BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22360.1
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492627 jgi|Araly1|492627|fgenesh2_kg.7__2060__AT4G22360.1 1362 0.0
> Ahg492627 jgi|Araly1|492627|fgenesh2_kg.7__2060__AT4G22360.1
Length=1602
Score = 1362 bits (737), Expect = 0.0
Identities = 832/875 (95%), Gaps = 17/875 (2%)
Strand=Plus/Plus
Query 812 ATTGTGAGGCAATTGTGGGCTTATATAAGGAAGAATAACCTTCAAGACCCGAGTAACAAG 871
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 728 ATTGTGAGGCAACTGTGGGCTTATATAAGGAAGAATAACCTTCAAGATCCGAGTAACAAG 787
Query 872 CGGAAGATCATCTGTGATGATGCGTTGCGTGTGGTTTTTGAGACTGATTGCACTGACATG 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 CGGAAGATCATCTGTGATGATGCGTTGCGTGTGGTTTTTGAGACTGATTGCACTGACATG 847
Query 932 TTCAAGATGAATAAGTTGCTTGCTAAGCATATTCTCCCGCTTGATCCATCAAAGGACTCT 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TTCAAGATGAATAAGTTGCTTGCTAAGCATATTCTCCCGCTTGATCCATCAAAGGACTCT 907
Query 992 GGTCAAGCAAAAAAGGCAAAAACTGAGGTGGAGACTAAGACTGAGACCACCGAGCC---- 1047
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 908 GGTCAAGCAAAAAAGGCAAAAGCTGAGGTGGAGACTAAGACTGAGACCACAGAGCCTGTT 967
Query 1048 ---T--A------TTAGTTCAACTGCTATTAGTTCAACTGTTACATTATCTGAGCCACTT 1096
| | |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 968 AATTCAACTGCTGTTAGTTCAACTGCTGTTAGTTCAACTGTTGCATTATCTGAGCCACTT 1027
Query 1097 GGTAAGTTCTTTGGCACTGGTGAGACGGAGATGGCAGACGAAGAGATTATTCGCCGTGTT 1156
| |||||||||||||||||||||| |||||||| ||||| ||||||| ||||| ||||||
Sbjct 1028 GCTAAGTTCTTTGGCACTGGTGAGGCGGAGATGACAGACAAAGAGATCATTCGTCGTGTT 1087
Query 1157 TGGGAATACATAAAACTCAACAATTTAGAGGACCCAGTAAATCCAATGGCTATTCAGTGT 1216
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1088 TGGGAATACATTAAACTCAACAATTTAGAGGACCCTGTAAATCCAATGGCTATTCAGTGT 1147
Query 1217 GATGAAAAGCTCCGAGATCTTCTTGGATGTGAAAGCATTTCAGCTGTGGGGATAAATGAG 1276
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 GATGAAAAGCTCCGCGATCTTCTTGGATGTGAAAGCATTTCAGCTGTGGGGATAAATGAG 1207
Query 1277 ATGCTGAGGCGCCATATGTACAAGCAGTCGTGATATCTTCTGGTCTGACTTAATTAACTA 1336
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1208 ATGCTGATGCGCCATATGTACAAGCAGTCGTGATATCTTCTGGTCTGACTAAATTAACTA 1267
Query 1337 GGAACTACTAGTGTGTGTATCTAGGGAACCTACTTATGACTCCTTGCTGTAGAACTCTGA 1396
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1268 GGAACTACTAGTGTGTGTATCTAGGGAACCTACTTATGACTCCTTGGTGTAGAACTCTGA 1327
Query 1397 TAGGGAAGAAAAGATCCTTTTCACTTTTAACTTCCTTTAATGCTATTTTAATCTTCCGTT 1456
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1328 TAGGGAAGAAAAGAACCTTTTCACTTTTAACTTCCGTTAATGCTATTTTAATCTTCCGTT 1387
Query 1457 GGGTTCTTTGTTTTAGTTGGTTGTGTATCGACATGCTTAGGTTGATGTTGTATTTAGTAT 1516
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1388 GGGTTCTTTGTTTTAGTTGGTTGTGTATCGACATGGTTAGGTTGATGTTGTATTTAGTAT 1447
Query 1517 TGTACCGAAACTCTAGTGTTAAGGGTGAAACGGCGCAGATGTTTTGTATTAAACGCCATT 1576
||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||||||
Sbjct 1448 TGTACTGAAACTCTAGTGTTAAGGGTGAAATGGCGCATATGTTTTGTATTTAACGCCATT 1507
Query 1577 CACCCATGAATGTCTTAGGaaaaaaaaa--CTCATGTGTTTAACTATGTTTTCCCTGTTG 1634
