BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22380.1
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492625 jgi|Araly1|492625|fgenesh2_kg.7__2058__AT4G22380.1 787 0.0
Ahg490061 jgi|Araly1|490061|fgenesh2_kg.6__3195__AT4G12600.1 488 2e-137
Ahg488918 jgi|Araly1|488918|fgenesh2_kg.6__2052__AT5G20160.2 396 1e-109
> Ahg492625 jgi|Araly1|492625|fgenesh2_kg.7__2058__AT4G22380.1
Length=558
Score = 787 bits (426), Expect = 0.0
Identities = 516/560 (92%), Gaps = 4/560 (1%)
Strand=Plus/Plus
Query 2 AAGGACAGATTTGTAAACATTCTCAAATCCTTCAAAAACCCTAATTTCTTTCTGTGAGCT 61
|||||| ||||| | |||||| ||||||| || |||||||||||||| |||| ||||||
Sbjct 1 AAGGACCGATTTCTTAACATTGTCAAATCTTTTAAAAACCCTAATTTGATTCTCTGAGCT 60
Query 62 TATTGAGAACGAAGAAGATGACGGGAGAGGTAGTGAACCCTAAGGCGTATCCGTTAGCAG 121
|||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||
Sbjct 61 TATTGAGAACGAAGAAGATGGCGGGAGAGGCAGTGAACCCTAAAGCGTATCCGTTAGCAG 120
Query 122 ATTCTCAGCTT-TCGATAACAATAATGGATCTTGTTCAACAAGCTACTAACTACAAGCAG 180
||||||| ||| |||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 121 ATTCTCA-CTTATCGATAACAATACTGGACCTCGTTCAACAAGCTACTAACTACAAGCAG 179
Query 181 CTTAAGAAGGGAGCTAATGAAGCTACCAAAACATTGAACCGTGGAATCTCTGAGTTCGTT 240
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 180 CTTAAGAAGGGAGCTAATGAAGCTACCAAGACATTGAACCGTGGGATCTCTGAGTTCGTT 239
Query 241 GTTATGGCTGCTGATGCTGAACCACTTGAGATTCTTCTTCATCTTCCTTTGCTTGCCGAA 300
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 240 GTTATGGCTGCTGATGCTGAGCCTCTTGAGATTCTTCTTCATCTTCCTTTACTTGCCGAA 299
Query 301 GATAAGAATGTGCCATATGTGTTTGTACCTTCGAAACAAGCATTGGGAAGAGCATGTGGA 360
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 300 GATAAGAATGTGCCGTATGTGTTTGTACCTTCGAAGCAAGCATTGGGAAGAGCATGCGGA 359
Query 361 GTAACAAGACCTGTTATTGCTTGTTCAGTGACATCGAATGAGGCAAGCCAGTTGAAATCG 420
||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 360 GTAACGAGACCTGTTATCGCTTGTTCAGTGACATCGAACGAGGCAAGCCAGTTGAAGTCA 419
Query 421 CAGATTCAGCATCTCAAGGATGCAATTGAGAAGCTCCTGATCTAAGGA-TTTCTGCTCAG 479
||||||||||| || |||||||| || ||||||||||||||||||||| ||| || || |
Sbjct 420 CAGATTCAGCACCTGAAGGATGCGATAGAGAAGCTCCTGATCTAAGGAATTT-TGTTCGG 478
Query 480 TATGAAGAGTCTCTGCAATGTGGAATGGCTCTGACTGAAGTTAGTTTGTGTGATTTACCT 539
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
Sbjct 479 TATGAAGAGTCTCTGCAATGTGGAGTGGCTCTGACTGAAGTTAGTTTGTGCAATTTACGT 538
Query 540 ATTTGAAGAATGTATTGTGA 559
||||| ||| ||||||||||
Sbjct 539 ATTTGGAGATTGTATTGTGA 558
> Ahg490061 jgi|Araly1|490061|fgenesh2_kg.6__3195__AT4G12600.1
Length=536
Score = 488 bits (264), Expect = 2e-137
Identities = 357/401 (89%), Gaps = 9/401 (2%)
Strand=Plus/Plus
Query 68 GAACGAAGAAGATGACGGGAG-AGGTAGTGAACCCTAAGGCGTATCCGTTAGCAGATTCT 126
||| |||||||||||||| || ||| |||||| || ||||||||||||||||| ||||||
Sbjct 2 GAA-GAAGAAGATGACGGTAGAAGG-AGTGAATCCAAAGGCGTATCCGTTAGCTGATTCT 59
Query 127 CAGCTT-TCGATAACAATAATGGATCTTGTTCAACAAGCTACTAACTACAAGCAGCTTAA 185
||| || ||||||| || | |||||||||||||||||||| || ||||| ||||||||
