BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G22460.1

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945883 jgi|Araly1|945883|scaffold_702112.1                        544    2e-154


> Ahg945883 jgi|Araly1|945883|scaffold_702112.1
Length=444

 Score =  544 bits (294),  Expect = 2e-154
 Identities = 366/402 (91%), Gaps = 0/402 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTCTTAAAGACTCTCTTGCGCTCCTCCTTCTCTTCAACATCCTTTTCTTCACTCTC  60
            |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| 
Sbjct  23   ATGGCTCTTAAAAACTCTCTTGCGCTCTTCCTTCTCTTCAACTTCCTTTTCTTCACTCTA  82

Query  61   ACTACTGCCACTCGCAGTACCAATTGTCCTCCTCCACCAGGAAAACACAACAAACAAAAA  120
            |||| ||| ||||||||||| ||||||||||||||||| || |||||||||||||| |||
Sbjct  83   ACTAATGCAACTCGCAGTACTAATTGTCCTCCTCCACCGGGCAAACACAACAAACATAAA  142

Query  121  CCTAGCCCAACACCCACTACCGGGACTTGTCCTAAAGATGCCTTAAAGGTCGGTGTTTGT  180
            ||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||
Sbjct  143  CCTAGCCCAACACCCACTAGCGGGACTTGCCCTAAAGATGCCTTAAAGCTCGGTGTTTGT  202

Query  181  GTTAACGCACTCAACTTGTTAAACGGTTTGACCCCCGGAACTCCTCCTGTGACTCCATGT  240
            |||||||| || |||||||| ||||   |||||| |||||||||||||||||||||||||
Sbjct  203  GTTAACGCCCTTAACTTGTTGAACGACGTGACCCTCGGAACTCCTCCTGTGACTCCATGT  262

Query  241  TGCAGCCTTATCGAGGGTTTGGTAGATCTTGAAGCTGCGATTTGTCTTTGCACTGCTCTC  300
            |||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct  263  TGCAGCCTTATCAAGGGTTTGGTCGATCTTGAAGCTGCGGTTTGTCTTTGCACTGCCCTC  322

Query  301  AAGGCTAGTGTTCTTGGCATCAACCTTACCCTTCCCATCAACCTCAGCTTGCTTCTCAAT  360
            |||||||||||||||||||| ||||||| |||||||||  |||| |||||||||||||||
Sbjct  323  AAGGCTAGTGTTCTTGGCATTAACCTTAACCTTCCCATTGACCTTAGCTTGCTTCTCAAT  382

Query  361  ATTTGCAACAGAGAGGCATCACGTGACTTCCAATTCCCTTAA  402
             |||||| |||| ||||| ||| || |||||||| |||||||
Sbjct  383  GTTTGCAGCAGAAAGGCACCACATGGCTTCCAATGCCCTTAA  424



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14422812642


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5