BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G22350.2 Length=2181 Score E Sequences producing significant alignments: (Bits) Value Ahg492629 jgi|Araly1|492629|fgenesh2_kg.7__2062__AT4G22350.1 2405 0.0 > Ahg492629 jgi|Araly1|492629|fgenesh2_kg.7__2062__AT4G22350.1 Length=1736 Score = 2405 bits (1302), Expect = 0.0 Identities = 1446/1516 (95%), Gaps = 7/1516 (0%) Strand=Plus/Plus Query 521 GAGGGAAATGGTAACAAAGTGAAAGGAGAAGCTCAAGTAGAGGTCGATGACGACGAAGAT 580 |||||||||||||||||||||| |||||||| | || || | ||| || || || ||| Sbjct 178 GAGGGAAATGGTAACAAAGTGAGAGGAGAAG-T--GGTCGACGACGAAGATGATGATGAT 234 Query 581 GATGATGATGATGCTTCGAAGGGGAGAGGAAAGCATTCACGCCATGTTGAAGTTCGTCGT 640 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 235 GATGATGATGATGCCTCGAAAGGGAGAGGAAAGCATTCACGCCATGTTGAAGTTCGTCGT 294 Query 641 GATTGTCCTTATCTTGATACTGTTAATCGTCAGGTGTTGGATTTTGATTTCGAGAGGTTT 700 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 295 GATTGTCCTTATCTTGATACCGTTAATCGTCAGGTGTTGGATTTTGATTTTGAGAGGTTT 354 Query 701 TGCTCTGTCTCATTGTCAAATCTGAATGTGTATGCGTGTCTTGTTTGTGGGAAGTACTTT 760 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 355 TGCTCTGTCTCCTTGTCAAATCTAAATGTGTATGCGTGTCTTGTTTGTGGGAAGTA-TTT 413 Query 761 -CAAGGAAGAAGCCAGAAGTCTCATGCTTATACACATAGCTTGGAAGCAGGACACCACGT 819 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 414 CCAAGGAAGAAGCCAGAAGTCTCATGCTTATACACATAGCTTGGAAGCAGGACACCACGT 473 Query 820 TTACATCAATCTTCTGACAGAGAAGGTTTATTGTCTTCCTGATAGTTACGAGATCAATGA 879 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 474 TTACATCAATCTTCTTACAGAGAAGGTTTATTGTCTTCCTGATAGTTATGAGATCAATGA 533 Query 880 CCCTTCTTTGGATGACATTCGCCATGTTTTAAACCCAAGGTTTAGTAGAGCACAAGTAAA 939 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 534 CCCTTCTTTGGATGACATTCGACATGTTTTAAACCCAAGGTTTAGTAGAGCACAAGTAGA 593 Query 940 CGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGG 999 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 594 CGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCGGG 653 Query 1000 AATGGTGGGGTTGAACAACATACAAAAGACAGAGTTTGTGAATGTTACAATCCAGTCGTT 1059 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 AATGGTGGGGTTGAACAACATACAAAAGACAGAGTTTGTGAATGTTACAATCCAGTCGTT 713 Query 1060 GATGAGAGTTACTCCTCTAAGGAATTTCTTCCTCATTCCTGAAAATTATCAGCACTGCAA 1119 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| Sbjct 714 GATGAGAGTTACTCCTCTAAGGAATTTTTTCCTCATTCCTGAGAATTATCAGCATTGCAA 773 Query 1120 GTCTCCTCTTGGTCACCGTTTTGGGGAACTAACTCGCAAGATTTGGCATGCTCGAAACTT 1179 ||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||| Sbjct 774 GTCTCCTCTTGTTCACCGTTTTGGGGAACTCACTCGGAAGATCTGGCATGCTCGAAACTT 833 Query 1180 TAAAGGACAAGTGAGTCCACATGAGTTCTTGCAAGCTGTCATGAAAGCCAGCAAGAAACG 1239 ||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 834 TAAAGGACAGGTAAGTCCACATGAATTCTTGCAAGCTGTCATGAAAGCCAGCAAGAAACG 893 Query 1240 