BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22390.1
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329380 jgi|Araly1|329380|fgenesh1_pm.C_scaffold_7001607 1701 0.0
Ahg333370 jgi|Araly1|333370|fgenesh1_pm.C_scaffold_649000002 1685 0.0
Ahg333369 jgi|Araly1|333369|fgenesh1_pm.C_scaffold_649000001 1648 0.0
Ahg329378 jgi|Araly1|329378|fgenesh1_pm.C_scaffold_7001605 490 1e-137
> Ahg329380 jgi|Araly1|329380|fgenesh1_pm.C_scaffold_7001607
Length=1203
Score = 1701 bits (921), Expect = 0.0
Identities = 1122/1217 (92%), Gaps = 22/1217 (2%)
Strand=Plus/Plus
Query 60 ATGGCGGAATGTCCGACGGATCTCATCAACGAAATGTTTCTCCGTCTCAG-AGCAACTAC 118
|||||||||||||||| ||||||||||||||| |||| ||||||||| | |||||||||
Sbjct 1 ATGGCGGAATGTCCGATGGATCTCATCAACGAGTTGTTCCTCCGTCTC-GCAGCAACTAC 59
Query 119 GCTCGTAAAG-TGTCGCGTCC-TCTCAAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAG 176
||| || | | ||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 60 GCTTGT-ACGTTGTCGCG-CCGTCTCGAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAG 117
Query 177 TTCGTCTCATCTCATCTCCGTCGCAGACTCGAAACGGGAGAACATCTCATGATCTTACTC 236
||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 118 TTCATCTCATCTCATCTCCGTCGCAGACTCGAAACAGGACAACATCTCATGATCTTACTC 177
Query 237 CGAGGACCTCGTCTTCTACGCACGGTGGAGCTAGACTCGCCTGAGAACGTCTCCGACATC 296
|||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 178 CGAGGACCTCGTCTTCTACGTACGGTGGAGCTCGACTCGCCTGAGAACGTCACCGACATC 237
Query 297 CCTCATCCTTTACAAGCCGGAGGTTTTACAGAGGTTTTTGGTTCATTTAACGGTGTCATA 356
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 238 CCTCATCCTTTACAAGCCGGAGGTTTTACAGAGGTTTTTGGTTCCTTTAACGGTGTCATC 297
Query 357 GGGTTATGTAACTCTCCTGTTGATC-TAGCGATCTTTAATCCTTCGACTAGGAAGATTCA 415
|||||||| |||||||||||||| | ||||||| ||||||||||| || |||||||||||
Sbjct 298 GGGTTATGCAACTCTCCTGTTGA-CATAGCGATTTTTAATCCTTCCACAAGGAAGATTCA 356
Query 416 CCGTTTACCAATTGAGCCAATTGATTTCCCAGAACGTGACATCACTCGTGAGTATGTGTT 475
|| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 357 TCGGTTACCGATTGAGCCACTTGATTTCCCAGAACGTCACATCACTCGTGAGTATGTGTT 416
Query 476 TTACGGTTTGGGTTATGATTCTGTGGGCGATGACTTTAAAGTTGTGAGGATTG-TTCAGT 534
|||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||
Sbjct 417 TTACGGTTTGGGTTATGATTCTGTTAGCGATGACTTTAAAGTTGTGAGGA-TGCTTCAGT 475
Query 535 GTAAGCTTAAAGAAGGTAAAAAGAAATTTCCTTGCCCTGTTGAAGTCAAAGTTTTCAGCT 594
||||||||||| ||||||| |||| ||| || |||||||||| |||||||||||||||
Sbjct 476 CTAAGCTTAAAGGAGGTAAAGAGAATTTTGGTTACCCTGTTGAAATCAAAGTTTTCAGCT 535
Query 595 TGAAGAAGAATTCGTGGAAGAGAGTGTGTCTTATGTTCGAGTTTCAGATTCTTTGGATTT 654
