BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22350.2
Length=2181
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492629 jgi|Araly1|492629|fgenesh2_kg.7__2062__AT4G22350.1 2405 0.0
> Ahg492629 jgi|Araly1|492629|fgenesh2_kg.7__2062__AT4G22350.1
Length=1736
Score = 2405 bits (1302), Expect = 0.0
Identities = 1446/1516 (95%), Gaps = 7/1516 (0%)
Strand=Plus/Plus
Query 521 GAGGGAAATGGTAACAAAGTGAAAGGAGAAGCTCAAGTAGAGGTCGATGACGACGAAGAT 580
|||||||||||||||||||||| |||||||| | || || | ||| || || || |||
Sbjct 178 GAGGGAAATGGTAACAAAGTGAGAGGAGAAG-T--GGTCGACGACGAAGATGATGATGAT 234
Query 581 GATGATGATGATGCTTCGAAGGGGAGAGGAAAGCATTCACGCCATGTTGAAGTTCGTCGT 640
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 235 GATGATGATGATGCCTCGAAAGGGAGAGGAAAGCATTCACGCCATGTTGAAGTTCGTCGT 294
Query 641 GATTGTCCTTATCTTGATACTGTTAATCGTCAGGTGTTGGATTTTGATTTCGAGAGGTTT 700
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 295 GATTGTCCTTATCTTGATACCGTTAATCGTCAGGTGTTGGATTTTGATTTTGAGAGGTTT 354
Query 701 TGCTCTGTCTCATTGTCAAATCTGAATGTGTATGCGTGTCTTGTTTGTGGGAAGTACTTT 760
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 355 TGCTCTGTCTCCTTGTCAAATCTAAATGTGTATGCGTGTCTTGTTTGTGGGAAGTA-TTT 413
Query 761 -CAAGGAAGAAGCCAGAAGTCTCATGCTTATACACATAGCTTGGAAGCAGGACACCACGT 819
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CCAAGGAAGAAGCCAGAAGTCTCATGCTTATACACATAGCTTGGAAGCAGGACACCACGT 473
Query 820 TTACATCAATCTTCTGACAGAGAAGGTTTATTGTCTTCCTGATAGTTACGAGATCAATGA 879
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 474 TTACATCAATCTTCTTACAGAGAAGGTTTATTGTCTTCCTGATAGTTATGAGATCAATGA 533
Query 880 CCCTTCTTTGGATGACATTCGCCATGTTTTAAACCCAAGGTTTAGTAGAGCACAAGTAAA 939
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 534 CCCTTCTTTGGATGACATTCGACATGTTTTAAACCCAAGGTTTAGTAGAGCACAAGTAGA 593
Query 940 CGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGG 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 594 CGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCGGG 653
Query 1000 AATGGTGGGGTTGAACAACATACAAAAGACAGAGTTTGTGAATGTTACAATCCAGTCGTT 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 AATGGTGGGGTTGAACAACATACAAAAGACAGAGTTTGTGAATGTTACAATCCAGTCGTT 713
Query 1060 GATGAGAGTTACTCCTCTAAGGAATTTCTTCCTCATTCCTGAAAATTATCAGCACTGCAA 1119
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 714 GATGAGAGTTACTCCTCTAAGGAATTTTTTCCTCATTCCTGAGAATTATCAGCATTGCAA 773
Query 1120 GTCTCCTCTTGGTCACCGTTTTGGGGAACTAACTCGCAAGATTTGGCATGCTCGAAACTT 1179
||||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 774 GTCTCCTCTTGTTCACCGTTTTGGGGAACTCACTCGGAAGATCTGGCATGCTCGAAACTT 833
Query 1180 TAAAGGACAAGTGAGTCCACATGAGTTCTTGCAAGCTGTCATGAAAGCCAGCAAGAAACG 1239
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 834 TAAAGGACAGGTAAGTCCACATGAATTCTTGCAAGCTGTCATGAAAGCCAGCAAGAAACG 893