CTTTAGGATTGGCCAACAATCAGATCCAGTAGAGTTTATGTCGTGGCTCCTCAACACTTT 1299 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 894 CTTTAGGATAGGCCAACAGTCAGATCCAGTAGAGTTTATGTCGTGGCTCCTCAACACTTT 953 Query 1300 GCACATGGATCTTAGAACTTCAAAGGACGCTAGCAGTATCATCCACAAGTGCTTCCAGGG 1359 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 954 GCACATGGATCTTAGAACTTCAAAGGACGCCAGCAGTATCATCCACAAGTGCTTCCAGGG 1013 Query 1360 TGAGTTGGAGGTTGTGAAAGAGTATCAAGGCAATGAAAACAAAGAAATCTCCAGGATGCC 1419 |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 TGAGCTGGAGGTTGTGAGAGAGTATCAAGGCAATGAAAACAAAGAAATCTCCAGGATGCC 1073 Query 1420 GTTTCTGATGCTTGGGCTAGATTTGCCACCGCCTCCTCTTTTCAAAGATGTCATGGAGAA 1479 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1074 TTTTCTGATGCTTGGGCTAGATTTGCCACCGCCTCCTCTTTTCAAAGATGTCATGGAGAA 1133 Query 1480 AAACATTATTCCGCAGGTTGCTCTATTCGATTTATTGAAGAAGTTTGATGGAGAAACGGT 1539 |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 1134 AAACATAATTCCGCAGGTTGCTCTATTCGATTTGTTGAAGAAGTTTGATGGAGAAACTGT 1193 Query 1540 GACAGAGGTGGTTCGGCCTAAGCTGGCCAGAATGAGATACCGTGTAATCAAATCTCCTCG 1599 ||||||||||||||| |||||| |||||||||||||||| ||| ||| ||||||||||| Sbjct 1194 GACAGAGGTGGTTCGCCCTAAGTTGGCCAGAATGAGATATCGTATAACCAAATCTCCTCC 1253 Query 1600 TTACTTGATGTTCCATATGGTTCGGTTCAAGAAGAATAACTTCTTCAAAGAGAAGAACCC 1659 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1254 TTACTTGATGTTCCATATGGTTCGGTTCAAGAAGAATAACTTCTTCAAAGAGAAAAACCC 1313 Query 1660 TACATTGGTTAACTTCCCAGTGAAGGACATGGAGCTGAGGGATTACATACCATCATTGCC 1719 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1314 TACCTTGGTTAACTTCCCAGTGAAGGACATGGAGCTGAGGGATTACATACCATCATTGCC 1373 Query 1720 TAGAGCACCAGAAGGGGAGAATGTGTGTTCAAAGTATAATCTAATCGCTAACATTGTACA 1779 ||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| Sbjct 1374 TAGAGCACCAGAAGGCGAGAAGGTGTGTTCGAAGTATAATCTAATCGCGAACATTGTACA 1433 Query 1780 TGATGGTAAGCCTGAGGACGGGTACTTCAGAGTCTTTGTGCAGCGCAAGTCACAAGAACT 1839 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1434 TGATGGTAAGCCGGAGGACGGGTACTTCAGAGTCTTTGTGCAGCGCAAGTCACAAGAACT 1493 Query 1840 ATGGTACGAGATGCAGGATCTTCATGTTGCAGAGACACTTCCCCAGATGGTAGAACTATC 1899 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 1494 ATGGTACGAGATGCAGGATCTTCATGTTGCAGAGACACTTCCCCAGATGGTGGAACTTTC 1553 Query 1900 GGAAGCATACATGCAGATATATGAGCAGCAGGAAGAATA--GAGCCCTGGAAAGAAACTG 1957 |||||||||||||||||| |||||||||||||| ||||| |||| ||||||| | |||| Sbjct 1554 GGAAGCATACATGCAGATTTATGAGCAGCAGGATGAATAAAGAGCACTGGAAACATACTG 1613 Query 1958 ACTTCATTTGGTTTAAGAGTAAAAGTGACCAGTTTTATCTTGGAATGAGATTAGAGATTT 2017 |||| || |||||||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 1614 ACTTGATCTGGTTTAAGAGTAAAAGTTACCAGTTTTTTCTTGGAATGAGATTAGAGATTT 1673 Query 2018 GTTTCACAACTCTTTT 2033 |||||||||||||||| Sbjct 1674 GTTTCACAACTCTTTT 1689 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82084477975 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5