BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22340.3
Length=1742
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492631 jgi|Araly1|492631|fgenesh2_kg.7__2064__AT4G22340.3 2338 0.0
Ahg475100 jgi|Araly1|475100|fgenesh2_kg.2__230__AT1G62430.1 688 0.0
> Ahg492631 jgi|Araly1|492631|fgenesh2_kg.7__2064__AT4G22340.3
Length=1559
Score = 2338 bits (1266), Expect = 0.0
Identities = 1407/1475 (95%), Gaps = 9/1475 (1%)
Strand=Plus/Plus
Query 132 tttttGGCTTATCAATGATTTTTAGTTGCCAGAGTCTTTCTATCttt-t--ttttGTATT 188
||||||||||||||||| ||| || ||||| | | |||||| |||| | ||||||||
Sbjct 19 TTTTTGGCTTATCAATGGTTTGTATTTGCC--ATTTTTTCTA-CTTTCTCAATTTGTATT 75
Query 189 CTGACGTTAGACTAAGGTGATGCTAGATGTACTCAAGTTCAATTTTAA-ATT-TTCACAG 246
||| ||||| ||| |||||| || |||||| | ||| |||||||||| || |||||||
Sbjct 76 TTGATGTTAGGCTATGGTGATCCTGGATGTAGTGAAGCTCAATTTTAATTTTGTTCACAG 135
Query 247 GTAGTCAGTGTTTTTGTTTCGAACTCT-TCCAACATGCAGAAGGAAATTGCTGGTGATGC 305
|||||||||||||||||||| |||||| ||||||||| ||||||| |||||||||||
Sbjct 136 GTAGTCAGTGTTTTTGTTTCCAACTCTGGGCAACATGCAAAAGGAAACGGCTGGTGATGC 195
Query 306 TCCATCAGCACCAACCACTCGTGTTCGGCATCGGAAGCGAAACAGCGATGTTGGTGCAGG 365
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 196 TCCATCAGCACCTACCACTCGTGTTCGGCATCGGAAGCGGAACAGTGATGTTGGTGCAGG 255
Query 366 GGCAGGCAAACCAAATGGAAACCATTTACTTGTCAATGACAGCAAAAAATACAAATCGTT 425
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 256 GGCAGGCAAACCAAATGGAAGCCATTTACTTGTCAATGACAGCAAAAAATACAAATCGTT 315
Query 426 TCTCATTCGAGCATACTCCACTTTCTGGATGATAGGTGGTTTTGCTCTTATAGTTTACCT 485
|||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||
Sbjct 316 TCTCATTCGAGCATACTCCACTGTCTGGATGATTGGTGGTTTTGCTCTAATAGTTTACCT 375
Query 486 GGGTCATCTCTACATTACAGCCATGGTGGTTGTTATTCAGATATTCATGGCACGAGAACT 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 GGGTCATCTCTACATTACAGCCATGGTGGTTGTTATTCAGATATTCATGGCACGAGAACT 435
Query 546 TTTTAATTTGCTGAGAAAAACTCATGAAGATAAACAGCTCCCTGGTTTTAGATTACTGAA 605
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 436 TTTCAATTTGCTAAGAAAAACTCATGAAGACAAACAGCTCCCTGGTTTTAGATTACTGAA 495
Query 606 TTGGCACTTCTTTTTTACAGCAATGCTCTTTGTATATGGTCGAATACTTAGTCAACGGCT 665
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TTGGCACTTCTTTTTCACAGCAATGCTCTTTGTATATGGTCGAATACTTAGTCAACGGCT 555
Query 666 AGTCAACACTGTGACTCCAGACAAAGTCCTATATCGACTGGTCACAAGCCTCATCAAATA 725
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 556 AGTCAACACTGTGACTCCAGACAAAGTCCTATATCGACTGGTCACCAGCCTCATCAAATA 615
Query 726 CCACATGGCAATCTGTTACTCCTTGTATATTTCTGGCTTTGTTTGGTTTATTCTCACGCT 785