||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 536 TGAAGAAGAATTCGTGGAAGAGAGTGTGTCTTATGTTCGAGGTTCAGATTCTTTTCA-TT 594
Query 655 C-GTACTATTACCATCTCTTGCCTCGTCGTGGCTATGGTGTGGTTGTTAACAACCATCTT 713
| ||||||||||||||||||||||||||||| ||||| ||| | | |||||| ||||||
Sbjct 595 CACTACTATTACCATCTCTTGCCTCGTCGTGGTTATGGCGTGCTAGCTAACAATCATCTT 654
Query 714 CACTGGATTTTGCCTCGAAGGCAGGGAGTCATTGCCTTTAACGCGATAATCAAATATGAT 773
||||||||||||||||||||||| ||| |||||||||||||| ||||||||| || ||||
Sbjct 655 CACTGGATTTTGCCTCGAAGGCAAGGAATCATTGCCTTTAACACGATAATCAGATTTGAT 714
Query 774 CTTGCCTCTGATGACATTGGAGTCCTCAGTTTCCCACAGGAGCTTTACATTGAAGATAAC 833
||||||||||||||| ||||||||||||||||||||| || ||||||| ||||||| |
Sbjct 715 CTTGCCTCTGATGACCTTGGAGTCCTCAGTTTCCCACGGGCTCTTTACACTGAAGATGAT 774
Query 834 ATGGATATTGGTGTGTTAGATGGCTGCGTTTGTTTGATGTGTTACGACGAGTATAGCCAT 893
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 775 ATGGATATTGGTGTGTTAGATGGCTGCGTTTGTTTGATGTGTTACGACGAGTTTAGCCAT 834
Query 894 GTTGATGTTTGGGTTTTGAAAGAGTATGAGGAT-TATAAATCTTGGACTAAGCTGTATAG 952
|||||||||||||||||||| |||||||| ||| || ||||||||||||||||||| |||
Sbjct 835 GTTGATGTTTGGGTTTTGAAGGAGTATGAAGATGTA-AAATCTTGGACTAAGCTGTTTAG 893
Query 953 GGTGCCGAAACCAGAGAGTGTTGAATCGGTTGAGTTCATTAGACCTCTGATCTGTTCCAA 1012
||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 894 GGTGCCGAAACCAGAGAGTGTTGAATCGGTTGACTTCATGAGACCTCTGATCTATTCCAA 953
Query 1013 GGACAGGAGCAAGATTTTGCTGGAGATTAACAATGCGGCGAATCTCATGTGGTTTGATTT 1072
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 954 GGACAGGAGCAAGATTTTACTGGAGATTAACAATGCGAAGAATCTCATGTGGTTTGATTT 1013
Query 1073 GGAAAGTCAGAGTCTTACAACTGCCGGAATAGAGTGTGATAGTTCATTTACCGCAGACAT 1132
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1014 GGAAAGTAAGAGTCTTACAACTGTTGGAATAGAGTGTGATAGTTCATTTACCGCAGACAT 1073
Query 1133 CCTCGTGAGTAGCCTTGTTTTGGGATGTAAAGGAGATCCTACTCAAGCTCAGCGCAGTAA 1192
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1074 CCTCGTGAGTAGCCTTGTTTTGGGATGTAAAGGAGATCCTACTGAAGCTCAGCGCAGGAA 1133
Query 1193 AGATCAGAAGATGATGCCAAAGAGTA-CTAAAAGGTGGGATGGTTTTCTGTCCAAGGGAT 1251
|||||| || || |||| ||||||| | |||||| | |||||||||||||||||||||
Sbjct 1134 AGATCA-AA--TGGTGCCGAAGAGTAAC-AAAAGG-G--ATGGTTTTCTGTCCAAGGGAT 1186
Query 1252 TCAAGCTGAAGCTATGA 1268
|||||||||||||||||
Sbjct 1187 TCAAGCTGAAGCTATGA 1203
> Ahg333370 jgi|Araly1|333370|fgenesh1_pm.C_scaffold_649000002
Length=1203
Score = 1685 bits (912), Expect = 0.0
Identities = 1116/1214 (92%), Gaps = 16/1214 (1%)
Strand=Plus/Plus
Query 60 ATGGCGGAATGTCCGACGGATCTCATCAACGAAATGTTTCTCCGTCTCAGAGCAACTACG 119
||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct 1 ATGGCGGAATGTCCGACGGATATCATCAACGAGTTGTTCCTCCGTCTCAGAGCAACTACG 60
