BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G22340.3 Length=1742 Score E Sequences producing significant alignments: (Bits) Value Ahg492631 jgi|Araly1|492631|fgenesh2_kg.7__2064__AT4G22340.3 2338 0.0 Ahg475100 jgi|Araly1|475100|fgenesh2_kg.2__230__AT1G62430.1 688 0.0 > Ahg492631 jgi|Araly1|492631|fgenesh2_kg.7__2064__AT4G22340.3 Length=1559 Score = 2338 bits (1266), Expect = 0.0 Identities = 1407/1475 (95%), Gaps = 9/1475 (1%) Strand=Plus/Plus Query 132 tttttGGCTTATCAATGATTTTTAGTTGCCAGAGTCTTTCTATCttt-t--ttttGTATT 188 ||||||||||||||||| ||| || ||||| | | |||||| |||| | |||||||| Sbjct 19 TTTTTGGCTTATCAATGGTTTGTATTTGCC--ATTTTTTCTA-CTTTCTCAATTTGTATT 75 Query 189 CTGACGTTAGACTAAGGTGATGCTAGATGTACTCAAGTTCAATTTTAA-ATT-TTCACAG 246 ||| ||||| ||| |||||| || |||||| | ||| |||||||||| || ||||||| Sbjct 76 TTGATGTTAGGCTATGGTGATCCTGGATGTAGTGAAGCTCAATTTTAATTTTGTTCACAG 135 Query 247 GTAGTCAGTGTTTTTGTTTCGAACTCT-TCCAACATGCAGAAGGAAATTGCTGGTGATGC 305 |||||||||||||||||||| |||||| ||||||||| ||||||| ||||||||||| Sbjct 136 GTAGTCAGTGTTTTTGTTTCCAACTCTGGGCAACATGCAAAAGGAAACGGCTGGTGATGC 195 Query 306 TCCATCAGCACCAACCACTCGTGTTCGGCATCGGAAGCGAAACAGCGATGTTGGTGCAGG 365 |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 196 TCCATCAGCACCTACCACTCGTGTTCGGCATCGGAAGCGGAACAGTGATGTTGGTGCAGG 255 Query 366 GGCAGGCAAACCAAATGGAAACCATTTACTTGTCAATGACAGCAAAAAATACAAATCGTT 425 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 256 GGCAGGCAAACCAAATGGAAGCCATTTACTTGTCAATGACAGCAAAAAATACAAATCGTT 315 Query 426 TCTCATTCGAGCATACTCCACTTTCTGGATGATAGGTGGTTTTGCTCTTATAGTTTACCT 485 |||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| Sbjct 316 TCTCATTCGAGCATACTCCACTGTCTGGATGATTGGTGGTTTTGCTCTAATAGTTTACCT 375 Query 486 GGGTCATCTCTACATTACAGCCATGGTGGTTGTTATTCAGATATTCATGGCACGAGAACT 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 376 GGGTCATCTCTACATTACAGCCATGGTGGTTGTTATTCAGATATTCATGGCACGAGAACT 435 Query 546 TTTTAATTTGCTGAGAAAAACTCATGAAGATAAACAGCTCCCTGGTTTTAGATTACTGAA 605 ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 436 TTTCAATTTGCTAAGAAAAACTCATGAAGACAAACAGCTCCCTGGTTTTAGATTACTGAA 495 Query 606 TTGGCACTTCTTTTTTACAGCAATGCTCTTTGTATATGGTCGAATACTTAGTCAACGGCT 665 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 496 TTGGCACTTCTTTTTCACAGCAATGCTCTTTGTATATGGTCGAATACTTAGTCAACGGCT 555 Query 666 AGTCAACACTGTGACTCCAGACAAAGTCCTATATCGACTGGTCACAAGCCTCATCAAATA 725 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 556 AGTCAACACTGTGACTCCAGACAAAGTCCTATATCGACTGGTCACCAGCCTCATCAAATA 615 Query 726 CCACATGGCAATCTGTTACTCCTTGTATATTTCTGGCTTTGTTTGGTTTATTCTCACGCT 