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 616 CCACATGGCAATCTGTTACTCCTTGTATATTTCTGGCTTTGTTTGGTTTATTCTGACGCT 675
Query 786 GAAAAAGAAGATGTACAAATATCAGTTTAGCCAATATGCATGGACACATATGATATTAAT 845
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 676 GAAAAAGAAGATGTACAAGTATCAGTTTAGCCAATATGCATGGACACATATGATCTTAAT 735
Query 846 TGTGGTGTTTACTCAGTCCTCATTCACTGTCGCCAACATCTTTGAAGGAATCTTCTGGTT 905
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 736 TGTGGTGTTTACTCAGTCCTCATTTACCGTGGCCAACATCTTTGAAGGAATCTTCTGGTT 795
Query 906 TCTTCTTCCTGCATCACTTATCGTCATCAATGACATATTTGCATATATCTGTGGTTTCTT 965
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 796 TCTTCTTCCTGCATCACTTATCGTCATCAATGACATATTCGCATATATCTGTGGTTTCTT 855
Query 966 CTTTGGAAGAACACCGTTGATCAAGTTATCACCAAAGAAAACATGGGAGGGTTTCATTGG 1025
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 CTTTGGAAGAACACCATTGATCAAGTTATCACCAAAGAAAACATGGGAGGGTTTCATTGG 915
Query 1026 AGCTTCTATTACCACAGTGATTTCTGCATTCCTGCTTGCAAATATAATGGGTCGTTTCCT 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 AGCTTCTATTACCACAGTGATTTCTGCATTCCTGCTTGCAAATATAATGGGTCGTTTCCT 975
Query 1086 GTGGCTGACATGTCCCAGAGAGGATCTATCGACAGGCTGGCTCCTCTGTGACCCTGGTCC 1145
||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||
Sbjct 976 GTGGCTGACATGTCCCAGAGAAGATCTATCGACAGGCTGGCTCCACTGTGACCCCGGTCC 1035
Query 1146 ACTGTTCAAGCAAGAGACACATGCTTTACCAGGATGGATTTCTGATTGGCTCCCTTGGAA 1205
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 ATTGTTCAAGCAAGAGACACATGCTTTACCAGGATGGATTTCTGATTGGCTCCCTTGGAA 1095
Query 1206 GGAAATTTCGATTCTACCAGTCCAGTGGCATGCTCTATGTCTTGGATTGTTCGCCTCTAT 1265
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1096 GGAAATTTCTATTCTACCAGTTCAGTGGCATGCTCTGTGTCTTGGATTGTTCGCCTCTAT 1155
Query 1266 AATAGCTCCTTTTGGTGGCTTCTTTGCCAGTGGTTTCAAAAGAGCATTCAAAATCAAGGA 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 AATAGCTCCTTTTGGTGGCTTCTTTGCCAGTGGTTTCAAAAGAGCATTCAAAATCAAGGA 1215
Query 1326 CTTTGGTGATAGTATTCCCGGACATGGCGGAATTACAGATAGAATGGATTGTCAGATGGT 1385
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1216 CTTTGGTGATAGTATTCCTGGACATGGCGGAATCACAGATAGAATGGATTGTCAGATGGT 1275
Query 1386 GATGGCTGTTTTTGCCTATATATATCATCAATCGTTTGTTGTACCTGAAGTCCTCTCTGT 1445
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 GATGGCTGTTTTTGCATATATATATCATCAATCGTTTGTTGTACCTGAAGTCCTCTCTGT 1335
Query 1446 GGATAAGCTCTTAGACCAGATAATCACAAGCCTGACATTGGAAGAACAACAAGCGCTACT 1505
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1336 GGATAAGCTCTTAGACCAGATAATCACAAGCCTGACATTGGAAGAACAACAAGCTCTATT 1395