Query 120 CTCGTAAAGTGTCGCGTCCTCTCAAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAGTTC 179
|| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTGTAAAGTGTCGCGTCGTCTCGAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAGTTC 120
Query 180 GTCTCATCTCATCTCCGTCGCAGACTCGAAACGGGAGAACATCTCATGATCTTACTCCGA 239
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCTCCTCTCATCTCCGTCGCAGACTCGAAACGGGAGAACATCTCATGATCTTACTCCGA 180
Query 240 GGACCTCGTCTTCTACGCACGGTGGAGCTAGACTCGCCTGAGAACGTCTCCGACATCCCT 299
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GGACCTCGTCTTCTACGTACGGTGGAGCTCGACTCGCCTGAGAACGTCTCCGACATCCCT 240
Query 300 CATCCTTTACAAGCCGGAGGTTTTACAGAGGTTTTTGGTTCATTTAACGGTGTCATAGGG 359
|||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 241 CATCCTTTGCAAGCCGGAGGTTTTACCGAGGTTTTTGGTTCCTTTAACGGTGTCATCGGG 300
Query 360 TTATGTAACTCTCCTGTTGATC-TAGCGATCTTTAATCCTTCGACTA-GGAAGATTCACC 417
||||| |||||||| ||||| | ||||||| |||||||||||||| | |||||||||| |
Sbjct 301 TTATGCAACTCTCCCGTTGA-CATAGCGATTTTTAATCCTTCGAC-ACGGAAGATTCATC 358
Query 418 GTTTACCAATTGAGCCAATTGATTTCCCAGAACGTGACATCACTCGTGAGTATGTGTTTT 477
| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 359 GGTTACCGATTGAGCCACTTGATTTCCCAGAACGTCACATCACTCGTGAGTATGTGTTTT 418
Query 478 ACGGTTTGGGTTATGATTCTGTGGGCGATGACTTTAAAGTTGTGAGGATTGTTCAGTGTA 537
||||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||| ||
Sbjct 419 ACGGTTTGGGTTATGATTCTGTGAGCGATGACTATAAAGTGGTGAGGATGGTTCAGTCTA 478
Query 538 AGCTTAAAGAAGGTAAAAAGAAATTTCCTTGCCCTGTTGAAGTCAAAGTTTTCAGCTTGA 597
||| ||||| |||||||||||| ||| ||| | ||||| |||||||||| |||||||
Sbjct 479 AGCCTAAAGGAGGTAAAAAGAATTTTGGTTG--C-ATTGAAATCAAAGTTTTTAGCTTGA 535
Query 598 AGAAGAATTCGTGGAAGAGAGTGTGTCTTATGTTCGAGTTTCAGATTCTTTGGATTTC-G 656
|||||||||||||||||||||||||||||||||||||| |||||||||||| | |||
Sbjct 536 AGAAGAATTCGTGGAAGAGAGTGTGTCTTATGTTCGAGGTTCAGATTCTTTTCA-TTCAC 594
Query 657 TACTATTACCATCTCTTGCCTCGTCGTGGCTATGGTGTGGTTGTTAACAACCATCTTCAC 716
||||||||||||||||||||||||||||| ||||| || | | |||||| |||||||||
Sbjct 595 TACTATTACCATCTCTTGCCTCGTCGTGGTTATGGCGTTCTAGCTAACAATCATCTTCAC 654
Query 717 TGGATTTTGCCTCGAAGGCAGGGAGTCATTGCCTTTAACGCGATAATCAAATATGATCTT 776
|||||||||||||||||||| ||| |||| |||||||| |||||||||| || |||||||
Sbjct 655 TGGATTTTGCCTCGAAGGCAAGGAATCATCGCCTTTAATGCGATAATCAGATTTGATCTT 714
Query 777 GCCTCTGATGACATTGGAGTCCTCAGTTTCCCACAGGAGCTTTACATTGAAGATAACATG 836
|| ||||||||| ||||||||||||||||||||| || ||||||| ||||||| | |||
Sbjct 715 GCTTCTGATGACCTTGGAGTCCTCAGTTTCCCACGGGCTCTTTACACTGAAGATGATATG 774