Query 1240 CTTTAGGATTGGCCAACAATCAGATCCAGTAGAGTTTATGTCGTGGCTCCTCAACACTTT 1299
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CTTTAGGATAGGCCAACAGTCAGATCCAGTAGAGTTTATGTCGTGGCTCCTCAACACTTT 953
Query 1300 GCACATGGATCTTAGAACTTCAAAGGACGCTAGCAGTATCATCCACAAGTGCTTCCAGGG 1359
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 954 GCACATGGATCTTAGAACTTCAAAGGACGCCAGCAGTATCATCCACAAGTGCTTCCAGGG 1013
Query 1360 TGAGTTGGAGGTTGTGAAAGAGTATCAAGGCAATGAAAACAAAGAAATCTCCAGGATGCC 1419
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TGAGCTGGAGGTTGTGAGAGAGTATCAAGGCAATGAAAACAAAGAAATCTCCAGGATGCC 1073
Query 1420 GTTTCTGATGCTTGGGCTAGATTTGCCACCGCCTCCTCTTTTCAAAGATGTCATGGAGAA 1479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TTTTCTGATGCTTGGGCTAGATTTGCCACCGCCTCCTCTTTTCAAAGATGTCATGGAGAA 1133
Query 1480 AAACATTATTCCGCAGGTTGCTCTATTCGATTTATTGAAGAAGTTTGATGGAGAAACGGT 1539
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1134 AAACATAATTCCGCAGGTTGCTCTATTCGATTTGTTGAAGAAGTTTGATGGAGAAACTGT 1193
Query 1540 GACAGAGGTGGTTCGGCCTAAGCTGGCCAGAATGAGATACCGTGTAATCAAATCTCCTCG 1599
||||||||||||||| |||||| |||||||||||||||| ||| ||| |||||||||||
Sbjct 1194 GACAGAGGTGGTTCGCCCTAAGTTGGCCAGAATGAGATATCGTATAACCAAATCTCCTCC 1253
Query 1600 TTACTTGATGTTCCATATGGTTCGGTTCAAGAAGAATAACTTCTTCAAAGAGAAGAACCC 1659
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1254 TTACTTGATGTTCCATATGGTTCGGTTCAAGAAGAATAACTTCTTCAAAGAGAAAAACCC 1313
Query 1660 TACATTGGTTAACTTCCCAGTGAAGGACATGGAGCTGAGGGATTACATACCATCATTGCC 1719
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TACCTTGGTTAACTTCCCAGTGAAGGACATGGAGCTGAGGGATTACATACCATCATTGCC 1373
Query 1720 TAGAGCACCAGAAGGGGAGAATGTGTGTTCAAAGTATAATCTAATCGCTAACATTGTACA 1779
||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 1374 TAGAGCACCAGAAGGCGAGAAGGTGTGTTCGAAGTATAATCTAATCGCGAACATTGTACA 1433
Query 1780 TGATGGTAAGCCTGAGGACGGGTACTTCAGAGTCTTTGTGCAGCGCAAGTCACAAGAACT 1839
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 TGATGGTAAGCCGGAGGACGGGTACTTCAGAGTCTTTGTGCAGCGCAAGTCACAAGAACT 1493
Query 1840 ATGGTACGAGATGCAGGATCTTCATGTTGCAGAGACACTTCCCCAGATGGTAGAACTATC 1899
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1494 ATGGTACGAGATGCAGGATCTTCATGTTGCAGAGACACTTCCCCAGATGGTGGAACTTTC 1553
Query 1900 GGAAGCATACATGCAGATATATGAGCAGCAGGAAGAATA--GAGCCCTGGAAAGAAACTG 1957
|||||||||||||||||| |||||||||||||| ||||| |||| ||||||| | ||||
Sbjct 1554 GGAAGCATACATGCAGATTTATGAGCAGCAGGATGAATAAAGAGCACTGGAAACATACTG 1613
Query 1958 ACTTCATTTGGTTTAAGAGTAAAAGTGACCAGTTTTATCTTGGAATGAGATTAGAGATTT 2017
|||| || |||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1614 ACTTGATCTGGTTTAAGAGTAAAAGTTACCAGTTTTTTCTTGGAATGAGATTAGAGATTT 1673
Query 2018 GTTTCACAACTCTTTT 2033
||||||||||||||||
Sbjct 1674 GTTTCACAACTCTTTT 1689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82084477975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5