BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22320.1
Length=1052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492635 jgi|Araly1|492635|fgenesh2_kg.7__2068__AT4G22320.1 1319 0.0
> Ahg492635 jgi|Araly1|492635|fgenesh2_kg.7__2068__AT4G22320.1
Length=929
Score = 1319 bits (714), Expect = 0.0
Identities = 855/921 (93%), Gaps = 17/921 (2%)
Strand=Plus/Plus
Query 128 GTTATGGAAGGAGTTGGTGCACGGTTAGGTAGGTCCTCGACACGGTACGGACCGGCAACG 187
||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||
Sbjct 24 GTTGTGGAAGGAGTTGGGGCACGGTTAGGTAGGTCCTCGACTCGGTACGGACCAGCTACG 83
Query 188 GTTTTCACCGGACCGGTGAGGAAGTGGAAGAAGAAGTGGGTACACGTCTCTCCTTCCTCT 247
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 84 GTATTCACCGGTCCGGTGAGGAAGTGGAAGAAGAAGTGGGTTCACGTCTCTCCCTCCACT 143
Query 248 AAGAAAGACAATAATAATAGCTCCTCCGGTTCCGCCGCTGCTGCAGCTTCCGTCGTTAAC 307
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 144 AAGAAAGAC---AATAATAGCTCCTCCGGCTCCGCCGCTGCAGCAGCTTCCGTCGTTAAC 200
Query 308 GGTGGTTCGAATTCTGACGGTAGTAATGGATCGCATTTGTTGCTGTATAAGTGGGCACCA 367
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 201 GGTGGTTCGAATTCTGACGGCAGTAATGGATCGCATTTGTTGCTGTATAAGTGGGCGCCA 260
Query 368 TTGTCTCAGAATGGTAACGGCAATGAAGATGGTAAAAGTGAGAGTAATTCTCCGAGCGAG 427
||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 261 TTGTCTCAGAACGGTAACGGGGATGAAGATGGTAAAAGTGAGAGTAATTCTCCGAGTGAA 320
Query 428 GATACGGTGGCAACGGTGGCAGAAGATCCTCCACGGCGGAGATTCAAATACGTTCCGATA 487
|| |||||| | |||| ||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 321 GACACGGTGACGACGGCGGCAGAAGATCCTCCCCGGCGTAGATTCAAATACGTTCCGATT 380
Query 488 GCAGTACTTGAGGAACAGAAGAAGGAAATTACAGAAATTGAGGAAGATGATAAGATTGAG 547
|| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 381 GCTGTGCTTGAGGAACAGAAGAAGGAGATTACAGAGATTGAGGAAGATGATAAGATTGAG 440
Query 548 GAGGATGACAAGATTGATGAGGATAATAAGGTTGAGCAGGAAGACAAGGTTGATGAGGAC 607
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 441 GAGGATGACAAGATTGAAGAGGATAATAAGGTCGAGCAGGAAGAAAAGGTTGATGAGGAC 500
Query 608 AAAACTGTAGAGGAGTCGAGCGAGAAGAAAGCGGAAGTGGAAGTGGAGGAAAAGCCTGAC 667
|||| | |||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 501 AAAAGTTTAGAGGAGTCGAGCGAGAAG-AA----AA-CGGAAGTGGAGGAAAAGCCTGAC 554
Query 668 ATCAATGATGTTCCGATGGAAGATATTCAGCAGGTTGAAGAAAAAATAGTACAGGATGAT 727
|||||||||||||| ||||||||||||| | || |||||||||||||||||||||||||
Sbjct 555 ATCAATGATGTTCCCATGGAAGATATTC--C-GGATGAAGAAAAAATAGTACAGGATGAT 611
Query 728 GAAGAAAAAGTAGTGCGACAAGATTTGAACGAAAGCACTGTGGATTTAGGACTGAACTTA 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 GAAGAAAAAGTAGTGCGACAAGATTTGAACGAAAGCACTGTGGATTTAGGACTGAACTTA 671
Query 788 AATGCAAACGATGCTG-ATGCAGAAAACGACCCGAAAGAGGACAAGCCATTAGAAGAATG 846
||||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 672 AATGCAAACGATG-TGGATGCTGAAAACGCCCCGAAAGAGGACAAGCCATTAGAAGAATG 730
Query 847 ATAAACTGGGTGCATTGT-TTTGGTTCCTCACCCTCAACTCTCAATATCAATTAGGAAGA 905
||||||||||||||| | ||||||||||| ||||||||||||||||||| |||||||||
Sbjct 731 ATAAACTGGGTGCATCGGGTTTGGTTCCTCGCCCTCAACTCTCAATATCA-TTAGGAAGA 789
Query 906 AAGACATTACAGAAAGAACAAAGCAGTCATTAGATATGGACGCAGATCCTTGATTTGGTC 965
||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 790 AAGACAT-ACAGAAAGAACAGAGCAGTCATTAGATATGGACGCAAATCCTTGATTTGGTC 848
Query 966 TGTAACCCCATGGCTTATTCCTTTTGATGTTAATGGAAATGACTCATTGATTCAGACTGA 1025
|||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 849 TGTAACCCCATGGCTTATTCCTTTTGTTGTTAATGGAAACGGCTCATTGATTCAGACTGA 908
Query 1026 TCATTCAATTCATAGGAGATT 1046
||||||||||||||||| |||
Sbjct 909 TCATTCAATTCATAGGAAATT 929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39152235759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5