Query 837 GATATTGGTGTGTTAGATGGCTGCGTTTGTTTGATGTGTTACGACGAGTATAGCCATGTT 896
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 775 GATATTGGTGTGTTAGATGGCTGCGTTTGTTTGATGTGTTACGACAAGTTTAGCCATGTT 834
Query 897 GATGTTTGGGTTTTGAAAGAGTATGAGGATTATAAATCTTGGACTAAGCTGTATAGGGTG 956
|||||||||||| |||| |||||||| |||| ||||||||||||||||||| |||||||
Sbjct 835 GATGTTTGGGTTCTGAAGGAGTATGAAGATTGGAAATCTTGGACTAAGCTGTTTAGGGTG 894
Query 957 CCGAAACCAGAGAGTGTTGAATCGGTTGAGTTCATTAGACCTCTGATCTGTTCCAAGGAC 1016
|||||||||||||| |||||||||||||| ||||| |||||| || | | ||||||||||
Sbjct 895 CCGAAACCAGAGAGCGTTGAATCGGTTGACTTCATGAGACCTATGGTGTATTCCAAGGAC 954
Query 1017 AGGAGCAAGATTTTGCTGGAGATTAACAATGCGGCGAATCTCATGTGGTTTGATTTGGAA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AGGAGCAAGATTTTGCTGGAGATTAACAATGCGGCGAATCTCATGTGGTTTGATTTGGAA 1014
Query 1077 AGTCAGAGTCTTACAACTGCCGGAATAGAGTGTGATAGTTCATTTACCGCAGACATCCTC 1136
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AGTAAGAGTCTTACAACTGTTGGAATAGAGTGTGATAGTTCATTTACCGCAGACATCCTC 1074
Query 1137 GTGAGTAGCCTTGTTTTGGGATGTAAAGGAGATCCTACTCAA-GCTCAGCGCAGTAAAGA 1195
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 1075 GTGAGTAGCCTTGTTTTGGGATGTAAAGGAGATCCTAC-CAAAGCTCAGCGCAGGAAAGA 1133
Query 1196 TCAGAAGATGATGCCAAAGAGTA-CTAAAAGGTGGGATGGTTTTCTGTCCAAGGGATTCA 1254
||| || ||||||| ||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 1134 TCA-AA--TGATGCCGAAGAGTAAC-AAAAGGTGGGATGGTTTTCTGGCCAAGGGATTCA 1189
Query 1255 AGCTGAAGCTATGA 1268
||||||||||||||
Sbjct 1190 AGCTGAAGCTATGA 1203
> Ahg333369 jgi|Araly1|333369|fgenesh1_pm.C_scaffold_649000001
Length=1206
Score = 1648 bits (892), Expect = 0.0
Identities = 1118/1223 (91%), Gaps = 31/1223 (3%)
Strand=Plus/Plus
Query 60 ATGGCGGAATGTCCGACGGATCTCATCAACGAAATGTTTCTCCGTCTCAG-AGCAACTAC 118
|||||||||||||||| ||||||||||||||| |||| ||||||||| | |||||||||
Sbjct 1 ATGGCGGAATGTCCGATGGATCTCATCAACGAGTTGTTCCTCCGTCTC-GCAGCAACTAC 59
Query 119 GCTCGTAAAG-TGTCGCGTCC-TCTCAAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAG 176
||| || | | ||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 60 GCTTGT-ACGTTGTCGCG-CCGTCTCGAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAG 117
Query 177 TTCGTCTCATCTCATCTCCGTCGCAGACTCGAAACGGGAGAACATCTCATGATCTTACTC 236
||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 118 TTCATCTCATCTCATCTCCGTCGCAGACTCGAAACAGGACAACATCTCATGATCTTACTC 177
Query 237 CGAGGACCTCGTCTTCTACGCACGGTGGAGCTAGACTCGCCTGAGAACGTCTCCGACATC 296
|||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 178 CGAGGACCTCGTCTTCTACGTACGGTGGAGCTCGACTCGCCTGAGAACGTCACCGACATC 237
Query 297 CCTCATCCTTTACAAGCCGGAGGTTTTACAGAGGTTTTTGGTTCATTTAACGGTGTCATA 356
