BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22330.1
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492634 jgi|Araly1|492634|fgenesh2_kg.7__2067__AT4G22330.1 1864 0.0
> Ahg492634 jgi|Araly1|492634|fgenesh2_kg.7__2067__AT4G22330.1
Length=1258
Score = 1864 bits (1009), Expect = 0.0
Identities = 1198/1283 (93%), Gaps = 38/1283 (3%)
Strand=Plus/Plus
Query 2 AAAAGGACC-A-agagagaga-agaagacgaaacgatcgtcagagatagagagagagaaA 58
|||||| || | ||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1 AAAAGGCCCAAGAGAGAGAGAGAGAAGACGAAACGATCGTC--------AGAGAGAGAAA 52
Query 59 GGTCATCACCCATTCTCACTCGCAGAATATTTGTTCTCATCTGATTCCTCCGATCTGCCA 118
|||| ||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 53 GGTC-TCATCCATTATTACTCGCAGAAGATTTGTTCTCATCTGATTCCTCCGATCTGCCA 111
Query 119 TGTCTCGGCTTTTCTAACGCTAAGAAGTTTCACAGACGCGGCGAAGGAGAGGGAGGAAGG 178
|| ||| |||| ||||| |||||||| |||||| |||||| ||| | |||||||| | |
Sbjct 112 TGGCTCTGCTTCGCTAACACTAAGAAGATTCACACACGCGGTGAA-G-GAGGGAGG-A-G 167
Query 179 AGATAGATCTCTTTTTCCGTCGCGATAATAATAAAAAATAAACGTGTCTAGAGGCTGTT- 237
||| |||||||||||||||||||| || || |||||||||||||||||||||||| ||
Sbjct 168 -GATCGATCTCTTTTTCCGTCGCGAGAAAAAAAAAAAATAAACGTGTCTAGAGGCT-TTC 225
Query 238 ACTGAA-GAGTTGATTCATACGGAGAGAGGATAGAAATGGCAGATGGGATATCGAGCTTT 296
||| || |||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 226 ACT-AAGGAGTTGATTCATACTGAGAGAAGATAGAAATGGCAGATGGGATATCGAGCTTT 284
Query 297 TGGGGTCCTGTGACTTCTACTATAGAGTGTTGTGAGATGAACTACGCCTACTCATCCTAC 356
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 285 TGGGGTCCTGTGACTTCTACTATAGAGTGTTGTGAGATAAACTACGCCTACTCATCCTAC 344
Query 357 ATTGCTGAGTTCTACAACACTATATCCAATGTCCCTGGAATCCTATTGGCTCTCATTGGT 416
||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 345 ATTGCAGAGTTTTATAACACTATCTCCAATGTCCCTGGAATCCTATTGGCTCTCATTGGT 404
Query 417 CTTGTCAATGCATTAAGGCAACGGTTTGAGAAGAGGTTTAGCATTCTTCACATTTCGAAT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 405 CTTGTCAATGCATTAAGGCAACGGTTTGAGAAGAGGTTTAGCATTCTTCACATATCGAAT 464
Query 477 ATGATACTTGCTATCGGCAGCATGCTCTACCATGCCACTTTGCAACACGTGCAACAACAG 536
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 ATGATTCTTGCTATCGGCAGCATGCTCTACCATGCCACTTTGCAACACGTGCAACAACAG 524
Query 537 AGTGATGAGACCCCAATGGTGTGGGAGATACTTCTATACATGTACATCCTTTACTCACCA 596
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 525 AGTGATGAGACCCCAATGGTGTGGGAGATACTTCTTTACATGTACATCCTTTACTCACCA 584
Query 597 GATTGGCATTACCGAAGTACAATGCCCACTTTTCTCTTCCTCTACGGTGCTGCCTTTGCC 656
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 585 GATTGGCATTACCGAAGTACAATGCCCACTTTTCTCTTCCTCTATGGTGCTGCCTTTGCC 644
Query 657 ATAGTCCATGCTTACCTCAGGTTTGGAATTGGTTTCAAGGTCCACTACGTGATACTTTGC 716
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 645 ATAGTCCATGCTTACCTCAGGTTTGGCATTGGTTTCAAGGTCCACTACGTGATCCTTTGC 704
Query 717 CTTCTATGCATCCCTCGGATGTACAAGTACTACATTCACACAGAGGACACAGCAGCCAAA 776
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 705 CTTCTATGCATCCCTCGGATGTACAAGTACTACATTCACACAGAGGACACCGCAGCCAAA 764
Query 777 AGGATTGCGAAATGGTATGTTGCTACGATCTTAGTGGGAAGCATATGCTGGTTCTGTGAC 836
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 765 AGGATTGCAAAATGGTATGTTGCTACAATCTTAGTGGGAAGCATATGCTGGTTCTGTGAC 824
Query 837 CGTGTCTTCTGCAAGACGATATCTCAGTGGCCTGTGAATCCTCAGGGACATGCTCTGTGG 896
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 825 CGTGTCTTCTGCAAGACGATATCTCAGTGGCCTGTGAATCCTCAGGGCCATGCTCTGTGG 884
Query 897 CATGTGTTCATGAGTTTCAACTCTTACTGCGCAAACACATTCTTGATGTTCTGCAGAGCT 956
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 885 CATGTGTTCATGAGTTTCAACTCTTACTGTGCAAACACATTCTTGATGTTCTGCCGAGCT 944
Query 957 CAGCAACGTGGATGGAACCCAAAGGTAAAATACTTTCTGGGAGTTCTCCCTTATGTCAAG 1016
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 945 CAGCAACGTGGATGGAACCCAAAGGTAAAATACTTTCTGGGAGTTCTTCCTTATGTCAAG 1004
Query 1017 ATCGAGAAGCCAAAAACACAATGAGAAGAAAATTGGGGATAAAAAAGCCCAGATGAA-GA 1075
|||||||||||||||||||| |||||||||||| ||||||||||| ||||||| ||| ||
Sbjct 1005 ATCGAGAAGCCAAAAACACAGTGAGAAGAAAAT-GGGGATAAAAA-GCCCAGAAGAAAGA 1062
Query 1076 AGAAGAAGATCATAAATATAGTTTTTGTTCATCGTTTTGTCAGAATCTCGACATGGtttt 1135
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1063 AGAAGAAGATCATAAATATAGTTTTTGTTCAACGTTTTGTCAGAATCTCGACATGGGTTT 1122
Query 1136 tttcttaattttattttttGAAAGTGAAACTCTCTAGATACAGTCTAGAttttttttttt 1195
||| | |||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1123 TTT---A-TTTTATTTTTTGGAAGTGAAACTCTCTAGATACAGTCTAGATCTTTTTTTTT 1178
Query 1196 ttttCTCATCTCTGTATTAGCTATTGGGAAT-GCTCTTAAGAAGAATTGA--TT--TTT- 1249
||| | |||||||||||| |||||||| | |||||||||||||||||| || |||
Sbjct 1179 CTTT-T--TCTCTGTATTAGTTATTGGGATTTGCTCTTAAGAAGAATTGAGATTGATTTT 1235
Query 1250 -AACTTGCTAAAAAAGCTCTTGT 1271
||||||||||| ||||||||||
Sbjct 1236 TAACTTGCTAAAGAAGCTCTTGT 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50398496274
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5