785 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 616 CCACATGGCAATCTGTTACTCCTTGTATATTTCTGGCTTTGTTTGGTTTATTCTGACGCT 675 Query 786 GAAAAAGAAGATGTACAAATATCAGTTTAGCCAATATGCATGGACACATATGATATTAAT 845 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 676 GAAAAAGAAGATGTACAAGTATCAGTTTAGCCAATATGCATGGACACATATGATCTTAAT 735 Query 846 TGTGGTGTTTACTCAGTCCTCATTCACTGTCGCCAACATCTTTGAAGGAATCTTCTGGTT 905 |||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| Sbjct 736 TGTGGTGTTTACTCAGTCCTCATTTACCGTGGCCAACATCTTTGAAGGAATCTTCTGGTT 795 Query 906 TCTTCTTCCTGCATCACTTATCGTCATCAATGACATATTTGCATATATCTGTGGTTTCTT 965 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 796 TCTTCTTCCTGCATCACTTATCGTCATCAATGACATATTCGCATATATCTGTGGTTTCTT 855 Query 966 CTTTGGAAGAACACCGTTGATCAAGTTATCACCAAAGAAAACATGGGAGGGTTTCATTGG 1025 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 856 CTTTGGAAGAACACCATTGATCAAGTTATCACCAAAGAAAACATGGGAGGGTTTCATTGG 915 Query 1026 AGCTTCTATTACCACAGTGATTTCTGCATTCCTGCTTGCAAATATAATGGGTCGTTTCCT 1085 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 916 AGCTTCTATTACCACAGTGATTTCTGCATTCCTGCTTGCAAATATAATGGGTCGTTTCCT 975 Query 1086 GTGGCTGACATGTCCCAGAGAGGATCTATCGACAGGCTGGCTCCTCTGTGACCCTGGTCC 1145 ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 976 GTGGCTGACATGTCCCAGAGAAGATCTATCGACAGGCTGGCTCCACTGTGACCCCGGTCC 1035 Query 1146 ACTGTTCAAGCAAGAGACACATGCTTTACCAGGATGGATTTCTGATTGGCTCCCTTGGAA 1205 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1036 ATTGTTCAAGCAAGAGACACATGCTTTACCAGGATGGATTTCTGATTGGCTCCCTTGGAA 1095 Query 1206 GGAAATTTCGATTCTACCAGTCCAGTGGCATGCTCTATGTCTTGGATTGTTCGCCTCTAT 1265 ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1096 GGAAATTTCTATTCTACCAGTTCAGTGGCATGCTCTGTGTCTTGGATTGTTCGCCTCTAT 1155 Query 1266 AATAGCTCCTTTTGGTGGCTTCTTTGCCAGTGGTTTCAAAAGAGCATTCAAAATCAAGGA 1325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1156 AATAGCTCCTTTTGGTGGCTTCTTTGCCAGTGGTTTCAAAAGAGCATTCAAAATCAAGGA 1215 Query 1326 CTTTGGTGATAGTATTCCCGGACATGGCGGAATTACAGATAGAATGGATTGTCAGATGGT 1385 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1216 CTTTGGTGATAGTATTCCTGGACATGGCGGAATCACAGATAGAATGGATTGTCAGATGGT 1275 Query 1386 GATGGCTGTTTTTGCCTATATATATCATCAATCGTTTGTTGTACCTGAAGTCCTCTCTGT 1445 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1276 GATGGCTGTTTTTGCATATATATATCATCAATCGTTTGTTGTACCTGAAGTCCTCTCTGT 1335 Query 1446 GGATAAGCTCTTAGACCAGATAATCACAAGCCTGACATTGGAAGAACAACAAGCGCTACT 1505 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1336 