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 238 CCTCATCCTTTACAAGCCGGAGGTTTTACAGAGGTTTTTGGTTCCTTTAACGGTGTCATC 297
Query 357 GGGTTATGTAACTCTCCTGTTGATC-TAGCGATCTTTAATCCTTCGACTA-GGAAGATTC 414
|||||||| |||||||||||||| | ||||||| |||||||||||||| | |||||||||
Sbjct 298 GGGTTATGCAACTCTCCTGTTGA-CATAGCGATTTTTAATCCTTCGAC-ACGGAAGATTC 355
Query 415 ACCGTTTACCAATTGAGCCAATTGATTTCCCAGAACGTGACATCACTCGTGAGTATGTGT 474
| || ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 356 ATCGGTTACCAATTGAGCCACTTGATCTCCCAGAACGTCACATCACTCGTGAGTATGTGT 415
Query 475 TTTACGGTTTGGGTTATGATTCTGTGGGCGATGACTTTAAAGTTGTGAGGATTG-TTCAG 533
||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct 416 TTTACGGTTTGGGTTATGATTCTGTTAGCGATGACTTTAAAGTTGTGAGGAT-GCTTCAG 474
Query 534 TGTAAGCTTAAAGAAGGTAAAAAGAAATTTCCTTGCCCTGTTGAAGTCAAAGTTTTCAGC 593
| ||||||||||| ||||||| |||| ||| || |||||||||| ||||||||||||||
Sbjct 475 TCTAAGCTTAAAGGAGGTAAAGAGAATTTTGGTTACCCTGTTGAAATCAAAGTTTTCAGC 534
Query 594 TTGAAGAAGAATTCGTGGAAGAGAGTGTGTCTTATGTTCGAGTTTCAGATTCT-TTGGAT 652
|||||||||||||||||||||||||||| ||||||||||||| |||||||||| || ||
Sbjct 535 TTGAAGAAGAATTCGTGGAAGAGAGTGTATCTTATGTTCGAGGTTCAGATTCTGTTC-AT 593
Query 653 TT-CGTACTATTACCATCTCTTGCCTCGTCGTGGCTATGGTGTGGTTGTTAACAACCATC 711
|| | | ||||||||||||||||||||||||||||||||||||| | | |||||| ||||
Sbjct 594 TTACTT-CTATTACCATCTCTTGCCTCGTCGTGGCTATGGTGTGCTAGCTAACAATCATC 652
Query 712 TTCACTGGATTTTGCCTCGAAGGCAGGGAGTCATTGCCTTTAACGCGATAATCAAATATG 771
||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| || ||
Sbjct 653 TTCACTGGATTTTGCCTCGAAGGCAAGGAATCATTGCCTTTAACACGATAATCAGATTTG 712
Query 772 ATCTTGCCTCTGATGACATTGGAGTCCTCAGTTTCCCACAGGAGCTTTACATTGAAGATA 831
|||||||||| |||||| ||||||||||||||||||||||||| ||||||| ||| |||
Sbjct 713 ATCTTGCCTCGGATGACCTTGGAGTCCTCAGTTTCCCACAGGATCTTTACACTGAGGATG 772
Query 832 ACATGGATATTGGTGTGTTAGATGGCTGCGTTTGTTTGATGTGTTACGACGAGTATAGCC 891
| |||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 773 ATATGGATGTAGGTGTGTTAGATGGCTGCGTTTGTTTGATGTGTTACGACGAGTTTAGCC 832
Query 892 ATGTTGATGTTTGGGTTTTGAAAGAGTATGAGGAT-TATAAATCTTGGACTAAGCTGTAT 950
|||||||||||||||||||||| |||||||| ||| || ||||||||||||||||||| |
Sbjct 833 ATGTTGATGTTTGGGTTTTGAAGGAGTATGAAGATGTA-AAATCTTGGACTAAGCTGTTT 891
Query 951 AGGGTGCCGAAACCAGAGAGTGTTGAATCGGTTGAGTTCATTAGACCTCTGATCTGTTCC 1010
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||
Sbjct 892 AGGGTGCCGAAACCAGAGAGTGTTGAATCGGTTGACTTCATGAGACCTCTGATCTATTCC 951
Query 1011 AAGGACAGGAGCAAGATTTTGCTGGAGATTAACAATGCGGCGAATCTCATGTGGTTTGAT 1070
