BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G22370.1

Length=715
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg329383 jgi|Araly1|329383|fgenesh1_pm.C_scaffold_7001610           621    2e-177
  Ahg492627 jgi|Araly1|492627|fgenesh2_kg.7__2060__AT4G22360.1         180    1e-44 


> Ahg329383 jgi|Araly1|329383|fgenesh1_pm.C_scaffold_7001610
Length=393

 Score =  621 bits (336),  Expect = 2e-177
 Identities = 374/393 (95%), Gaps = 0/393 (0%)
 Strand=Plus/Plus

Query  159  ATGGCTTTCTTCTACTGGTTGATCATGAAGCTGGGAAAGGATATCAAGATTATTGTTAAA  218
            ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct  1    ATGGCTTTCTTCTACTGGTTGATCAAGAAGCTGGGAAAAGATATCAAGATTATTGTTAAA  60

Query  219  CCAACGTTCAAAGATGGCATGACCGTTGGAGTTCAATGGCAACTCGAATGTGACAAGTCA  278
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  61   CCAACGTTCAAAGATGGCATGACCGTTGGAGTTCAATGGCAACTCGAATGTGATAAGTCA  120

Query  279  CACATCCAATTGGGGAAGGGATTCAGTTTCCACATTTGCCATATGTACCAGGGAAAGCTA  338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  121  CACATCCAATTGGGGAAGGGATTCAGTTTCCACATTTGCCATATGTACCAGGGAAAGCTG  180

Query  339  TTGATAAAGAATGTGGAGATGTTCATGGAACCAATTTTCCACATAGAGCACCTAAGACTA  398
            |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct  181  TTGATAAAGAATGTTGAGATGTTCATGGAGCCAATTTTCCACATAGAGCATCTAAGACTA  240

Query  399  AGAACTATGGCGTTTGCAGTGAGTATTGCTGAGAAGATAGTCACTTTCTTGAGACAAGCA  458
            |||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| ||  
Sbjct  241  AGAACTATGGCGTTTGCAGTGAGTATGGCTGAGAAGATATTCACTTTGTTGAGACCAGGG  300

Query  459  GAAAACACAAGGAGACAAGCAATGGCACTCCTGCTACTTGTTCTTCTGCTGCTTGCTGCA  518
            ||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||
Sbjct  301  GAAAACACAAGGAGACAAGCAATGATACTCCTGCTACTTGCTCTTCTGCTGCTTGCTGCA  360

Query  519  GCCGCTTTCTACGTCACACGTCTGAGATTCTGA  551
            |||||||||||| ||||||| ||||| ||||||
Sbjct  361  GCCGCTTTCTACTTCACACGACTGAGTTTCTGA  393


> Ahg492627 jgi|Araly1|492627|fgenesh2_kg.7__2060__AT4G22360.1
Length=1602

 Score =  180 bits (97),  Expect = 1e-44
 Identities = 106/110 (96%), Gaps = 2/110 (2%)
 Strand=Plus/Minus

Query  608   ATAAGATTTTTCTATCAGTAGGATGCAAATATTTCCAACAGGGAAAACATAGTTAAACAC  667
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  1602  ATAAGATTTTTCTATCAGTAGGATGCAAATTTTTCCAACAGGGAAAACATAGTTAAACAC  1543

Query  668   ATGAGttttttttt--CCTAAGACATTCATGGGTGAATGGCGTTTAATAC  715
             ||||||||||||||  |||||||||||||||||||||||||||| |||||
Sbjct  1542  ATGAGTTTTTTTTTTTCCTAAGACATTCATGGGTGAATGGCGTTAAATAC  1493



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26304812730


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5