Sbjct 60 CAG-TTAGCGATAACGATTCTTGATCTTGTTCAACAAGCTACGAATTACAAACAGCTTAA 118
Query 186 GAAGGGAGCTAATGAAGCTACCAAAACATTGAACCGTGGAATCTCTGAGTTCGTTGTTAT 245
||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 119 GAAAGGAGCTAATGAAGCTACTAAGACATTGAACCGTGGGATCTCTGAGTTCGTTGTTAT 178
Query 246 GGCTGCTGATGCTGAACCACTTGAGATTCTTCTTCATCTTCCT-TTGCTTGCCGAAGATA 304
||||||||||||||| || |||||||||||||||||||||||| || ||||| |||||||
Sbjct 179 GGCTGCTGATGCTGAGCCTCTTGAGATTCTTCTTCATCTTCCTCTT-CTTGCTGAAGATA 237
Query 305 AGAATGTGCCATATGTGTTTGTACCTTCGAAACAAGCA-TTGGGAAGAGCATGTGGAGTA 363
|||||||||||||||||||||| || ||||||||||| |||| |||||||||||| |||
Sbjct 238 AGAATGTGCCATATGTGTTTGTGCCATCGAAACAAGCCCTTGG-AAGAGCATGTGGTGTA 296
Query 364 ACAAGACCTGTTATTGCTTGTTCAGTGACATCGAATGAGGCAAGCCAGTTGAAATCGCAG 423
|||||||| || || |||||||| || |||||||| ||||| || ||||||||||| |||
Sbjct 297 ACAAGACCGGTGATCGCTTGTTCGGTTACATCGAACGAGGCTAGTCAGTTGAAATCTCAG 356
Query 424 ATTCAGCATCTCAAGGATGCAATTGAGAAGCTCCTGATCTA 464
|||||||| || |||||||| ||||||||||||||||||||
Sbjct 357 ATTCAGCACCTTAAGGATGCCATTGAGAAGCTCCTGATCTA 397
> Ahg488918 jgi|Araly1|488918|fgenesh2_kg.6__2052__AT5G20160.2
Length=710
Score = 396 bits (214), Expect = 1e-109
Identities = 383/462 (83%), Gaps = 21/462 (5%)
Strand=Plus/Plus
Query 75 GAAGATGACGGGAGAGGTAGTGAACCCTAAGGCGTATCCG-TTAGCAGATTCTCAGCTT- 132
||| ||||| ||||| | || |||||||| ||||||||| || |||||||||||| ||
Sbjct 90 GAAAATGACCGGAGAAGCCGTTAACCCTAAAGCGTATCCGCTT-GCAGATTCTCAG-TTA 147
Query 133 TCGATAACAATAATGGATCTTGTTCAACAAGCTACTAACTACAAGCAGCTTAAGAAGGGA 192
|||||||| || | || || ||||||||||||||||||||||||||||| ||||||||
Sbjct 148 TCGATAACGATTCTTGACCTCGTTCAACAAGCTACTAACTACAAGCAGCTCAAGAAGGGT 207
Query 193 GCTAATGAAGCTACCAAAACA-TTGAACCGTGGAATCTCTGAGTTCGTTGTTATGGCTGC 251
|||||||||||||| || || || || ||||||||||| ||||| || |||||||||||
Sbjct 208 GCTAATGAAGCTACGAAGACTCTT-AATCGTGGAATCTCCGAGTTTGTGGTTATGGCTGC 266
Query 252 TGATGCTGAACCACTTGAGATTCTTCTTCATCTTCCTTTGCTTGCCGAAGATAAGAATGT 311
|||||||| || || |||||||||||||||||||| || ||||| || |||||||||||
Sbjct 267 AGATGCTGAGCCTCTAGAGATTCTTCTTCATCTTCCCTTACTTGCTGAGGATAAGAATGT 326
Query 312 GCCATATGTGTTTGTACCTTCGAAA-CAAGCATTGGGAAGAGCATGTGGAGTAACAAGAC 370
|| ||||| || || ||||| ||| ||||| ||||||||||| ||||| || || ||||
Sbjct 327 TCCTTATGTCTTCGTGCCTTC-AAAGCAAGCCTTGGGAAGAGCCTGTGGTGTGACTAGAC 385
Query 371 CTGTTATTGCTTGTTCAGTGACATCGAATGAGGCAAGCCAGTTGAAATCGCAGATTCAGC 430
||||||| ||||||||||| ||||| ||||| || || || |||||||| ||||| ||||
Sbjct 386 CTGTTATCGCTTGTTCAGTCACATCTAATGAAGCTAGTCAATTGAAATCACAGATCCAGC 445
Query 431 ATCTCAAGGATGCAATTGAGAAGCTCCTGATCTAAGGA-TT-TC---T-GCT--CA-G-T 480
||||||||||||| ||||||||||| || |||||||| || || | ||| | | |
Sbjct 446 ATCTCAAGGATGCTATTGAGAAGCTTCTTATCTAAGGCCTTCTCCGATTGCTTGCTCGGT 505
Query 481 ATGAAGAGTCTCTGC-AATGTGGAATGGCTCTGACTGAAGTT 521
|||| | ||||| || |||| |||| |||| |||||||||||
Sbjct 506 ATGATGGGTCTCCGCGAATG-GGAA-GGCTTTGACTGAAGTT 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27867852327
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5