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 952 AAGGACAGGAGCAAGATTTTACTGGAGATTAACAATGCGAAGAATCTCATGTGGTTTGAT 1011
Query 1071 TTGGAAAGTCAG-AGTCTTACAACTGCCGGAATAGAG---TGTGATAGTTCATTTACCGC 1126
||||| ||| || || |||||||||| |||||| || ||||||||||||||||| ||
Sbjct 1012 TTGGAGAGTAAGGAG-CTTACAACTGTTGGAATAAAGGCGTGTGATAGTTCATTTACTGC 1070
Query 1127 AGACATCCTCGTGAGTAGCCTTGTTTTGGGATGTAAAGGAGATCCTACTCAAGCTCAGCG 1186
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1071 AGACATCCTCGTGAGTAGCCTTGTTTTGGGATGTAAAGGAGATCCTACTGAAGCTCAGCG 1130
Query 1187 CAGTAAAGATCAGAAGATGATGCCAAAGAGTA-CTAAAAGGTGGGATGGTTTTCTGTCCA 1245
||| |||||||| || || |||| ||||||| | |||||| | |||||||||||||||
Sbjct 1131 CAGGAAAGATCA-AA--TGGTGCCGAAGAGTAAC-AAAAGG-G--ATGGTTTTCTGTCCA 1183
Query 1246 AGGGATTCAAGCTGAAGCTATGA 1268
|||||||||||||||||||||||
Sbjct 1184 AGGGATTCAAGCTGAAGCTATGA 1206
> Ahg329378 jgi|Araly1|329378|fgenesh1_pm.C_scaffold_7001605
Length=1221
Score = 490 bits (265), Expect = 1e-137
Identities = 877/1162 (75%), Gaps = 84/1162 (7%)
Strand=Plus/Plus
Query 60 ATGGCGGAAT-GTCCGACGGATCTCATCAACGAAATGTTT-CTCCGTCTCA-GAGCAACT 116
||||| |||| ||||| |||| |||||| ||| | ||| ||||| || | ||||||
Sbjct 1 ATGGC-GAATATTCCGATGGATATCATCACCGATCT-TTTCCTCCGACT-ACCAGCAACA 57
Query 117 ACGCTCGTAAAG-TGTCGCGTCCTCTCAAAGCCTTGCTTCTCTTTGATCGACAGTCCCGA 175
|| ||||| | | ||| |||||||||| || ||||||||| | ||||||||||| |
Sbjct 58 ACTCTCGT-CCGATATCGAATCCTCTCAAAACCATGCTTCTCTCTAATCGACAGTCCTAA 116
Query 176 GTTCGTCTCATCTCATCTCCGTCGCAGACTCGAAACGGGAGAACATCTCATGATCTTACT 235
||| || |||||||||| || | |||| || | ||||| || ||||||||||||||
Sbjct 117 TTTCATCGAATCTCATCTCAATCAAACACTCCAATCCGGAGATCACCTCATGATCTTACT 176
Query 236 CCGAGGACCTCGTCTTCTAC-GCACGGTGGAGCTAGACTCGCCTGAGAACGTCTCCGACA 294
|||||||||||||||||| | | || || | || ||||| || || || ||| |||||
Sbjct 177 CCGAGGACCTCGTCTTCT-CTGTACAGTAAACCTCGACTCACCGGATAAAGTCACCGACG 235
Query 295 TCCCTCATCCTTTACAAGCCGGAGGTTTTACAGAGGTTTTTGGTTCATT-TAACGGTGTC 353
| |||||| || || |||| ||||| || || ||||| ||||| || ||||||| |
Sbjct 236 TTGAACATCCTCTAAAAACCGGTGGTTTAACCGAAGTTTTCGGTTC-TTGTAACGGTTTA 294
Query 354 ATAGGGTTAT-GTAACTCTCCTGTTGATCTAGCGATCTTT-AATCCTTCGACTAGG-AAG 410
|| || |||| | || || ||| |||| ||||||| ||| |||||||| ||| || ||
Sbjct 295 ATCGGTTTATCG-AATTCACCTACTGATATAGCGAT-TTTCAATCCTTCCACTCGGCAA- 351
Query 411 ATTCACCGTTTACCAATTGAGCCAATTGATTTCCCAGAACGTGACATC-ACTCGTGAG-T 468
|| ||||| ||||| ||| | ||||||| || ||| || || | ||||||| | |
Sbjct 352 ATCCACCGGTTACCGGCTGAATCGGTTGATTTTCCGGAAGGT-TCAACGACTCGTG-GTT 409
Query 469 ATGTGTTTTACGG-TTTGGGTTATGATTCTGTGGGCGATGACTT-TAAAGTTGTGAGGAT 526
|||||||||| || ||| ||||||||||| || |||||| || ||||||||| || ||