Query 1506 CGTGAAGCTTGGCCAAATGTTGCAGGAAAAGGTTATTGGATCTTAGATCATCACAACCCG 1565
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 CATGAAGCTTGGGCAAATGTTGCAGGAAAAGGTTATTGGATCTTAGATCATCACAACCCT 1455
Query 1566 TCATTGTATACCATATTACTCTGCTTCCGTGTTAC 1600
|||||||||||||||||||||| |||| |||||||
Sbjct 1456 TCATTGTATACCATATTACTCTTCTTCTGTGTTAC 1490
Score = 71.3 bits (38), Expect = 2e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1705 CTTTATGAAAGAAAAGAAGCTCACTACAATTCTCTTAC 1742
||||||||||||||||||||||||||||||||||||||
Sbjct 1522 CTTTATGAAAGAAAAGAAGCTCACTACAATTCTCTTAC 1559
> Ahg475100 jgi|Araly1|475100|fgenesh2_kg.2__230__AT1G62430.1
Length=1811
Score = 688 bits (372), Expect = 0.0
Identities = 905/1157 (78%), Gaps = 57/1157 (5%)
Strand=Plus/Plus
Query 409 AAA-AAATACAAATCGTTTC-TCATTC-GAGCATACTCCACTTTCTGGATGATAGGTGGT 465
||| || |||||||| |||| | | | || | ||||| ||||| |||||||| ||||||
Sbjct 363 AAATAAGTACAAATC-TTTCATGGTCCGGA-CTTACTCGACTTTATGGATGATTGGTGGT 420
Query 466 TTTGCTCTT-ATAGTTTACCTGGGTCATCTCTACATTACAGCCATGGTGGTTGTTATTCA 524
|||| | || | || ||| |||| |||||||| || ||||| ||||| |||||||||||
Sbjct 421 TTTG-TTTTGGTTGTCTACATGGGACATCTCTATATCACAGCTATGGTTGTTGTTATTCA 479
Query 525 GATATTCATGGC-ACGAGAACTT-TTTAATTTGCTGAGAAAAACTCATGAAGATAAACAG 582
|| || ||||| | || | || |||||| ||||||| ||| | | ||| |||||| |
Sbjct 480 AATTTTTATGGCTA-AAG-AGTTGTTTAATCTGCTGAGGAAAGCACCTGAGGATAAA-TG 536
Query 583 -CT-CCCTGGTTTTAGATTA-CTGAATTGGCACTTCTTTTTTACAGCAATGCTCTTT-GT 638
|| |||||| ||| | | || ||||||||||||||||| || || ||||| ||| ||
Sbjct 537 TCTCCCCTGG-ATTA-AACAGCTTAATTGGCACTTCTTTTTCACTGCCATGCT-TTTCGT 593
Query 639 ATATGGTCGAATACTTAGTCAACGGCTAGTC-AACACTGTGACTCCAGACAAAG-TCCTA 696
|||||| || || |||||||||||| ||| | || || ||||| |||| || || |
Sbjct 594 ATATGGCCGGATCCTTAGTCAACGGTTAG-CTAATACCATGACTGCAGA-TCAGTTCTTT 651
Query 697 TATCGACTGGTCACAAGCCTCATCAAATACCACATGGCAATCTGTTACTCCTTGTATATT 756
||||| || ||||| |||| ||||||||||| ||||| |||||||||| ||||||| |
Sbjct 652 TATCGGCTAGTCACCGGCCTTATCAAATACCATATGGCTATCTGTTACTTGTTGTATA-T 710
Query 757 TCT-GGCTTT-GTTTGGTTTATTCTCACGCTGAAAAAGAAGATGTACAAATATCAGTTTA 814
| | || ||| | ||||| |||||||| | ||||||||||||||||| || ||||||
Sbjct 711 TATAGG-TTTCATGTGGTTCATTCTCACATTAAAAAAGAAGATGTACAAGTACCAGTTTG 769
Query 815 GCCAATATGCATGGACACATATGATATTAATTGTGGTGTTTACTCAGTCCTCATTCACTG 874
|||| ||||||||||| || ||||| ||||| || ||||||||||| || || |||||||
Sbjct 770 GCCAGTATGCATGGACCCACATGATTTTAATAGTCGTGTTTACTCAATCGTCGTTCACTG 829