GGATAAGCTCTTAGACCAGATAATCACAAGCCTGACATTGGAAGAACAACAAGCTCTATT 1395 Query 1506 CGTGAAGCTTGGCCAAATGTTGCAGGAAAAGGTTATTGGATCTTAGATCATCACAACCCG 1565 | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1396 CATGAAGCTTGGGCAAATGTTGCAGGAAAAGGTTATTGGATCTTAGATCATCACAACCCT 1455 Query 1566 TCATTGTATACCATATTACTCTGCTTCCGTGTTAC 1600 |||||||||||||||||||||| |||| ||||||| Sbjct 1456 TCATTGTATACCATATTACTCTTCTTCTGTGTTAC 1490 Score = 71.3 bits (38), Expect = 2e-11 Identities = 38/38 (100%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 1705 CTTTATGAAAGAAAAGAAGCTCACTACAATTCTCTTAC 1742 |||||||||||||||||||||||||||||||||||||| Sbjct 1522 CTTTATGAAAGAAAAGAAGCTCACTACAATTCTCTTAC 1559 > Ahg475100 jgi|Araly1|475100|fgenesh2_kg.2__230__AT1G62430.1 Length=1811 Score = 688 bits (372), Expect = 0.0 Identities = 905/1157 (78%), Gaps = 57/1157 (5%) Strand=Plus/Plus Query 409 AAA-AAATACAAATCGTTTC-TCATTC-GAGCATACTCCACTTTCTGGATGATAGGTGGT 465 ||| || |||||||| |||| | | | || | ||||| ||||| |||||||| |||||| Sbjct 363 AAATAAGTACAAATC-TTTCATGGTCCGGA-CTTACTCGACTTTATGGATGATTGGTGGT 420 Query 466 TTTGCTCTT-ATAGTTTACCTGGGTCATCTCTACATTACAGCCATGGTGGTTGTTATTCA 524 |||| | || | || ||| |||| |||||||| || ||||| ||||| ||||||||||| Sbjct 421 TTTG-TTTTGGTTGTCTACATGGGACATCTCTATATCACAGCTATGGTTGTTGTTATTCA 479 Query 525 GATATTCATGGC-ACGAGAACTT-TTTAATTTGCTGAGAAAAACTCATGAAGATAAACAG 582 || || ||||| | || | || |||||| ||||||| ||| | | ||| |||||| | Sbjct 480 AATTTTTATGGCTA-AAG-AGTTGTTTAATCTGCTGAGGAAAGCACCTGAGGATAAA-TG 536 Query 583 -CT-CCCTGGTTTTAGATTA-CTGAATTGGCACTTCTTTTTTACAGCAATGCTCTTT-GT 638 || |||||| ||| | | || ||||||||||||||||| || || ||||| ||| || Sbjct 537 TCTCCCCTGG-ATTA-AACAGCTTAATTGGCACTTCTTTTTCACTGCCATGCT-TTTCGT 593 Query 639 ATATGGTCGAATACTTAGTCAACGGCTAGTC-AACACTGTGACTCCAGACAAAG-TCCTA 696 |||||| || || |||||||||||| ||| | || || ||||| |||| || || | Sbjct 594 ATATGGCCGGATCCTTAGTCAACGGTTAG-CTAATACCATGACTGCAGA-TCAGTTCTTT 651 Query 697 TATCGACTGGTCACAAGCCTCATCAAATACCACATGGCAATCTGTTACTCCTTGTATATT 756 ||||| || ||||| |||| ||||||||||| ||||| |||||||||| ||||||| | Sbjct 652 TATCGGCTAGTCACCGGCCTTATCAAATACCATATGGCTATCTGTTACTTGTTGTATA-T 710 Query 757 TCT-GGCTTT-GTTTGGTTTATTCTCACGCTGAAAAAGAAGATGTACAAATATCAGTTTA 814 | | || ||| | ||||| |||||||| | ||||||||||||||||| || |||||| Sbjct 711 TATAGG-TTTCATGTGGTTCATTCTCACATTAAAAAAGAAGATGTACAAGTACCAGTTTG 769 Query 815 GCCAATATGCATGGACACATATGATATTAATTGTGGTGTTTACTCAGTCCTCATTCACTG 874 |||| ||||||||||| || ||||| ||||| || ||||||||||| || || ||||||| Sbjct 770 GCCAGTATGCATGGACCCACATGATTTTAATAGTCGTGTTTACTCAATCGTCGTTCACTG 829 Query 875 