTCTCGTTACAGCATGGTAATCAATCCGAAAAACTGGAACCTCTTCAGTGTTAATGTT 359
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 TGGTCTCGCTACAGCATGGTAATCAATCCGAAAAACTGGAACCTCTTCAGCGTTAATGTT 240
Query 360 GCTATGGCAGGGACAGGCATATACCAGCTTGCTCGTAAAATAAAACACGATTATGCAACC 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTATGGCAGGGACAGGCATATACCAGCTTGCTCGTAAAATAAAACACGATTATGCAACT 300
Query 420 GAAGCTGAGCCTGCCGTTGCGAGCGAATGATTATGATGACGAAGCTGAGATTTCTAAAGG 479
|||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 301 GAAGCTGAGCCTGCTGTTGCGAATGAATGATTATGATGACGAAGCTGAGATTTC-AAAGG 359
Query 480 AAACT-GGATATCATCTTGCTTCTGTTTGAAAATCTAGTCTCAAGATATATGATTTTCTT 538
||| | ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||
Sbjct 360 AAAATTGGATATCATCTTGCTTCTGCTTGAAAATCTAGT-TCAAGATATTTGATTTTCTT 418
Query 539 TAAATTCCAAGATCTTCTGATCGGATCACGATTATCATTTCCAAGGTTTTTTAAGTATTC 598
| |||||||| | |||||| ||||| |||||| | ||| ||| | | | | |
Sbjct 419 TGCATTCCAAGTTTTTCTGACCGGATTACGATT-T--TTT--AAG-T-----A--T-T-C 463
Query 599 CTGTTTGACATTTGTTCAAATGATAAAGGAGGTCAAAAAGTTCCCT-TCATA-TG--CTG 654
|||||||||||||||||||||||||||||||||| ||||| ||||| || | || |||
Sbjct 464 CTGTTTGACATTTGTTCAAATGATAAAGGAGGTCTAAAAGCTCCCTCTCTTCCTGTGCTG 523
Query 655 CTTTTAAAGTAAATCATCAAGTACTCCACAGA 686
|||| |||||||||||| ||||||||||||||
Sbjct 524 CTTTGAAAGTAAATCATTAAGTACTCCACAGA 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25237371054
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5