Query 875 TCGCCAACATCTTTGAAGGAATCTTCTGGTTTCTTCTTCCTGCATCACTT-ATCGTCATC 933
| |||||||| |||||||| |||||||||||||||||||| ||||| || || | |||
Sbjct 830 TTGCCAACATATTTGAAGGGATCTTCTGGTTTCTTCTTCCAGCATC-GTTAATTATAATC 888
Query 934 AATGACATATTTGCATATATCTGT-GGTTTCTTCTTTGGAAGAACACCGTTGATCAAGTT 992
|| ||||| || || || || | | |||||||||||||||||||| || || || ||| |
Sbjct 889 AACGACATCTTCGCTTACAT-TTTCGGTTTCTTCTTTGGAAGAACGCCCTTAATAAAGCT 947
Query 993 ATCACCAAAGAAA-ACATGGGAGGGTTTCATTGGAGCTTCTATTACCAC-AGTGATTTCT 1050
|| ||||| ||| || |||||||| ||||| ||||||||| | || || | | || |||
Sbjct 948 GTCTCCAAA-AAAGACGTGGGAGGGATTCATCGGAGCTTCTGTGACAACTA-TCATCTCT 1005
Query 1051 GCATTCCTGCTTGCAAATATAATGGGTCGTT-TCCTGTGGCTGACATGTCCCA-GAGAGG 1108
||||| | || |||||||| ||||||||| ||| ||| ||||||| |||| || |||
Sbjct 1006 GCATTTGTTCTCGCAAATATTTTGGGTCGTTACCCT-TGGTTGACATG-CCCACGACAGG 1063
Query 1109 ATCTATCGACAGGCTGGCTCCTCTGTGACCCTGGTCCACTGTTCAAGCAAGAGA-CACAT 1167
|| | || || || ||||| | |||||| ||| |||| ||||||| | || | | |
Sbjct 1064 ATTTGTCCACTGGGTGGCTACAGTGTGACGCTGATCCATTGTTCAAACCTGA-ACCTTTT 1122
Query 1168 GCTTTACCAGGATGGATTTCTGATTGGCTCCCTTGGAAGGAAATTTCGATTCTACCAGTC 1227
|||||||| | |||||| | || ||| | |||||||||||||| || | || || ||
Sbjct 1123 GCTTTACCTGCATGGATCCCAGAATGGTTTCCTTGGAAGGAAATGACGGTCCTCCCTGTT 1182
Query 1228 CAGTGGCATGC-TCTATGTCTTGGATTGTTCGCCTCTATAATAGCTCCTTTTGGTGGCTT 1286
||||||||||| | |||| || || |||||||| || || ||||| |||||||| || ||
Sbjct 1183 CAGTGGCATGCAT-TATGCCTCGGTTTGTTCGCTTCAATCATAGCACCTTTTGGAGGATT 1241
Query 1287 CTTT-GCCAG-TGGTTTCAAAAGAGCATTCAAAATCAAGGACTTTGGTGATAGTATTCCC 1344
||| || || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 -TTTCGCTAGCGGGTTT-AAAAGAGCATTCAAAATCAAGGACTTTGGTGATAGTATTCCA 1299
Query 1345 GGACATGGCGGAATTACAGATAGAATGGATTGTCAGATGGTGATGGCTGTTTTTGCCTAT 1404
|||||||| ||||| |||||||||||||| || |||||||| ||||| || ||||| ||
Sbjct 1300 GGACATGGTGGAATCACAGATAGAATGGACTGCCAGATGGTTATGGCAGTATTTGCTTAC 1359
Query 1405 ATATATCATCAA-TCGTTTGTTGTA-CCTGAAGTCCTCTCTGTGGATAAGCTCTTAGACC 1462
||||||| || | || ||| | || || ||| | | || || || || || ||||||
Sbjct 1360 ATATATC-TCCAGTCATTTATAGTCTCCCAAAG-CGTTTCGGTTGACAAAATCCTAGACC 1417
Query 1463 AGATAATCAC-AAGCCTGACATTGGAAGAACAACAAGCGCTACT-CGTGAAGCTT-GGCC 1519
|| || | || || ||| || || || |||||||||||||| || |||||| || || |
Sbjct 1418 AGGTATTGACGAA-CCTTACCTTCGAGGAACAACAAGCGCT-CTTCGTGAAA-TTAGGAC 1474
Query 1520 AAATGTTGCAGGAAAAG 1536
||||| || |||| |||
Sbjct 1475 AAATGCTGAAGGACAAG 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65362860420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5