Sbjct 410 ATGTGTTTTATGGATTT-GGTTATGATTCGGTTAACGATGA-TTATAAAGTTGTTAGAAT 467
Query 527 TGTTCAGTGT-AAGCT--TAAAGAAGGTAAAAAGAAATTT-CCTTGCCCTGT-TGAAG-T 580
||||||||| ||| | ||||| | | || | ||| || ||| | || || |
Sbjct 468 GGTTCAGTGTAAAGGTGGTAAAGCTGATGAATTGGTTTTTGGATT-TCCT-TATG-AGAT 524
Query 581 CAAAGTTTTCAGCTTGAAGAAGAATTCGTGGAAGAGAGT---GTGTCTTATGTTC-GAGT 636
|||||||| ||||||||||||||||| ||||||||| | | |||| | | | |
Sbjct 525 TAAAGTTTTTAGCTTGAAGAAGAATTCATGGAAGAGAATCACAAGAGTTAT-TCCTGCGA 583
Query 637 TTCAGATTCTTTGGATTT-CGTACTATTACCATCTCTTGCCTCGTCGTGGCTATGGTGTG 695
||||| || || | ||| | | |||||| ||||||||| ||||||||| || |||||
Sbjct 584 TTCAG-TT-ATT-GTTTTAC-TTCTATTATCATCTCTTGTATCGTCGTGGATACGGTGT- 638
Query 696 GTT-GTTAACAACCA-TCTTCACTGGATTTTGCCTCGAAGGCAGGGAGTCATTGCCTTTA 753
|| | || ||| | |||||||||| || | |||||||| | ||| | || |||||||
Sbjct 639 TTTAGCTAGCAA-TAGTCTTCACTGGGTTCTACCTCGAAGACCTGGACTTATCGCCTTTA 697
Query 754 ACGCGATAATCAA-ATATGATCTTGCCT-CTGATGACA-TT-GGAGTCCTCAGTTTCCCA 809
||||||| || || || |||||||| | |||| || | || ||| || | | ||| ||
Sbjct 698 ACGCGATTAT-AAGATTTGATCTTG-ATACTGAGGA-ATTTGGGATTCTTGA-TTTTCCT 753
Query 810 CAGGAGCTTTACATTGAAGATAACATGGATATTGGTGTGTTAGATGGCTG-CGTTTGTTT 868
|||| | || | | | || || || ||||||||||| |||||||| || | |||||||
Sbjct 754 GAGGATC-TTGC--TCATGAGAATATTGATATTGGTGTTTTAGATGGGTGTC-TTTGTTT 809
Query 869 GATGTGTTACGACGAGTATAGCCATGTTGATGTTTGGGTTTTGAAAGAGTATGAGGATTA 928
||||||| || | |||| ||| |||||||||||||| || |||| |||||| | | ||
Sbjct 810 GATGTGTAACCATGAGTTTAGTTATGTTGATGTTTGGATTATGAAGGAGTATAAAG-TT- 867
Query 929 TAA--ATCTTGGACTAAGCTGTATAGGGTGCCGAAACCAG-AGAGTGTTGAATCGGTTGA 985
|| ||||||| |||| ||| |||||| |||||||| | |||||||||| ||| ||||
Sbjct 868 GAAGGGTCTTGGAGTAAGTTGTTTAGGGTACCGAAACC-GAAGAGTGTTGAGTCGTTTGA 926
Query 986 GTTCATTAGACCTCTGATCTGTTCCAAGGACAGG-AGCAAGATTTTGCTGGAGATTAACA 1044
|| || ||||||||||| | ||||||||| ||| | ||||||||| ||||||| || |
Sbjct 927 TTTTATGAGACCTCTGATTTATTCCAAGGAGAGGTA-TAAGATTTTGTTGGAGATAAATA 985
Query 1045 ATGCGGCGAATCTCATGTGGTTTGATTTGGAA-AGTCAGA-GTCTTACAACTGC--CGGA 1100
|| ||||| || ||||||||||||| ||| ||| ||| || ||| ||| || |||
Sbjct 986 AT---GCGAAGCTTGTGTGGTTTGATTT-GAAGAGTAAGAGGT-TTAGAAC-GCTTAGGA 1039
Query 1101 -ATA-GAGTGTGATAGTTCATTTACCGCAG-ACATCCTCGTGAGTAGCCTTGTTTTGGGA 1157
| | || ||||||||||| | || ||| | || | || |||||||| ||||||||||||
Sbjct 1040 TAAAGGATTGTGATAGTTCGTATAGCGCGGAAC-TTCTTGTGAGTAGTCTTGTTTTGGGA 1098
Query 1158 TGTAAAGGAGATCCTACTCAAG 1179
|||||||||||||||||| |||
Sbjct 1099 TGTAAAGGAGATCCTACTGAAG 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52640718590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5