TCGCCAACATCTTTGAAGGAATCTTCTGGTTTCTTCTTCCTGCATCACTT-ATCGTCATC 933 | |||||||| |||||||| |||||||||||||||||||| ||||| || || | ||| Sbjct 830 TTGCCAACATATTTGAAGGGATCTTCTGGTTTCTTCTTCCAGCATC-GTTAATTATAATC 888 Query 934 AATGACATATTTGCATATATCTGT-GGTTTCTTCTTTGGAAGAACACCGTTGATCAAGTT 992 || ||||| || || || || | | |||||||||||||||||||| || || || ||| | Sbjct 889 AACGACATCTTCGCTTACAT-TTTCGGTTTCTTCTTTGGAAGAACGCCCTTAATAAAGCT 947 Query 993 ATCACCAAAGAAA-ACATGGGAGGGTTTCATTGGAGCTTCTATTACCAC-AGTGATTTCT 1050 || ||||| ||| || |||||||| ||||| ||||||||| | || || | | || ||| Sbjct 948 GTCTCCAAA-AAAGACGTGGGAGGGATTCATCGGAGCTTCTGTGACAACTA-TCATCTCT 1005 Query 1051 GCATTCCTGCTTGCAAATATAATGGGTCGTT-TCCTGTGGCTGACATGTCCCA-GAGAGG 1108 ||||| | || |||||||| ||||||||| ||| ||| ||||||| |||| || ||| Sbjct 1006 GCATTTGTTCTCGCAAATATTTTGGGTCGTTACCCT-TGGTTGACATG-CCCACGACAGG 1063 Query 1109 ATCTATCGACAGGCTGGCTCCTCTGTGACCCTGGTCCACTGTTCAAGCAAGAGA-CACAT 1167 || | || || || ||||| | |||||| ||| |||| ||||||| | || | | | Sbjct 1064 ATTTGTCCACTGGGTGGCTACAGTGTGACGCTGATCCATTGTTCAAACCTGA-ACCTTTT 1122 Query 1168 GCTTTACCAGGATGGATTTCTGATTGGCTCCCTTGGAAGGAAATTTCGATTCTACCAGTC 1227 |||||||| | |||||| | || ||| | |||||||||||||| || | || || || Sbjct 1123 GCTTTACCTGCATGGATCCCAGAATGGTTTCCTTGGAAGGAAATGACGGTCCTCCCTGTT 1182 Query 1228 CAGTGGCATGC-TCTATGTCTTGGATTGTTCGCCTCTATAATAGCTCCTTTTGGTGGCTT 1286 ||||||||||| | |||| || || |||||||| || || ||||| |||||||| || || Sbjct 1183 CAGTGGCATGCAT-TATGCCTCGGTTTGTTCGCTTCAATCATAGCACCTTTTGGAGGATT 1241 Query 1287 CTTT-GCCAG-TGGTTTCAAAAGAGCATTCAAAATCAAGGACTTTGGTGATAGTATTCCC 1344 ||| || || ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1242 -TTTCGCTAGCGGGTTT-AAAAGAGCATTCAAAATCAAGGACTTTGGTGATAGTATTCCA 1299 Query 1345 GGACATGGCGGAATTACAGATAGAATGGATTGTCAGATGGTGATGGCTGTTTTTGCCTAT 1404 |||||||| ||||| |||||||||||||| || |||||||| ||||| || ||||| || Sbjct 1300 GGACATGGTGGAATCACAGATAGAATGGACTGCCAGATGGTTATGGCAGTATTTGCTTAC 1359 Query 1405 ATATATCATCAA-TCGTTTGTTGTA-CCTGAAGTCCTCTCTGTGGATAAGCTCTTAGACC 1462 ||||||| || | || ||| | || || ||| | | || || || || || |||||| Sbjct 1360 ATATATC-TCCAGTCATTTATAGTCTCCCAAAG-CGTTTCGGTTGACAAAATCCTAGACC 1417 Query 1463 AGATAATCAC-AAGCCTGACATTGGAAGAACAACAAGCGCTACT-CGTGAAGCTT-GGCC 1519 || || | || || ||| || || || |||||||||||||| || |||||| || || | Sbjct 1418 AGGTATTGACGAA-CCTTACCTTCGAGGAACAACAAGCGCT-CTTCGTGAAA-TTAGGAC 1474 Query 1520 AAATGTTGCAGGAAAAG 1536 ||||| || |||| ||| Sbjct 1475 AAATGCTGAAGGACAAG 1491 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65362860420 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5