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1508 CACCCATGAATGTCTTAGGAAAAAAAAAAACTCATGTGTTTAACTATGTTTTCCCTGTTG 1567
Query 1635 GAAATATTTGCATCCTACTGATAGAAAAATCTTAT 1669
|||| ||||||||||||||||||||||||||||||
Sbjct 1568 GAAAAATTTGCATCCTACTGATAGAAAAATCTTAT 1602
Score = 929 bits (503), Expect = 0.0
Identities = 704/789 (89%), Gaps = 62/789 (8%)
Strand=Plus/Plus
Query 8 aagaggataagagagagaaagatatagaga-ATTTGTTGTCtttttttctttttcttttg 66
|||| ||||||||||||||||| ||||||| | | ||| |||||| |||||| |||
Sbjct 1 AAGAAGATAAGAGAGAGAAAGAGATAGAGAGA-AT-TTG---TTTTTT-TTTTTC--TTG 52
Query 67 tggggtatttgtttttttttttctccttaaaaagtttttttttttGTGTGTATGaaaaaa 126
|||||||||||||||||||||| ||||| |||| ||||||||||| ||||||| ||
Sbjct 53 TGGGGTATTTGTTTTTTTTTTT-TCCTT--AAAGATTTTTTTTTTG-GTGTATG----AA 104
Query 127 aaaGCTTTGAAATTCTCTCTCGACAATGGTGTCGGACCAGGATCTAGCGAAAGGAGTCGA 186
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 AAAGCTTTGAAA-T-TCTCTCGACAATGGTGTCGGACCAGGATCTAGCGAAAGGAGTCGA 162
Query 187 GACTTTGCTTCGACAATCCGACCCTAGCTCTCTCACATCGTTAAGCAGTATTGTTCAGCA 246
|||||||||||| ||||| ||||||||||||||||||||||||| |||| ||||||| ||
Sbjct 163 GACTTTGCTTCGGCAATCTGACCCTAGCTCTCTCACATCGTTAACCAGTGTTGTTCAACA 222
Query 247 GCTTGAAGCTAAGTTAGGGTTAGACCTCACGGAGAAGACGACTTTCATCAGAGATCAGAT 306
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 223 GCTTGAAGCTAAGTTAGGGTTAGACCTTACGGAGAAGACGACTTTCATCAGAGATCAGAT 282
Query 307 CAATATCCTCCTCCGTGCTCACCAAAACCCTTCTGCCTCCGTCGCCTCCGCTTCATCCGT 366
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 283 CAATATCCTCCTCCGTGCTCACCAAAACCCTTCAGCCTCCGTCGCCTCCGCTTCATCCGT 342
Query 367 ACAACAATCTCACCCTCCTCCTCCGCCGTCTTCTCACCAGCAGCAGAATTTGCATTCCGG 426
|||||||||||| |||||| |||||||||||| ||||||||||||||||||||
Sbjct 343 ACAACAATCTCA---TCCTCCGCCGCCGTCTTCT------CAGCAGAATTTGCATTCCGG 393
Query 427 CGTCAATGTTCCTCCGATGGCGAAAGGGCATTTCACACTTAGCCATCCTTCGCAATTCTC 486
|||||||| | |||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 394 CGTCAATG-T--TCCGGTGGCGAAAGGGCATTTCACACTTAGCCATCCGTCGCAATTCTC 450
Query 487 TGTTTCTTCTCAATCACAACAATATCCTTCACATTTCGCTCTTCAGCCTCCTTATCACTC 546
|| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 451 TG--T-TTCTCAATCACAACAATATCCTCCACATTTCGCTCTTCAGCCTCCTTATCACTC 507
Query 547 TTATGACCTAAATTTCCGGCAGCCTTATCCGGTTTACATGCCGCCGCAACAGCA-C--CA 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 508 TTATGACCTAAATTTCCGGCAGCCTTATCCGGTTTACATGCCGCCGCAACAGCATCAGCA 567
Query 604 ---GCATCAGCAGCAGTCTCCGCGACAACAACAATCCTCTGTGATGCTCTCACATGGCGG 660
||| ||||||||||||||||| |||||| |||||||||||||| ||||| ||||
Sbjct 568 CCAGCACCAGCAGCAGTCTCCGCGGCAACAA---TCCTCTGTGATGCTTTCACAAGGCG- 623
Query 661 GAATGCTTCTCTATCTGTTAATCAAGCCCCAAAAGAAAGTGCTCCGGCTGGAACTAAAAG 720
|| | | ||| |||||||||||||||||||||||||||||||||||
Sbjct 624 -----CT-----A------A-TCAGGCCCCAAAAGAAAGTGCTCCGGCTGGAACTAAAAG 666
Query 721 AAAGGGTGGTCCTGGAGGACTAAACAAAGTCTGTAGGGTTTCTCCAGAACTTGAAGTAGT 780
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 667 AAAGGGTGGTCCTGGAGGACTAAACAAAGTCTGTAGGGTTTCTCCAGAACTTCAAGTCGT 726
Query 781 TGTTGGTGA 789
| ||| |||
Sbjct 727 TATTG-TGA 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62772723760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5